BAC Information

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BAC

Clone NameB6Ng01-280L03
Chromosome10 (Build37)
Map Location 16,316,105 - 16,446,543
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC637043, LOC100039492, LOC671439, LOC382457
Downstream geneLOC546472, LOC100039576, LOC627511, Cited2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280L03.bB6Ng01-280L03.g
ACCGA080358GA080359
length1,143703
definitionB6Ng01-280L03.b B6Ng01-280L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,316,105 - 16,317,261)(16,445,841 - 16,446,543)
sequence
gaattcttccagattaatttctctaaaaagctgttttttaaatctaggaa
agctaatcattttcttaataacgatgcttttccgaaagggacacacacac
acgcacacacagacacacacacagacacatacacacacccatacacacac
acaaacacacacacacacacacacacacacacacacacacactttctagt
ttgctttttgctttttcaggtgtttaggttattggaatttgtcaaaagca
ttttctgcattgcctgacatgatgttgtgattcctgctagagggtttatg
tataatttaccattttcttttctttatttttgatgaagtaattatataac
tagagatcctcactcctttttaattgaaactatttacttgcaagtagttt
ttaaataaattctttgagaatttcatgtaatatattttgatcttatccac
cgcaagtcctctcacactccttccaggtaaaccctctactggctcccagt
tttgtgtcctttgttattacgtataattttaaataatgtggttcaatttc
tgcagccaatatgcttatgaatgtaagactatcttctgtagcgtggttga
tctacgagaagcccatttttaaggaaaactgatttttcctcaggaggtat
caactgacaatagcattttgtgagggattggactcatgactatcttactt
ccatgctagaatgttgactggtttgttcttgtataggtcttggacagata
tactgtgagctaatgaactcatgagtcctgtgacctccggaaaaccttgt
tttgctctaagctctggcatctgcaatcttccctcacattcttctgtggc
agcctctgaggcttcaaaggataactcgggtatctaatttgtgactgggt
acctctccaacatctattctgcacttttgattaggtgaagctcatgatta
ctgctgtctatagaaaagaaacttttctgatgaggtttgggaactacact
aatctatgtgtagagagttgcttatttgttttttatgactaagattccag
tctcaatgtttttaaagaattactattgtacagtcaccaatgaatgatca
atgtttttataggtgcttttaaatatttgtaaggataaaaaga

gaattcttctgcaaaacaattttgacacagaatattacaaaatattgact
atgttgaaattcattcatttttttagcacaaaacctactctgatttgaaa
ttattgagtcttctattgccatgataaaattaaaataaaaatggatgagg
ctatatccttctagaatgctagtgacggttatgtcattatcaatggataa
aaacctaatctgaaattctggaattaataataaattaagtttaattaatg
aacatataggattaatgataaccgtcacaaaccattgttaagcatattga
taggaaagatataatttagtcaacttaatttctacttaactgaagtgttt
atgatagaacttataaaacttgtttatctgctgtccacatagggtgcgtt
attctcaaatgtgatacctgctaaagtggtttgggcttgggctagtgtcc
ctttaagtacaaaactaaataaaataagtctctaagagttatgttttgca
gtagtgtaaaaagagacactgagattcaagcatcttggcttgtgccttct
ttcttgtttagcttctttgggtctgtggagtatagcgtgggtatactgtg
acaatgcaggatacttgaatctcacctagaatagggaataaaacagtcat
aagaggcagatggaaggagggaactgggtgggagagggaatgggggattc
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_16316105_16317261
seq2: B6Ng01-280L03.b_47_1189

seq1  GAATTCTTCCAGATTAATTTCTCTAAAAAGCTGTTTTTTAAATCTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCAGATTAATTTCTCTAAAAAGCTGTTTTTTAAATCTAGGAA  50

seq1  AGCTAATCATTTTCTTAATAACGATGCTTTTCCGAAAGGGACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAATCATTTTCTTAATAACGATGCTTTTCCGAAAGGGACACACACAC  100

seq1  ACGCACACACAGACACACACACAGACACATACACACACCCATACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACACACAGACACACACACAGACACATACACACACCCATACACACAC  150

