BAC Information

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BAC

Clone NameB6Ng01-280F08
Chromosome10 (Build37)
Map Location 16,879,519 - 16,967,307
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382457, LOC546472, LOC100039576, LOC627511
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280F08.bB6Ng01-280F08.g
ACCGA080087GA080088
length9221,132
definitionB6Ng01-280F08.b B6Ng01-280F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,879,519 - 16,880,168)(16,966,155 - 16,967,307)
sequence
gaattctctggactggatcctgggtattctgtacttttttttccatgcat
gtctttttgggtctgagttgtttggtttgatgatgtctagttccatgtgt
tctttacatattttcaatatcagccctcagactgatgtggggtgggtgaa
gatcttttcctattctgtaagctgccaatttgtcctgttgacaatgtcct
ttcccttacagaagctttgcagtttcatgaggatccccttgttaactgtt
gatcatagtgctcatgctatagtcattcagaagctgtttcctattccaat
gtgttcaaaactattccccactttttcttctatcgggattagtgtattta
gttttatgatgagatcattgatacacttggacttgagttttgtgcagagt
gatagatatggatgtatttgcattcttctctatccatttagaccagcata
aattgataaagatatttttattttccattgtataattttagcttctttct
tttaaatgatgcctataggtgtgtggatctacttcagggtctttgatttg
actccattgatcaacctgtctgtttttaggcaaacaccagggagtatttt
tatggctattgttctgtagaatagcttgaaatcaggtatggtgataccta
caacaggtcttttattgtagtacaccatatttatgggtataatatgatga
tttttgacttctatccatataaacaatcctgtaaatacagatgttcaata
accacataaatactccttttaaatcaagctactacatattatctgtgaca
tccctcaagtatacttttccaacatttataatctatttgttcctgttctt
taatcatctataatagaattcatatatgaagcagattttgcattgatgtc
taactaagcatacaaaatggct

gaattcaccctcaatggtactttactatacatctcgttgacatggacctt
ttccctcgtagaacaatgttataatcatctcaacattcaaggatatgtag
tactcagatttctgagttacatcaaatgaaacattgtgatatttccatgg
gaagggtttaagtaattattatttatgatgaatagaataaaataactcta
tttactaggctgaaatgtaatgtaaatacagttatgtataacaaattaga
ttctgataagcttcataagttccttccttatacgttttctgtctaaacac
aaaataattgccagtatttacatgcatttaagtagcatgaaatccttttt
aaatattgtagtatatttagaaatattaatgttaatgtctgtgatccttt
caagtcataccttggttgaaaaaggttttttgtttgtttggtttgctctg
tttttttaagaatctgcttcatggcaaaacagacatcgactgggggtact
tcagaatgtgggaacatgctaggctagagagattgttcagtgatgaaggg
catatactgatcttccggaagtcccaaatttgattcccagtacctatttt
gggtaggtcacaatcacttgtaactctagctctagggaatttgatgcttt
cttatgtcctatacacatggggacatggacagagagacagacacacacat
gtagagagaaaagtattttatttaaaagtgtagaaacatgagcaaatctc
agagtttgcaacaaattcaaagggcctcttttgagaggtgatataagaca
tagattcagatgatagatagaaagatagatagatagatagatagatgata
gatataagagagaaaggaaaacggttttctgttaattattcaatgcatga
tagacattttctaatagttgcattcttagtaaaacaaatggtttccttat
ctgttggtgctcagttgtcttttcttctctgcttttctactgctaaaaca
tggaatgtcctggcatctggagtacatctatctgctgtctgagtatgttg
cgacggtacaaagtagattccaccagcatagctgcttctgaagaatagac
tgatctttaagccatgtgccatcacaattctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_16879519_16880168
seq2: B6Ng01-280F08.b_310_967

seq1  TGCTATAGTCATTCAGAAGCTGTTTCCTATTCCAATGTGTTCAAAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGTCATTCAGAAGCTGTTTCCTATTCCAATGTGTTCAAAACTAT  50

seq1  TCCCCACTTTTTCTTCTATCGGGATTAGTGTATTTAGTTTTATGATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTTTTTCTTCTATCGGGATTAGTGTATTTAGTTTTATGATGAGA  100

