BAC Information

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BAC

Clone NameB6Ng01-280C18
Chromosome10 (Build37)
Map Location 36,914,335 - 37,098,799
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280C18.bB6Ng01-280C18.g
ACCGA079966GA079967
length1,0691,057
definitionB6Ng01-280C18.b B6Ng01-280C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,914,335 - 36,915,403)(37,097,734 - 37,098,799)
sequence
gaattctgtgatttgtcaaaaccctaaacaaaacagggctgcagttgatt
ccgacaaatggccacagctgtggaaaagtttctctgcgaaaccagcagct
cagcacaaatagccatctcatcagttttatgatcacttttccagcacgct
ctctttctccccaacactcagcgactggttccttgaggtcaggtcccttc
ttttagttgtgggcaaggtggttgtgcttttcctatagtagcttcgcttt
tctttacactcagtttcccaggttggtccatgtgtcatctcagttgacac
agaaaggtcaacaccggttgtatggccctggggagacttgttgcttagag
gttgtgactggtgccaacagtgacacacagccctgtgtcctaggcattct
gatctaggtggggccgaacgctcaggccatgaagcctggaagccaggttg
cctcacagctaaagccagcccaggtgtgctgagagttttccaaggtttgc
ctcactgtgattaagttcgctggaactgctgcaaaagtgagaagcccgga
ggagggaagcgaggtcaatgaaaactgaacctcagcgaaactcaaggaat
ccaaaccaatcccaaaccacgtttttatgagaccgttctgtgctgaaaac
tgatgaggtggatggttttctgctgttgcggcttagttaccttcctcttt
ttggaggctgtatatttctctctcccagcacaatactgtgtcacaactcc
ccccatacccgcccccggggccgctttcattttgaggtctgtctgtagaa
gcctcattgtcatgtgcaggcatggtgatgtttgtgtttaaggcatgcat
gggacaaagagacttttggacttttggaaagcatggtatcagctcagaat
ttgaacataaatgatctctctctctttttttttcttttctttcttttttt
ttttgggtttcgagacagggtttctctgtatagccctggctgctctggac
tcactttgtaagaccaggctggtcctcgacttcagaatcggcctgccttt
actgggaattaaggcatgc
gaattcaatataattcaatcaaagactgaggaatacacatgcaagaaaac
aaggctggatagaaagttggtaaagttggcattgttactgaatgtaatgc
tttgcagtacttgagaaagggctagaaagagtgtgttgtgctggcaagat
acaacagctatttcatatgtataaccactgaagttcacatgaagatttag
cgcactagggaatctgatgtgaggatgtcaccatgtttctgggaggatat
ataggcagccaggaattcttttcattggtcaaggaagccaaggaatggaa
tgtcaccagtgtcctctgtgtcctgtgacctgctcttgtctgtgtcctgt
accatttcaacatgtcatcagggacgacagtgttcaaaggatgcatgtga
gagagagcacagccattcccactgtgcttgctcttagtcagccagcttta
aaagctttcttgtactcaaagataaaagcccttgaccttttaactcaaaa
ctgaaatgtctgatgcttagagccgatagtctagtgtgtcctctggatag
actccgttgtgggtcccaatgggagcagtgatttgaaacatcctcttggt
ttcagattcttattctccacgttttaaaggggaaacatcattgagggtga
aatttggactcataaaactctgcattaattacatactgactctgcactat
taagacaaagtcctttgaggtctggccatcagatatctttcagaggagag
ggtctgggctgttattcttactagcccctgaaagagccccatcctctctc
ctgcagccccttttgtccctagcccttctttttttcaatggttgccatgg
aatcaaccattaacatatgaaaagccatacacaacactcttccctttacc
cttttcttccccaggaccaaatgcctgttgctaaagccttggaccttaat
attcatgtaaaggaggtgggggtgtgagacagaaataaaattctaagtga
aaatcaaagacatgtcatttacatcttctggaggcaatggtcatctattt
taagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_36914335_36915403
seq2: B6Ng01-280C18.b_43_1111

seq1  GAATTCTGTGATTTGTCAAAACCCTAAACAAAACAGGGCTGCAGTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGATTTGTCAAAACCCTAAACAAAACAGGGCTGCAGTTGATT  50

seq1  CCGACAAATGGCCACAGCTGTGGAAAAGTTTCTCTGCGAAACCAGCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACAAATGGCCACAGCTGTGGAAAAGTTTCTCTGCGAAACCAGCAGCT  100

seq1  CAGCACAAATAGCCATCTCATCAGTTTTATGATCACTTTTCCAGCACGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAAATAGCCATCTCATCAGTTTTATGATCACTTTTCCAGCACGCT  150