seq1  ACAAACACACACACACACACACACACACACACACACACACACTTTCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACACACACACACACACACACACACACACACACACACTTTCTAGT  200

seq1  TTGCTTTTTGCTTTTTCAGGTGTTTAGGTTATTGGAATTTGTCAAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTTTGCTTTTTCAGGTGTTTAGGTTATTGGAATTTGTCAAAAGCA  250

seq1  TTTTCTGCATTGCCTGACATGATGTTGTGATTCCTGCTAGAGGGTTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCATTGCCTGACATGATGTTGTGATTCCTGCTAGAGGGTTTATG  300

seq1  TATAATTTACCATTTTCTTTTCTTTATTTTTGATGAAGTAATTATATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTACCATTTTCTTTTCTTTATTTTTGATGAAGTAATTATATAAC  350

seq1  TAGAGATCCTCACTCCTTTTTAATTGAAACTATTTACTTGCAAGTAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATCCTCACTCCTTTTTAATTGAAACTATTTACTTGCAAGTAGTTT  400

seq1  TTAAATAAATTCTTTGAGAATTTCATGTAATATATTTTGATCTTATCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAATTCTTTGAGAATTTCATGTAATATATTTTGATCTTATCCAC  450

seq1  CGCAAGTCCTCTCACACTCCTTCCAGGTAAACCCTCTACTGGCTCCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGTCCTCTCACACTCCTTCCAGGTAAACCCTCTACTGGCTCCCAGT  500

seq1  TTTGTGTCCTTTGTTATTACGTATAATTTTAAATAATGTGGTTCAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCCTTTGTTATTACGTATAATTTTAAATAATGTGGTTCAATTTC  550

seq1  TGCAGCCAATATGCTTATGAATGTAAGACTATCTTCTGTAGCGTGGTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAATATGCTTATGAATGTAAGACTATCTTCTGTAGCGTGGTTGA  600

seq1  TCTACGAGAAGCCCATTTTTAAGGAAAACTGATTTTTCCTCAGGAGGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGAGAAGCCCATTTTTAAGGAAAACTGATTTTTCCTCAGGAGGTAT  650

seq1  CAACTGACAATAGCATTTTGTGAGGGATTGGACTCATGACTATCTTACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGACAATAGCATTTTGTGAGGGATTGGACTCATGACTATCTTACTT  700

seq1  CCATGCTAGAATGTTGACTGGTTTGTTCTTGTATAGGTCTTGGACAGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTAGAATGTTGACTGGTTTGTTCTTGTATAGGTCTTGGACAGATA  750

seq1  TACTGTGAGCTAATGAACTCATGAGTCCTGTGACCTCCGGAAAACCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGAGCTAATGAACTCATGAGTCCTGTGACCTCCGGAAAACCTTGT  800

seq1  TTTGCTCTAAGCTCTGGCATCTGCAATCTTCCCTCACATTCTTCTGTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTAAGCTCTGGCATCTGCAATCTTCCCTCACATTCTTCTGTGGC  850

seq1  AGCCTCTGAGGCTTCAAAGGATAACTCGGGTATCTAATTTGTGACTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGAGGCTTCAAAGGATAACTCGGGTATCTAATTTGTGACTGGGT  900

seq1  ACCTCTCCAACATCTATTCTGCACTTTTGATTAGGTGAAGCTCATGATTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCAACATCTATTCTGCACTTTTGATTAGGTGAAGCTCATGATTA  950

seq1  CTGCTGTCTATTAGAAAAAGAAACTTTTCTGATGAGGTTTGGGAACTACA  1000
      |||||||||| ||| |||||||||||||||||||||||||||||||||||
seq2  CTGCTGTCTA-TAG-AAAAGAAACTTTTCTGATGAGGTTTGGGAACTACA  998

seq1  CTAATCTATGTGTAGAGAGTTGCTTATTTGTTTTTATTGACTAAGGATTT  1050
      |||||||||||||||||||||||||||||||||||  ||||||||   ||
seq2  CTAATCTATGTGTAGAGAGTTGCTTATTTGTTTTTTATGACTAAG--ATT  1046

