BAC Information

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BAC

Clone NameB6Ng01-279I08
Chromosome10 (Build37)
Map Location 117,988,839 - 118,121,346
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b, Mdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng
Downstream geneLOC100043478, LOC100042850, Dyrk2, LOC668223, LOC100042861, LOC674417, Cand1, Grip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279I08.bB6Ng01-279I08.g
ACCGA079481GA079482
length6901,159
definitionB6Ng01-279I08.b B6Ng01-279I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,988,839 - 117,989,528)(118,120,185 - 118,121,346)
sequence
gaattcatctttagctcctaggactgcccaattgagcatatgtgatgaat
ctctgctatcataggggaataccttactctatggaatggctctcaattct
tgtgaggtcaaaatattcccatacatcaccatagatggtgtggttgttgg
taaggctctgtggcaccaatcttcaactccaagaaacaaacaaacaaaaa
aaaccctttccagtattaacacctctgtccaaactgtaaaggatgaaatt
atgcagatctagcatctctcatatggcactggggagtagtgttatatttt
gtgcactttcaagtgtgtaatgttctgcaatggatccaaaggaaatctga
cacttcctaaagcatcgtcgcaacatgctgtgctggttacttttgttggg
gtgcactatgtgaaggttgtctttgtaatattcaattattaattctatac
tggcagagagttttggtattgttattcttatggtccatcctctgcctcag
tattttgtaaacctacaccttcctcagtcactgattggcttaatacagat
ctgatggaaaatagctgggcaggaaaggggaggcaggacttctggtctga
gagagggtctctgggagaagaatctaggtgggaagattcaccagtgggac
acaaaggtgattgggcatactgggagagagggaagagagg
gaattcttattgatgtttaggctctaccttgccagaaggaaaacaatgcc
ctgtctttgagcacaagtgtttaaaggatttcatttctttacgtacccat
ggtgagggttgtatcttaacagcaggtacacaagggactggatagctaac
tcaaatggataaagagttataatgaaaaagataaggatttgacactattg
ttttccaactgctattcctgccgataataagtaaaacattggaaaagaaa
taagtaaaagatgcttaattttggtagaaatacaaaatttgtaaacacac
aaagctaagaagtttgagatttgtgactctaaagagtggttctcaacccg
tgggtcatgatccctttgggggctgaagggccctttctctggggtcacca
ctgaaaaacatggatacttacattataattcataacagtagcaaaattat
aattatcaagtctcagcaaaaaataatctcatggttgggagggggtcacc
acagcttgaggaactgctgtaaagggtcacagtgttctgaaggctgagaa
cctccactttaaaggaaacgaagaataatcatcttttcaacacctcagct
ctccgaggagtgagctgcattttcctgaagtccttaagaggtcagactgc
acccggcacgtgaacactggcatattttcttgtggtatgctggctttaaa
agaaagagcacagagtaaccaacgtgcagttgtccaaggtcattcattta
tcccaaggcaactcaagaatttctgccgcctctgctgattgcagcctact
ccgtttccatgatatcatccaatatccttttatgggacgatttagaagcc
tctaaatggggatggaagaaatggtttctggaaattctttctgtcacctc
cagtctactctccctttcatggcctcagtgtcgagcatagactgttgttt
agcagttttatacacaaacaggacagtggccctagcagcagtacagctta
atgagttcatcgtcatttggcaatttcagttccctgaattttaccaggcc
acacaatctctgtgagggccttgaaatgatcgctacagccgagttcacca
ttatctcactcctgtgttgactttgttcttctgttgggacttctccgttc
taattttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117988839_117989528
seq2: B6Ng01-279I08.b_45_734

seq1  GAATTCATCTTTAGCTCCTAGGACTGCCCAATTGAGCATATGTGATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTTAGCTCCTAGGACTGCCCAATTGAGCATATGTGATGAAT  50

seq1  CTCTGCTATCATAGGGGAATACCTTACTCTATGGAATGGCTCTCAATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTATCATAGGGGAATACCTTACTCTATGGAATGGCTCTCAATTCT  100

seq1  TGTGAGGTCAAAATATTCCCATACATCACCATAGATGGTGTGGTTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTCAAAATATTCCCATACATCACCATAGATGGTGTGGTTGTTGG  150