seq1  TCATTGATACACTTGGACTTGAGTTTTGTGCAGAGTGATAGATATGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATACACTTGGACTTGAGTTTTGTGCAGAGTGATAGATATGGATG  150

seq1  TATTTGCATTCTTCTCTATCCATTTAGACCAGCATAAATTGATAAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCATTCTTCTCTATCCATTTAGACCAGCATAAATTGATAAAGATA  200

seq1  TTTTTATTTTCCATTGTATAATTTTAGCTTCTTTCTTTTAAATGATGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTCCATTGTATAATTTTAGCTTCTTTCTTTTAAATGATGCCT  250

seq1  ATAGGTGTGTGGATCTACTTCAGGGTCTTTGATTTGACTCCATTGATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGTGTGGATCTACTTCAGGGTCTTTGATTTGACTCCATTGATCAA  300

seq1  CCTGTCTGTTTTTAGGCAAACACCAGGGAGTATTTTTATGGCTATTGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTGTTTTTAGGCAAACACCAGGGAGTATTTTTATGGCTATTGTTC  350

seq1  TGTAGAATAGCTTGAAATCAGGTATGGTGATACCTACAACAGGTCTTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATAGCTTGAAATCAGGTATGGTGATACCTACAACAGGTCTTTTA  400

seq1  TTGTAGTACACCATATTTATGGGTATAATATGATGA-TTTTGACTTCTAT  449
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGTAGTACACCATATTTATGGGTATAATATGATGATTTTTGACTTCTAT  450

seq1  CCATATAAACAATCCTGT-AATACAGATGTTCAATAACCACAT-AATACT  497
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  CCATATAAACAATCCTGTAAATACAGATGTTCAATAACCACATAAATACT  500

seq1  CCTTTTAAATCAAGCTACTACATATTATCTGTGACAT-CCTCAAGTATAC  546
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTTTTAAATCAAGCTACTACATATTATCTGTGACATCCCTCAAGTATAC  550

seq1  -TTTCCAACA-TTATAATCTATTTG-TCCTGTTCTTTAATCATCTATAAA  593
       ||||||||| |||||||||||||| ||||||||||||||||||||| ||
seq2  TTTTCCAACATTTATAATCTATTTGTTCCTGTTCTTTAATCATCTAT-AA  599

seq1  TAGAA-TCATATATGAAGCAGATTTTGCATTGATGTCTAACT-AGCATAC  641
      ||||| |||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGAATTCATATATGAAGCAGATTTTGCATTGATGTCTAACTAAGCATAC  649

seq1  AAAATGGCT  650
      |||||||||
seq2  AAAATGGCT  658


seq1: chr10_16966155_16967307
seq2: B6Ng01-280F08.g_64_1195 (reverse)

seq1  AAGAATGTTGATGGCAACATGGCCCTGTAAGGATCAAGTCTA-TCTCCAG  49
      ||||||  ||||||| |||||||    ||| |||| |||||| ||| |||
seq2  AAGAATTGTGATGGC-ACATGGC---TTAAAGATC-AGTCTATTCTTCAG  45

seq1  AAGCAGCTAATGCCTGGGTGGAAATTCCTACTTTGTACTGTCGCAAACCA  99
      |||||||| ||||   |||||||    ||||||||||| |||||||    
seq2  AAGCAGCT-ATGC--TGGTGGAA---TCTACTTTGTACCGTCGCAA---C  86

seq1  ATACTCAGAACAGGCAAGAATAAGATGTACTTCCCAGATGCCAGGACATT  149
      |||||||| ||||   |||   |||||||||  |||||||||||||||||
seq2  ATACTCAG-ACAG--CAGA--TAGATGTACT--CCAGATGCCAGGACATT  129

seq1  CCATGTTTTAGCAAGTAAGAAAAGCAGAGAAGAAAAGGACAACTGAGCAC  199
      |||||||||||| ||| ||||||||||||||||||| |||||||||||||
seq2  CCATGTTTTAGC-AGT-AGAAAAGCAGAGAAGAAAA-GACAACTGAGCAC  176

