BAC Information

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BAC

Clone NameB6Ng01-280H17
Chromosome10 (Build37)
Map Location 24,586,292 - 24,587,480
singlet/doubletsinglet
Overlap genenone
Upstream geneVnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9, Stx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3
Downstream geneCrsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800, Epb4.1l2, 2010003K15Rik, EG667513, LOC667519, LOC628697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280H17.bB6Ng01-280H17.g
ACCGA080196GA080197
length1,206603
definitionB6Ng01-280H17.b B6Ng01-280H17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccagagcagaaggagaaagaagtaagaaagtcagatataatag
cataattatgcacaccaaggacaactgaaaagcagtcacacacaaatgaa
atctatacagccattgtttagggctaaggttaggagaaatgggaataact
attttttacaaagagctgcctcggactactgagatgtctccatcccagac
tactgctggcagtccctgtcattgcatgctgtccctagtattttatatta
agaaatattgtttagctgagcagtggaggtacacgcctttaatcccagaa
cttgggaggcagatgcaggatttccaagttcgcggccagcctggtctaca
gagtgagttccaggacagcccgggctatacagagaaaccctgtcttaaag
aaaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaaatactgtttaattttctgctaccagaagtgactacagcaa
agcttctaggagactgagtccctgctgagttatcacctagttactggcta
catgagaaagatgcccagaagaaattcaggaggctgtgacagagtgattg
tgcacaaatatccgtggtgccagggatgaagacttatcaacttgaatatt
gccctgaatccttcagtaaatctccactgagaaaaaactggatccttggg
tttaacccagaaaatattttccagaaaaaacaaagtatgaagtagagttg
gggtttcttttaaacagggccaaggagatggctcaggggttcaggcaaat
gctggtgacctgaactcaatccctggaacccacagttgcccccctgacct
cacagttgacccctgaccctgacactcacaccgtgggcacttgcacatac
atatgtaaacaaatgtaaaatttatctgtgaattttatttgagattttta
tagatgtatacattgaagtatgatccgatttattcccccgtttgctgctc
caattcttccttcgtattgccctcagcatgcccttccttcccagccttca
tggccttatttttgtttacacccacttagggtcttagcctagggcctgcc
ttatacccacacagaattataggtgccaaccaccttagtagtggtctcaa
cttccaagctgcacttccatgcagctctctttgtggggtgacccccacat
atagaa
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataagtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtttctacagagacaaagtttggagctgtgacga
aaggatggaccatctagagactgccatatccggggatccatcccataatc
agcctccaaacgctgacaccattgcatacactagcaagattgtgctgata
ggaccctgatatagctgtctctagtgagactacgccggggcctagcaaac
acataagtggttgctcacagtcagctattggatggatcacagggccccca
atggaggagctagagaaaatacccaaggagctaaagggatctgcaaccct
ataggtggaacaacattatgaactaaccagtacccaggagctctggactc
tagctgcatatgtatcaaaagatggcctagtcggccatcactggaaagag
aggaccattggacttgcaaactttatatgctccagtacaggggaacgcca
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_24586292_24587480
seq2: B6Ng01-280H17.b_44_1249

seq1  GAATTCACCAGAGCAGAAGGAGAAAGAAGTAAGAAAGTCAGATATAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGAGCAGAAGGAGAAAGAAGTAAGAAAGTCAGATATAATAG  50

seq1  CATAATTATGCACACCAAGGACAACTGAAAAGCAGTCACACACAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTATGCACACCAAGGACAACTGAAAAGCAGTCACACACAAATGAA  100

seq1  ATCTATACAGCCATTGTTTAGGGCTAAGGTTAGGAGAAATGGGAATAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACAGCCATTGTTTAGGGCTAAGGTTAGGAGAAATGGGAATAACT  150

seq1  ATTTTTTACAAAGAGCTGCCTCGGACTACTGAGATGTCTCCATCCCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACAAAGAGCTGCCTCGGACTACTGAGATGTCTCCATCCCAGAC  200

seq1  TACTGCTGGCAGTCCCTGTCATTGCATGCTGTCCCTAGTATTTTATATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGGCAGTCCCTGTCATTGCATGCTGTCCCTAGTATTTTATATTA  250

seq1  AGAAATATTGTTTAGCTGAGCAGTGGAGGTACACGCCTTTAATCCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTGTTTAGCTGAGCAGTGGAGGTACACGCCTTTAATCCCAGAA  300