seq1  TAAGGCTCTGTGGCACCAATCTTCAACTCCAAGAAACAAACAAACAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTCTGTGGCACCAATCTTCAACTCCAAGAAACAAACAAACAAAAA  200

seq1  AAACCCTTTCCAGTATTAACACCTCTGTCCAAACTGTAAAGGATGAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTTTCCAGTATTAACACCTCTGTCCAAACTGTAAAGGATGAAATT  250

seq1  ATGCAGATCTAGCATCTCTCATATGGCACTGGGGAGTAGTGTTATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATCTAGCATCTCTCATATGGCACTGGGGAGTAGTGTTATATTTT  300

seq1  GTGCACTTTCAAGTGTGTAATGTTCTGCAATGGATCCAAAGGAAATCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTTTCAAGTGTGTAATGTTCTGCAATGGATCCAAAGGAAATCTGA  350

seq1  CACTTCCTAAAGCATCGTCGCAACATGCTGTGCTGGTTACTTTTGTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCTAAAGCATCGTCGCAACATGCTGTGCTGGTTACTTTTGTTGGG  400

seq1  GTGCACTATGTGAAGGTTGTCTTTGTAATATTCAATTATTAATTCTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACTATGTGAAGGTTGTCTTTGTAATATTCAATTATTAATTCTATAC  450

seq1  TGGCAGAGAGTTTTGGTATTGTTATTCTTATGGTCCATCCTCTGCCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGAGTTTTGGTATTGTTATTCTTATGGTCCATCCTCTGCCTCAG  500

seq1  TATTTTGTAAACCTACACCTTCCTCAGTCACTGATTGGCTTAATACAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTAAACCTACACCTTCCTCAGTCACTGATTGGCTTAATACAGAT  550

seq1  CTGATGGAAAATAGCTGGGCAGGAAAGGGGAGGCAGGACTTCTGGTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAAAATAGCTGGGCAGGAAAGGGGAGGCAGGACTTCTGGTCTGA  600

seq1  GAGAGGGTCTCTGGGAGAAGAATCTAGGTGGGAAGATTCACCAGTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGGTCTCTGGGAGAAGAATCTAGGTGGGAAGATTCACCAGTGGGAC  650

seq1  ACAAAGGTGATTGGGCATACTGGGAGAGAGGGAAGAGAGG  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGATTGGGCATACTGGGAGAGAGGGAAGAGAGG  690

seq1: chr10_118120185_118121346
seq2: B6Ng01-279I08.g_65_1223 (reverse)

seq1  ATAAAAT----AAAGAGAA--CCCAACAGA--GACAATGTC-ACACAGAG  41
      |||||||    |  |||||  |||||||||   |||| ||| ||||||  
seq2  ATAAAATTAGAACGGAGAAGTCCCAACAGAAGAACAAAGTCAACACAGGA  50

seq1  ATGAGATTAGATGGTGACCTCGGCCTGTAGCCGATCATTTCAAAGGCCCC  91
       ||||||   ||||||| ||||| |||||| |||||||||| ||||||| 
seq2  GTGAGAT--AATGGTGAACTCGG-CTGTAG-CGATCATTTC-AAGGCCC-  94

seq1  TTCACAAGGAGATTGTGTGGCCTGGTAAAATTCAGGGGACCTGAAATTGC  141
       |||||  |||||||||||||||||||||||||| |||| ||||||||||
seq2  -TCACA--GAGATTGTGTGGCCTGGTAAAATTCA-GGGAACTGAAATTGC  140

seq1  CAAATGACGATGAACTCATTAAGCTGTACTGCTGCCTAGGCCACTGTCCT  191
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  CAAATGACGATGAACTCATTAAGCTGTACTGCTGCTAGGGCCACTGTCCT  190

seq1  GTTTGTGTATAAAAACTGCTAAACAACAGTTCTATGCTCGACACTGAGGC  241
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  GTTTGTGTAT-AAAACTGCTAAACAACAG-TCTATGCTCGACACTGAGGC  238