seq1  CCAGTCTCAATGTTTTTTAAAGAATTTACTA-TGTACCAGTCAACCAATT  1099
      |||||||||||| ||||||||||| |||||| |||| ||||| |||||| 
seq2  CCAGTCTCAATG-TTTTTAAAGAA-TTACTATTGTA-CAGTC-ACCAAT-  1091

seq1  GAAATGAATCATGTTTTTTATAAAGTTGCTTTTTAAATATTTGTAAGGTA  1149
        |||||   |||||||   || || ||| |||||||||||||||||| |
seq2  -GAATGATCAATGTTTT---TATAGGTGC-TTTTAAATATTTGTAAGG-A  1135

seq1  TAAAAAGA  1157
      ||||||||
seq2  TAAAAAGA  1143


seq1: chr10_16445841_16446543
seq2: B6Ng01-280L03.g_66_768 (reverse)

seq1  CCTGAATCCCCCATTCCCTCTCCCACCCAGTTCCCTCCTTCCATCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATCCCCCATTCCCTCTCCCACCCAGTTCCCTCCTTCCATCTGCCT  50

seq1  CTTATGACTGTTTTATTCCCTATTCTAGGTGAGATTCAAGTATCCTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGACTGTTTTATTCCCTATTCTAGGTGAGATTCAAGTATCCTGCAT  100

seq1  TGTCACAGTATACCCACGCTATACTCCACAGACCCAAAGAAGCTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGTATACCCACGCTATACTCCACAGACCCAAAGAAGCTAAACAA  150

seq1  GAAAGAAGGCACAAGCCAAGATGCTTGAATCTCAGTGTCTCTTTTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGGCACAAGCCAAGATGCTTGAATCTCAGTGTCTCTTTTTACAC  200

seq1  TACTGCAAAACATAACTCTTAGAGACTTATTTTATTTAGTTTTGTACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAAAACATAACTCTTAGAGACTTATTTTATTTAGTTTTGTACTTA  250

seq1  AAGGGACACTAGCCCAAGCCCAAACCACTTTAGCAGGTATCACATTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACTAGCCCAAGCCCAAACCACTTTAGCAGGTATCACATTTGAG  300

seq1  AATAACGCACCCTATGTGGACAGCAGATAAACAAGTTTTATAAGTTCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACGCACCCTATGTGGACAGCAGATAAACAAGTTTTATAAGTTCTAT  350

seq1  CATAAACACTTCAGTTAAGTAGAAATTAAGTTGACTAAATTATATCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACACTTCAGTTAAGTAGAAATTAAGTTGACTAAATTATATCTTTC  400

seq1  CTATCAATATGCTTAACAATGGTTTGTGACGGTTATCATTAATCCTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCAATATGCTTAACAATGGTTTGTGACGGTTATCATTAATCCTATAT  450

seq1  GTTCATTAATTAAACTTAATTTATTATTAATTCCAGAATTTCAGATTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTAATTAAACTTAATTTATTATTAATTCCAGAATTTCAGATTAGG  500

seq1  TTTTTATCCATTGATAATGACATAACCGTCACTAGCATTCTAGAAGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCATTGATAATGACATAACCGTCACTAGCATTCTAGAAGGATA  550

seq1  TAGCCTCATCCATTTTTATTTTAATTTTATCATGGCAATAGAAGACTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCATCCATTTTTATTTTAATTTTATCATGGCAATAGAAGACTCAA  600

seq1  TAATTTCAAATCAGAGTAGGTTTTGTGCTAAAAAAATGAATGAATTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAATCAGAGTAGGTTTTGTGCTAAAAAAATGAATGAATTTCAA  650

seq1  CATAGTCAATATTTTGTAATATTCTGTGTCAAAATTGTTTTGCAGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAATATTTTGTAATATTCTGTGTCAAAATTGTTTTGCAGAAGAA  700

seq1  TTC  703
      |||
seq2  TTC  703


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