seq1  CTCTTTCTCCCCAACACTCAGCGACTGGTTCCTTGAGGTCAGGTCCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCCCCAACACTCAGCGACTGGTTCCTTGAGGTCAGGTCCCTTC  200

seq1  TTTTAGTTGTGGGCAAGGTGGTTGTGCTTTTCCTATAGTAGCTTCGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTGTGGGCAAGGTGGTTGTGCTTTTCCTATAGTAGCTTCGCTTT  250

seq1  TCTTTACACTCAGTTTCCCAGGTTGGTCCATGTGTCATCTCAGTTGACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACACTCAGTTTCCCAGGTTGGTCCATGTGTCATCTCAGTTGACAC  300

seq1  AGAAAGGTCAACACCGGTTGTATGGCCCTGGGGAGACTTGTTGCTTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTCAACACCGGTTGTATGGCCCTGGGGAGACTTGTTGCTTAGAG  350

seq1  GTTGTGACTGGTGCCAACAGTGACACACAGCCCTGTGTCCTAGGCATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGACTGGTGCCAACAGTGACACACAGCCCTGTGTCCTAGGCATTCT  400

seq1  GATCTAGGTGGGGCCGAACGCTCAGGCCATGAAGCCTGGAAGCCAGGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGGTGGGGCCGAACGCTCAGGCCATGAAGCCTGGAAGCCAGGTTG  450

seq1  CCTCACAGCTAAAGCCAGCCCAGGTGTGCTGAGAGTTTTCCAAGGTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGCTAAAGCCAGCCCAGGTGTGCTGAGAGTTTTCCAAGGTTTGC  500

seq1  CTCACTGTGATTAAGTTCGCTGGAACTGCTGCAAAAGTGAGAAGCCCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTGATTAAGTTCGCTGGAACTGCTGCAAAAGTGAGAAGCCCGGA  550

seq1  GGAGGGAAGCGAGGTCAATGAAAACTGAACCTCAGCGAAACTCAAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAGCGAGGTCAATGAAAACTGAACCTCAGCGAAACTCAAGGAAT  600

seq1  CCAAACCAATCCCAAACCACGTTTTTATGAGACCGTTCTGTGCTGAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCAATCCCAAACCACGTTTTTATGAGACCGTTCTGTGCTGAAAAC  650

seq1  TGATGAGGTGGATGGTTTTCTGCTGTTGCGGCTTAGTTACCTTCCTC-TT  699
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATGAGGTGGATGGTTTTCTGCTGTTGCGGCTTAGTTACCTTCCTCTTT  700

seq1  TTGGAGGCTGTATATTTCTCTCTCCCAGCACAATACTGTGTCACAACTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCTGTATATTTCTCTCTCCCAGCACAATACTGTGTCACAACTCC  750

seq1  CCCCATACCCGCCCCCGGGGCCGCTTTCATTTTGAGGTCTGTCTGTAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATACCCGCCCCCGGGGCCGCTTTCATTTTGAGGTCTGTCTGTAGAA  800

seq1  GCCTCATTGTCATGTGCAGGCATGGTGATGTTTGTGTTTAAGGCATGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATTGTCATGTGCAGGCATGGTGATGTTTGTGTTTAAGGCATGCAT  850

seq1  -GGACAAAGAGACTTTTGGACTTTTGGAAAGCATGGTATCAGCTCAGAAT  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAAGAGACTTTTGGACTTTTGGAAAGCATGGTATCAGCTCAGAAT  900

seq1  TTGAACATAAATGATCTCTCTCTCTTTTTTTTTCTTTTCTTTTCTTTTTT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGAACATAAATGATCTCTCTCTCTTTTTTTTTCTTTTC-TTTCTTTTTT  949

seq1  TTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGCTCTGG  998
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGG-GTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGCTCTGG  998

seq1  AACTCACTTTGT-AGACCAGGCTGG-CCTCGAACTCAGAAATCGGCCTGC  1046
       ||||||||||| |||||||||||| ||||||  |||| |||||||||||
seq2  -ACTCACTTTGTAAGACCAGGCTGGTCCTCGACTTCAG-AATCGGCCTGC  1046

seq1  CTTTACTGGGATTAAAGGCATGC  1069
      ||||||||||| | |||||||||
seq2  CTTTACTGGGAATTAAGGCATGC  1069

seq1: chr10_37097734_37098799
seq2: B6Ng01-280C18.g_68_1124 (reverse)

seq1  TCTCTTTAAAATAGAATGGACCATTTTGCCTCCAGAGGATGTAAATTGAA  50
      |||| ||||||||||   |||||  ||||||||||| |||||||||   |
seq2  TCTC-TTAAAATAGA--TGACCA--TTGCCTCCAGAAGATGTAAAT--GA  43

