BAC Information

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BAC

Clone NameB6Ng01-280D05
Chromosome10 (Build37)
Map Location 20,770,146 - 20,770,853
singlet/doubletsinglet
Overlap geneAhi1
Upstream geneMap3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202
Downstream geneMyb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280D05.bB6Ng01-280D05.g
ACCGA079986GA079987
length1,2091,014
definitionB6Ng01-280D05.b B6Ng01-280D05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatctgattcagagctactaggagctgtctccttgagctcat
ctagtgatgagtataggctccttctcctagagacctccgctaattgatct
tttttcttttcttttttcttttccttccttctaatctcttcccaggtatt
cttacctgacctaaacttttcctcgggttcaagacccgtggaaaggcctg
tatacttattttgtgtaccatatttcctctttgctcctactctctctccc
cgctttacttctgatagattgccctgaatttcatccagaattttcagccc
tgccttaaccgcttgataacatgtgaaaaggaacaaaaaggctcctaaca
ctagagaaagttcaaggccaaacataccttgtaaagctatttcccactta
acttctgatagactgtcttgaatttcgttagaaagttcaaggccagacct
accttgtaaagctatttcccactttacttctgatagactgtcttgaattt
cgttagaaagttcaagaccagacttaccttgtaaagctatacttacgggt
accctgttccccagctgaagagttctgaattcacgcagttgaatccttct
caacagtctgttttacgggaacacttcattaccaccgttccccagctgaa
gagttctgaatccaggctggatccttctcaacagtctgttttacaggaac
acttcattaccaccgttccccagctgaagagttctgaatccacaccggat
ccttctcaacagtctgttttacgggaacctttatgaccgtgacccgcagt
tctggttccggaatgagggatcttccttgcgccggtgatggtaacttccc
gtcccgggttttctcgtcctgggtctcggcaccaactcttacacgcgttc
tcgcgaccgggccaggaagaacacacaaaaccggaatcttctgcggcaaa
agctttattgcttacatcttcaggagcagagagcaagagcaagagagagc
aagaggattgcgaaaccccgtcccttttagagaatatcctccgcctagac
gtgtcactccctgattgctgcagcccatcgccgagtgtcgtcacgggagg
cagagccatgggtggaaatactaccaggccaatgtcagaaatttttgttt
agcactaaaccagaatgtcagtgcaatcttgttaacgggccaattgtcac
gagcgactc
gaattccaatgggctatctttggcaaatgtaatatatgtatgtaccaata
catatatgcatgaaatatcaattgataaaagaaaagaagctgtgaattgg
aataagacagaggagacaacataatttttctaggctctgcccaacagtta
cctagcaacagcccacttctccaccagttatgagtcagaagccaggtata
taaagattgcttgtcttctttatcctttcatctcattctctcatattctc
tctctctctctctctctctctctctctgtctctctctctctgtcgctctg
cgtgtcccttaccttgtaactcttcttgatccctagttttatattcttgc
atttactcatggttgttgttttagctgactaaaatttaacccaaatgttt
ccaaacacttcttaggcagattctagttttgtatgtcccaccgttataaa
gcacagcataaacagtgttcgtcccgtgtgagacaacatgctttgtacat
gtatttgtgttcgtgaatcccgattccttatctattattacctacataag
attagctagaagttacagaacctggattactttttacaaatattctcagg
gctctctcatgaggagtattcatctaaatgattcacagaagataggattc
tgccatactagtctaggaactgggtatgtgtttgttcatttcttcttttg
agtgaacgtagaatccagtttcactatgtgaaaagggctataaagcactg
attaagggttttctgtacaattcagagttattgtgaaatttttctttttc
gggatttttatctcccttagttctggtttttaatacccaaagacacaata
ttccccttattagtactaggaacagctttcctcaaagactaatttaattc
aagaagaatactaaaaagtagttcaattttcatccttaattcataagggg
caaaaaacggtaaataaccataataataacctttacatagttggctgaat
gcccacatgcccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20770146_20770853
seq2: B6Ng01-280D05.g_363_1078

