BAC Information

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BAC

Clone NameB6Ng01-280M04
Chromosome10 (Build37)
Map Location 126,505,092 - 126,633,808
singlet/doubletdoublet
Overlap geneTspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3
Upstream geneLOC100043547, LOC668336, Xrcc6bp1, LOC622567, Ctdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4
Downstream genePip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280M04.bB6Ng01-280M04.g
ACCGA080407GA080408
length1221,144
definitionB6Ng01-280M04.b B6Ng01-280M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,633,687 - 126,633,808)(126,505,092 - 126,506,230)
sequence
tctgttcacgcagacttcctgggaaagctatctgcttagaggccaggaag
agtccagcagggtcctgggaaagtgaaggagtgaccagtcctccagttca
ggggggaggggatggagagggg
gaattcaaggtcttccttggatacagagctagctagaaacagcctaggct
gcagagatgctatctgggaggtcaaaagtctcataggaaggcactggggt
tggctcgagggtccttttgattccggaatctcattgctagccaaacacca
aggatctacgggagaggaagagagaaaggttatttctggaccatggggtt
gaaggcttgagtgtgtacatgaggagtcattacctctgtgaaactaaaga
agagcccaacacctcctaggatcttgagggctttgtctgaatgtttaagg
aacctctccccacacatctggcatgtagagctcttagttttgcacacctg
gtaacagacatatatagagaattcaaagttgctcacctgccctgtccaaa
aagctgtagtgaatgtcccaggaatgactaatccttcatcttaccgcact
acaggaagtatcatcttgtaggcgcagggttgtaaggttgaacaagccac
agcagtcaaaacttctctccagttcatgccgggtactgttgctcaagacc
gaccacgaagcattgatgacatctgcctagagagcacacaggcattaaca
ttcgttagaacattattagacattagtctcctcacatacccttcggttca
ggagtctccatttccctgctttagcaaggaaaaccccacagagaccgcag
cgtgatcattggtaatgtgaggtgtctcagggtctctctgcatcttgggg
aattaaccatatgtgtcagggagcacacatcttgtggaagcagtgggtct
gagcaaggatgagatgaaaggggtcagataaaagtggagaaagcaagcaa
gtacatgaaagggcttacccttacctgtgtgtttctgtttaatagccaga
catgagcaagagattccaaactgggaagatgaagaccaaacctaggatga
tcatatactgagaagaagttagggcaaaaagacctgttttccatttaaat
accttcattcaggagacagacgaacaagctgtggtgtagccagctagtgt
gagcttcaagctttagactacatagccatagcccagttttcttgttctta
aatctcaccactgtaaatctacctgctagtgtggcaaggcaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126633687_126633808
seq2: B6Ng01-280M04.b_50_171 (reverse)

seq1  CCCCTCTCCATCCCCTCCCCCCTGAACTGGAGGACTGGTCACTCCTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCCATCCCCTCCCCCCTGAACTGGAGGACTGGTCACTCCTTCAC  50

seq1  TTTCCCAGGACCCTGCTGGACTCTTCCTGGCCTCTAAGCAGATAGCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAGGACCCTGCTGGACTCTTCCTGGCCTCTAAGCAGATAGCTTTC  100

seq1  CCAGGAAGTCTGCGTGAACAGA  122
      ||||||||||||||||||||||
seq2  CCAGGAAGTCTGCGTGAACAGA  122

seq1: chr10_126505092_126506230
seq2: B6Ng01-280M04.g_69_1212

seq1  GAATTCAAGGTCTTCCTTGGATACAGAGCTAGCTAGAAACAGCCTAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCTTCCTTGGATACAGAGCTAGCTAGAAACAGCCTAGGCT  50

seq1  GCAGAGATGCTATCTGGGAGGTCAAAAGTCTCATAGGAAGGCACTGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGATGCTATCTGGGAGGTCAAAAGTCTCATAGGAAGGCACTGGGGT  100

seq1  TGGCTCGAGGGTCCTTTTGATTCCGGAATCTCATTGCTAGCCAAACACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCGAGGGTCCTTTTGATTCCGGAATCTCATTGCTAGCCAAACACCA  150

seq1  AGGATCTACGGGAGAGGAAGAGAGAAAGGTTATTTCTGGACCATGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTACGGGAGAGGAAGAGAGAAAGGTTATTTCTGGACCATGGGGTT  200

seq1  GAAGGCTTGAGTGTGTACATGAGGAGTCATTACCTCTGTGAAACTAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTGAGTGTGTACATGAGGAGTCATTACCTCTGTGAAACTAAAGA  250