seq1  CAACAGATAAGGAAACCATTTGTTTTACTAAGAATGCAACTA-TAGAAAA  248
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAACAGATAAGGAAACCATTTGTTTTACTAAGAATGCAACTATTAGAAAA  226

seq1  TGTCTATCATGCATTGAATAATTAACAGAAAACCGTTTTCC-TTCTCTCT  297
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCTATCATGCATTGAATAATTAACAGAAAACCGTTTTCCTTTCTCTCT  276

seq1  TATATCTATCATCTATCTATCTATCTATCTATCTTTCTATCTATCATCTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATCATCTATCTATCTATCTATCTATCTTTCTATCTATCATCTG  326

seq1  AATCTATGTCTTATATCACCTCTCAAAAGAGGCCCTTTGAATTTGTTGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGTCTTATATCACCTCTCAAAAGAGGCCCTTTGAATTTGTTGCA  376

seq1  AACTCTGAGATTTGCTCATGTTTCTACACTTTTAAATAAAATACTTTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGATTTGCTCATGTTTCTACACTTTTAAATAAAATACTTTTCT  426

seq1  CTCTACATGTGTGTGTCTGTCTCTCTGTCCATGTCCCCATGTGTATAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATGTGTGTGTCTGTCTCTCTGTCCATGTCCCCATGTGTATAGGA  476

seq1  CATAAGAAAGCATCAAATTCCCTAGAGCTAGAGTTACAAGTGATTGTGAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAAGCATCAAATTCCCTAGAGCTAGAGTTACAAGTGATTGTGAC  526

seq1  CTACCCAAAATAGGTACTGGGAATCAAATTTGGGACTTCCGGAAGATCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAAATAGGTACTGGGAATCAAATTTGGGACTTCCGGAAGATCAG  576

seq1  TATATGCCCTTCATCACTGAACAATCTCTCTAGCCTAGCATGTTCCCACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCCTTCATCACTGAACAATCTCTCTAGCCTAGCATGTTCCCACA  626

seq1  TTCTGAAGTACCCCCAGTCGATGTCTGTTTTGCCATGAAGCAGATTCTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTACCCCCAGTCGATGTCTGTTTTGCCATGAAGCAGATTCTTA  676

seq1  AAAAAACAGAGCAAACCAAACAAACAAAAAACCTTTTTCAACCAAGGTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAGAGCAAACCAAACAAACAAAAAACCTTTTTCAACCAAGGTAT  726

seq1  GACTTGAAAGGATCACAGACATTAACATTAATATTTCTAAATATACTACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAAAGGATCACAGACATTAACATTAATATTTCTAAATATACTACA  776

seq1  ATATTTAAAAAGGATTTCATGCTACTTAAATGCATGTAAATACTGGCAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAAAAGGATTTCATGCTACTTAAATGCATGTAAATACTGGCAAT  826

seq1  TATTTTGTGTTTAGACAGAAAACGTATAAGGAAGGAACTTATGAAGCTTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGTTTAGACAGAAAACGTATAAGGAAGGAACTTATGAAGCTTA  876

seq1  TCAGAATCTAATTTGTTATACATAACTGTATTTACATTACATTTCAGCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCTAATTTGTTATACATAACTGTATTTACATTACATTTCAGCCT  926

seq1  AGTAAATAGAGTTATTTTATTCTATTCATCATAAATAATAATTACTTAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATAGAGTTATTTTATTCTATTCATCATAAATAATAATTACTTAAA  976

seq1  CCCTTCCCATGGAAATATCACAATGTTTCATTTGATGTAACTCAGAAATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCCATGGAAATATCACAATGTTTCATTTGATGTAACTCAGAAATC  1026

seq1  TGAGTACTACATATCCTTGAATGTTGAGATGATTATAACATTGTTCTACG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTACATATCCTTGAATGTTGAGATGATTATAACATTGTTCTACG  1076

seq1  AGGGAAAAGGTCCATGTCAACGAGATGTATAGTAAAGTACCATTGAGGGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGGTCCATGTCAACGAGATGTATAGTAAAGTACCATTGAGGGT  1126

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1132


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