seq1  CTTGGGAGGCAGATGCAGGATTTCCAAGTTCGCGGCCAGCCTGGTCTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGCAGATGCAGGATTTCCAAGTTCGCGGCCAGCCTGGTCTACA  350

seq1  GAGTGAGTTCCAGGACAGCCCGGGCTATACAGAGAAACCCTGTCTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTTCCAGGACAGCCCGGGCTATACAGAGAAACCCTGTCTTAAAG  400

seq1  AAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  450

seq1  AAGAAAGAAAATACTGTTTAATTTTCTGCTACCAGAAGTGACTACAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAATACTGTTTAATTTTCTGCTACCAGAAGTGACTACAGCAA  500

seq1  AGCTTCTAGGAGACTGAGTCCCTGCTGAGTTATCACCTAGTTACTGGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTAGGAGACTGAGTCCCTGCTGAGTTATCACCTAGTTACTGGCTA  550

seq1  CATGAGAAAGATGCCCAGAAGAAATTCAGGAGGCTGTGACAGAGTGATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAAAGATGCCCAGAAGAAATTCAGGAGGCTGTGACAGAGTGATTG  600

seq1  TGCACAAATATCCGTGGTGCCAGGGATGAAGACTTATCAACTTGAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATATCCGTGGTGCCAGGGATGAAGACTTATCAACTTGAATATT  650

seq1  GCCCTGAATCCTTCAGTAAATCTCCACTGAGAAAAAACTGGATCCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAATCCTTCAGTAAATCTCCACTGAGAAAAAACTGGATCCTTGGG  700

seq1  TTTAACCCAGAAAATATTTTCCAGAAAAAACAAAGTATGAAGTAGAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCCAGAAAATATTTTCCAGAAAAAACAAAGTATGAAGTAGAGTTG  750

seq1  GGGTTTCTTTTAAACAGGGCCAAGGAGATGGCTCAGGGGTTCAGGCAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTTTTAAACAGGGCCAAGGAGATGGCTCAGGGGTTCAGGCAAAT  800

seq1  GCTGGTGACCTGAACTCAATCCCTGGAACCCACAGTTG-CCCCCTGACCT  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGGTGACCTGAACTCAATCCCTGGAACCCACAGTTGCCCCCCTGACCT  850

seq1  CACAGTTGACCCCTGACCTTGACACTCACACCGT-GGCACTTGCACATAC  898
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  CACAGTTGACCCCTGACCCTGACACTCACACCGTGGGCACTTGCACATAC  900

seq1  ATATGTAAACAAATGTAAAAATTTATCTGTGAATTT--ATTGAGAATTTT  946
      |||||||||||||||| |||||||||||||||||||   |||||| ||||
seq2  ATATGTAAACAAATGT-AAAATTTATCTGTGAATTTTATTTGAGATTTTT  949

seq1  ATAGATGTATACAATGAAGTATGATCCGATTTAT--CCCCGTTTGCTGCT  994
      ||||||||||||| ||||||||||||||||||||  ||||||||||||||
seq2  ATAGATGTATACATTGAAGTATGATCCGATTTATTCCCCCGTTTGCTGCT  999

seq1  CCAATTCT--CCTCGTATTG-CCTCAGCATGCCCT--CCTCCCAG-CTTC  1038
      ||||||||  | |||||||| ||||||||||||||  | |||||| ||||
seq2  CCAATTCTTCCTTCGTATTGCCCTCAGCATGCCCTTCCTTCCCAGCCTTC  1049

seq1  AT-GCCTTA-TTTTGTTTACAACCCACT--AGGTC-TAG-CTAGGG-CTG  1081
      || |||||| |||||||||| |||||||   |||| ||| |||||| |||
seq2  ATGGCCTTATTTTTGTTTAC-ACCCACTTAGGGTCTTAGCCTAGGGCCTG  1098

seq1  -CTTATACACACACAGA--TATA-GTG-CAACCAACTATAGTAGTGGTTC  1126
       ||||||| ||||||||  |||| ||| |||||| || ||||||||| ||
seq2  CCTTATACCCACACAGAATTATAGGTGCCAACCACCT-TAGTAGTGG-TC  1146

seq1  TCAACCTTCCCAAAACTGCAACCCTTCAATGCAGTTCTCTTTGT--GGTG  1174
      |||| |||||  || |||||   |||| |||||| |||||||||  ||||
seq2  TCAA-CTTCC--AAGCTGCA---CTTCCATGCAGCTCTCTTTGTGGGGTG  1190

seq1  ACCCCAAC-TATAGAA  1189
      ||||| || |||||||
seq2  ACCCCCACATATAGAA  1206