seq1  AGAGCCCAACACCTCCTAGGATCTTGAGGGCTTTGTCTGAATGTTTAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAACACCTCCTAGGATCTTGAGGGCTTTGTCTGAATGTTTAAGG  300

seq1  AACCTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTTGCACACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTCCCCACACATCTGGCATGTAGAGCTCTTAGTTTTGCACACCTG  350

seq1  GTAACAGACATATATAGAGAATTCAAAGTTGCTCACCTGCCCTGTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGACATATATAGAGAATTCAAAGTTGCTCACCTGCCCTGTCCAAA  400

seq1  AAGCTGTAGTGAATGTCCCAGGAATGACTAATCCTTCATCTTACCGCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTAGTGAATGTCCCAGGAATGACTAATCCTTCATCTTACCGCACT  450

seq1  ACAGGAAGTATCATCTTGTAGGCGCAGGGTTGTAAGGTTGAACAAGCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGTATCATCTTGTAGGCGCAGGGTTGTAAGGTTGAACAAGCCAC  500

seq1  AGCAGTCAAAACTTCTCTCCAGTTCATGCCGGGTACTGTTGCTCAAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCAAAACTTCTCTCCAGTTCATGCCGGGTACTGTTGCTCAAGACC  550

seq1  GACCACGAAGCATTGATGACATCTGCCTAGAGAGCACACAGGCATTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGAAGCATTGATGACATCTGCCTAGAGAGCACACAGGCATTAACA  600

seq1  TTCGTTAGAACATTATTAGACATTAGTCTCCTCACATACCCTTCGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTAGAACATTATTAGACATTAGTCTCCTCACATACCCTTCGGTTCA  650

seq1  GGAGTCTCCATTTCCCTGCTTTAGCAAGGAAAACCCCACAGAGACCGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCTCCATTTCCCTGCTTTAGCAAGGAAAACCCCACAGAGACCGCAG  700

seq1  CGTGATCATTGGTAATGTGAGGTGTCTCAGGGTCTCTCTGCATCTTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCATTGGTAATGTGAGGTGTCTCAGGGTCTCTCTGCATCTTGGGG  750

seq1  AATTAACCATATGTGTCAGGGAGCACACATC-TGTGGAAGCAGTGGGTCT  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATTAACCATATGTGTCAGGGAGCACACATCTTGTGGAAGCAGTGGGTCT  800

seq1  GAGCAAGGATGAGATG-AAGGGGTCAGATAAAAGTGGAGAAAGCAAGCAA  848
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCAAGGATGAGATGAAAGGGGTCAGATAAAAGTGGAGAAAGCAAGCAA  850

seq1  GTACATGAAAGGGCTTACCCTTACCTGTGTGTTTCTG-TTAATAGCCAGA  897
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTACATGAAAGGGCTTACCCTTACCTGTGTGTTTCTGTTTAATAGCCAGA  900

seq1  CATGAGCAAGAGATTCCAAACT-GGAAGATGAAGACCAAACCTAGGATGA  946
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CATGAGCAAGAGATTCCAAACTGGGAAGATGAAGACCAAACCTAGGATGA  950

seq1  TCATATACTGAGAAGAAGTTAGGGCAAAAAGACCTGTTTTCCATTTAAAA  996
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCATATACTGAGAAGAAGTTAGGGCAAAAAGACCTGTTTTCCATTT-AAA  999

seq1  TACC-TCATTCAGGGAGACAGACAGACAAAGCTGTGTGGTAGCCAGCCTA  1045
      |||| ||||||| |||||||||| ||  ||||||||  |||||||| |||
seq2  TACCTTCATTCA-GGAGACAGAC-GAACAAGCTGTGGTGTAGCCAG-CTA  1046

seq1  GTGTGAGCTCCAAGC-TAGGACTACATAG-CATAGGCCCAG-TTTCTGTC  1092
      ||||||||| ||||| |  |||||||||| |||| |||||| |||||   
seq2  GTGTGAGCTTCAAGCTTTAGACTACATAGCCATA-GCCCAGTTTTCTTGT  1095

seq1  TTTAAAATCTCACCACTGTAATTCTAACTGCGA-TGTGGC-AGGCAAGG  1139
      | | ||||||||||||||||| |||| |||| | |||||| ||||||||
seq2  TCTTAAATCTCACCACTGTAAATCTACCTGCTAGTGTGGCAAGGCAAGG  1144