seq1  CATGAAAGGGAGAGTAGACTGGAGGTGACAGAAAGAATTTCCAGAAACCA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAGGGAGAGTAGACTGGAGGTGACAGAAAGAATTTCCAGAAACCA  288

seq1  TTTCTTCCATCCCCATTTAGAGGCTTCTAAATCGTCCCATAAAAGGATAT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCATCCCCATTTAGAGGCTTCTAAATCGTCCCATAAAAGGATAT  338

seq1  TGGATGATATCATGGAAACGGAGTAGGCTGCAATCAGCAGAGGCGGCAGA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATATCATGGAAACGGAGTAGGCTGCAATCAGCAGAGGCGGCAGA  388

seq1  AATTCTTGAGTTGCCTTGGGATAAATGAATGACCTTGGACAACTGCACGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGAGTTGCCTTGGGATAAATGAATGACCTTGGACAACTGCACGT  438

seq1  TGGTTACTCTGTGCTCTTTCTTTTAAAGCCAGCATACCACAAGAAAATAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACTCTGTGCTCTTTCTTTTAAAGCCAGCATACCACAAGAAAATAT  488

seq1  GCCAGTGTTCACGTGCCGGGTGCAGTCTGACCTCTTAAGGACTTCAGGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGTTCACGTGCCGGGTGCAGTCTGACCTCTTAAGGACTTCAGGAA  538

seq1  AATGCAGCTCACTCCTCGGAGAGCTGAGGTGTTGAAAAGATGATTATTCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCTCACTCCTCGGAGAGCTGAGGTGTTGAAAAGATGATTATTCT  588

seq1  TCGTTTCCTTTAAAGTGGAGGTTCTCAGCCTTCAGAACACTGTGACCCTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTCCTTTAAAGTGGAGGTTCTCAGCCTTCAGAACACTGTGACCCTT  638

seq1  TACAGCAGTTCCTCAAGCTGTGGTGACCCCCTCCCAACCATGAGATTATT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGTTCCTCAAGCTGTGGTGACCCCCTCCCAACCATGAGATTATT  688

seq1  TTTTGCTGAGACTTGATAATTATAATTTTGCTACTGTTATGAATTATAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGAGACTTGATAATTATAATTTTGCTACTGTTATGAATTATAAT  738

seq1  GTAAGTATCCATGTTTTTCAGTGGTGACCCCAGAGAAAGGGCCCTTCAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATCCATGTTTTTCAGTGGTGACCCCAGAGAAAGGGCCCTTCAGC  788

seq1  CCCCAAAGGGATCATGACCCACGGGTTGAGAACCACTCTTTAGAGTCACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGGGATCATGACCCACGGGTTGAGAACCACTCTTTAGAGTCACA  838

seq1  AATCTCAAACTTCTTAGCTTTGTGTGTTTACAAATTTTGTATTTCTACCA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAACTTCTTAGCTTTGTGTGTTTACAAATTTTGTATTTCTACCA  888

seq1  AAATTAAGCATCTTTTACTTATTTCTTTTCCAATGTTTTACTTATTATCG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGCATCTTTTACTTATTTCTTTTCCAATGTTTTACTTATTATCG  938

seq1  GCAGGAATAGCAGTTGGAAAACAATAGTGTCAAATCCTTATCTTTTTCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAATAGCAGTTGGAAAACAATAGTGTCAAATCCTTATCTTTTTCAT  988

seq1  TATAACTCTTTATCCATTTGAGTTAGCTATCCAGTCCCTTGTGTACCTGC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTCTTTATCCATTTGAGTTAGCTATCCAGTCCCTTGTGTACCTGC  1038

seq1  TGTTAAGATACAACCCTCACCATGGGTACGTAAAGAAATGAAATCCTTTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGATACAACCCTCACCATGGGTACGTAAAGAAATGAAATCCTTTA  1088

seq1  AACACTTGTGCTCAAAGACAGGGCATTGTTTTCCTTCTGGCAAGGTAGAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGTGCTCAAAGACAGGGCATTGTTTTCCTTCTGGCAAGGTAGAG  1138

seq1  CCTAAACATCAATAAGAATTC  1162
      |||||||||||||||||||||
seq2  CCTAAACATCAATAAGAATTC  1159