seq1  TGCGTGTTCTTTACCTTGGAACTCTTCTTGATCCCTAGTTTTATATTCTT  50
      ||||||| | |||||||| |||||||||||||||||||||||||||||||
seq2  TGCGTGTCCCTTACCTTGTAACTCTTCTTGATCCCTAGTTTTATATTCTT  50

seq1  CGATTTACTCATGGTTGTTGTTTTATCTGACTATAATTTAACCCAAATGT  100
        ||||||||||||||||||||||| ||||||| ||||||||||||||||
seq2  GCATTTACTCATGGTTGTTGTTTTAGCTGACTAAAATTTAACCCAAATGT  100

seq1  TTCCAAACACTTCTTAGGCAGAGTCTAGTTTTGTATGTCCCAGCGTTATA  150
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TTCCAAACACTTCTTAGGCAGATTCTAGTTTTGTATGTCCCACCGTTATA  150

seq1  AAGCACAGCAGAAACAGTGTTCGTCCCGTGTGAGACAACATGCTTTGTAC  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCATAAACAGTGTTCGTCCCGTGTGAGACAACATGCTTTGTAC  200

seq1  AGGTATTTGTGTTCGTGAATCCCGATTCCTTATCTATTATTACCTAGATA  250
      | |||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTATTTGTGTTCGTGAATCCCGATTCCTTATCTATTATTACCTACATA  250

seq1  AGATTAGCTAGAAGTAACAGAACCTGGATTACTTTTTACAAATATTCTCA  300
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGATTAGCTAGAAGTTACAGAACCTGGATTACTTTTTACAAATATTCTCA  300

seq1  GGGCTCTCTCATGTGGAGTATTCATCTAAATGATTAGAAGAAGATAGG-T  349
      ||||||||||||| |||||||||||||||||||||   |||||||||| |
seq2  GGGCTCTCTCATGAGGAGTATTCATCTAAATGATTCACAGAAGATAGGAT  350

seq1  TCTGCCATACTAGTCTAGGAACTGGGTATGTGTTTGTTCA-TTCTTCTTA  398
      |||||||||||||||||||||||||||||||||||||||| |||||||| 
seq2  TCTGCCATACTAGTCTAGGAACTGGGTATGTGTTTGTTCATTTCTTCTTT  400

seq1  TGAGTGAACGTAGAATCCAGTTTCACTATGTGGAAAGGGCTATACAGCAC  448
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TGAGTGAACGTAGAATCCAGTTTCACTATGTGAAAAGGGCTATAAAGCAC  450

seq1  TTAATAATGGGTTTCTGTACAATTCAAGAGTTATTGTGAAATTTT--CTT  496
      | | ||| || |||||||||||||| |||||||||||||||||||   ||
seq2  TGATTAAGGGTTTTCTGTACAATTC-AGAGTTATTGTGAAATTTTTCTTT  499

seq1  TTCATATATTTTATCT-CCTTATTTCTG--TTTTAATA-CCAAAGACACA  542
      |||     |||||||| ||||| |||||  |||||||| |||||||||||
seq2  TTCGGGATTTTTATCTCCCTTAGTTCTGGTTTTTAATACCCAAAGACACA  549

seq1  ATATT-CCCTAATTAGTACTAGGAACAGCTTT-CTCAAAGTCTATTTAAT  590
      ||||| |||| ||||||||||||||||||||| ||||||| ||| || | 
seq2  ATATTCCCCTTATTAGTACTAGGAACAGCTTTCCTCAAAGACTAATTTAA  599

seq1  TTTAAGATGAATACTAAAAAGTAGTTTAATTTTCATCTTTTATTTCTTAA  640
      || |||| |||||||||||||||||| ||||||||||  ||| ||| |||
seq2  TTCAAGAAGAATACTAAAAAGTAGTTCAATTTTCATC-CTTAATTCATAA  648

seq1  TGGGTAATAAACTGTAAGTAACCATTATAAGTACCTTTACATGTTTGGCT  690
       ||| || |||| |||| ||||||| ||||  ||||||||||  ||||||
seq2  GGGGCAAAAAACGGTAAATAACCATAATAATAACCTTTACATAGTTGGCT  698

seq1  GAATGCCCACATGCCCAT  708
      ||||||||||||||||||
seq2  GAATGCCCACATGCCCAT  716