seq1  CATGTCTTTGTGTTTTCACTTAGAATTTTATTTCTGTTCTCACACCCCAC  100
      ||||||||||  |||||||||||||||||||||||| |||||||||||  
seq2  CATGTCTTTG-ATTTTCACTTAGAATTTTATTTCTG-TCTCACACCCCCA  91

seq1  CCTCCTTTACATGAATATTAAGGTCCAAGGCTTTAGCAACAGGCATTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTACATGAATATTAAGGTCCAAGGCTTTAGCAACAGGCATTTGG  141

seq1  TCCTGGGGGAAGAAAGGGTAAAGGGAAGAGTGTTGTGTATGGCTTTTCAT  200
      |||||||| |  ||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGAAGAAAAGGGTAAAGGGAAGAGTGTTGTGTATGGCTTTTCAT  191

seq1  ATGTTAATGGTTGATTCCATGGCAACCATTGAAAAAAAGAAGGGCTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAATGGTTGATTCCATGGCAACCATTGAAAAAAAGAAGGGCTAGGG  241

seq1  ACAAAAGGGGCTGCAGGAGAGAGGATGGGGCTCTTTCAGGGGCTAGTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGGGCTGCAGGAGAGAGGATGGGGCTCTTTCAGGGGCTAGTAAG  291

seq1  AATAACAGCCCAGACCCTCTCCTCTGAAAGATATCTGATGGCCAGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAGCCCAGACCCTCTCCTCTGAAAGATATCTGATGGCCAGACCTC  341

seq1  AAAGGACTTTGTCTTAATAGTGCAGAGTCAGTATGTAATTAATGCAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACTTTGTCTTAATAGTGCAGAGTCAGTATGTAATTAATGCAGAGT  391

seq1  TTTATGAGTCCAAATTTCACCCTCAATGATGTTTCCCCTTTAAAACGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAGTCCAAATTTCACCCTCAATGATGTTTCCCCTTTAAAACGTGG  441

seq1  AGAATAAGAATCTGAAACCAAGAGGATGTTTCAAATCACTGCTCCCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAGAATCTGAAACCAAGAGGATGTTTCAAATCACTGCTCCCATTG  491

seq1  GGACCCACAACGGAGTCTATCCAGAGGACACACTAGACTATCGGCTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACAACGGAGTCTATCCAGAGGACACACTAGACTATCGGCTCTAA  541

seq1  GCATCAGACATTTCAGTTTTGAGTTAAAAGGTCAAGGGCTTTTATCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGACATTTCAGTTTTGAGTTAAAAGGTCAAGGGCTTTTATCTTTG  591

seq1  AGTACAAGAAAGCTTTTAAAGCTGGCTGACTAAGAGCAAGCACAGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGAAAGCTTTTAAAGCTGGCTGACTAAGAGCAAGCACAGTGGGA  641

seq1  ATGGCTGTGCTCTCTCTCACATGCATCCTTTGAACACTGTCGTCCCTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTGCTCTCTCTCACATGCATCCTTTGAACACTGTCGTCCCTGAT  691

seq1  GACATGTTGAAATGGTACAGGACACAGACAAGAGCAGGTCACAGGACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTTGAAATGGTACAGGACACAGACAAGAGCAGGTCACAGGACACA  741

seq1  GAGGACACTGGTGACATTCCATTCCTTGGCTTCCTTGACCAATGAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACTGGTGACATTCCATTCCTTGGCTTCCTTGACCAATGAAAAGA  791

seq1  ATTCCTGGCTGCCTATATATCCTCCCAGAAACATGGTGACATCCTCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGCTGCCTATATATCCTCCCAGAAACATGGTGACATCCTCACAT  841

seq1  CAGATTCCCTAGTGCGCTAAATCTTCATGTGAACTTCAGTGGTTATACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCCTAGTGCGCTAAATCTTCATGTGAACTTCAGTGGTTATACAT  891

seq1  ATGAAATAGCTGTTGTATCTTGCCAGCACAACACACTCTTTCTAGCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGCTGTTGTATCTTGCCAGCACAACACACTCTTTCTAGCCCTT  941

seq1  TCTCAAGTACTGCAAAGCATTACATTCAGTAACAATGCCAACTTTACCAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGTACTGCAAAGCATTACATTCAGTAACAATGCCAACTTTACCAA  991

seq1  CTTTCTATCCAGCCTTGTTTTCTTGCATGTGTATTCCTCAGTCTTTGATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATCCAGCCTTGTTTTCTTGCATGTGTATTCCTCAGTCTTTGATT  1041

seq1  GAATTATATTGAATTC  1066
      ||||||||||||||||
seq2  GAATTATATTGAATTC  1057