BAC Information

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BAC

Clone NameB6Ng01-280N20
Chromosome10 (Build37)
Map Location 9,488,604 - 9,634,588
singlet/doubletdoublet
Overlap geneStxbp5, LOC100039238
Upstream geneSash1, EG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-280N20.bB6Ng01-280N20.g
ACCGA080487GA080488
length7751,147
definitionB6Ng01-280N20.b B6Ng01-280N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,633,814 - 9,634,588)(9,488,604 - 9,489,745)
sequence
gaattctctgcacagatgtccaaagccgagatctcactttgcccggacat
ttgctgagtcaagccacacttctctgagccttatcgccttgatcctaaaa
cagggtcagtgatatgtaggtgctgttggaagtaccaactagacaataag
aataaatttcttaatctaagaaattcattttactgtaatgatcccacaga
ttaaaaacgttacaaggctagattaaggtagccaaacaaacaagctcagc
agcaaactctacgcctcagtgaacagttatacagatgcaatgttaacatc
ttcgtttttcagatttctactgaatattttccttccttccttccttcctt
ccttccttccttccttccttattttagtatcagtgtagtattcagttttg
ttgagtttctgagtttcttaggtagactaggcagcttggtaacagagaga
gaagtgatcctacgctgagcctgaggcacagttaaaatcctgagccaaat
ccagttcaacatatactcaggggccaagtcagtccaggaaacgtatatga
cttgatctggaatcagaaaggactcaaaacatacactataaactactatt
taattcatactggggatgagacactgtatttcctcagcctggagaccttg
aaaaagttttaattaaccagtactgaccatgtggaggttaatctatgtat
atgtagaggtatatggcatatatgtctatgatgtatatgtatatgatgtg
tacatatatgatgtatatgatgtat

gaattctaatggcttgttgctcacctgaagattttcacatgtctcctgac
tgtaggtgagtctctggatttctgtaggtgaaacaaggtataaggcttgt
ccgttgttggcgaagcagaatgtcctggctatccgcatgttggtaagggg
caggtagtagacatccaggagaggcctcaagcttggcaaacttgagggaa
aatacatcatttgttggtaatatgtaataagttatttacagaagctacag
gacaggtacaatgtacaatgatactatatatgaagacagcacactcagaa
gccactactctgaatgctagcctacaaaattaatgacagagaaaaagaaa
aatcactggtaaattgtttagtttatatagctagagagggaaaatataat
ctgtacttttcatatccttgtttgttattaaacatattttcagtgtataa
acaacgcagtattttttcaagttgaattttataatgtgacccaagcagga
atactgtatgtgttacagaagggcctcattcttacctgaaagtcatgata
tggccattggcacagaagcaggcgaggcagacactgttactcagtgcgac
aatgtctccgcggagcacgaaggacgtctcggtgatgttctgcttgtatg
cacagctctgggttggcagtgacatgacctttgcttgcttttcagagcat
atcactgcgtactggttctcactaatttcctgagaagaggagggggacac
tgagacaggtcgccgctttttcaatttctccttttcgtctttttcttcag
caacgttgtgttctttccagggttcgtatgcaggagacattaagcagccc
gtggcatccagaaatgccatcctcaagatttgcaccttttaacctcaata
tagtacctagaatgtagaagtttagtagatactttccattttacaattca
gagtaaatatgcttattccaactctgatactaaatccacacacatctgtg
actcaacgctgcactggaatatacagggcactggataaaattccaaaacc
aagccttgtagtcagcgttctgaaaaacaatgtcaattatttatatggtt
ccaaccattaatgtcaaatgtttaatactttacatcaatatgaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9633814_9634588
seq2: B6Ng01-280N20.b_47_821 (reverse)

seq1  ATACATCATATACATCATATATGTACACATCATATACATATACATCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCATATACATCATATATGTACACATCATATACATATACATCATAG  50

seq1  ACATATATGCCATATACCTCTACATATACATAGATTAACCTCCACATGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATGCCATATACCTCTACATATACATAGATTAACCTCCACATGGT  100

seq1  CAGTACTGGTTAATTAAAACTTTTTCAAGGTCTCCAGGCTGAGGAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTGGTTAATTAAAACTTTTTCAAGGTCTCCAGGCTGAGGAAATAC  150

seq1  AGTGTCTCATCCCCAGTATGAATTAAATAGTAGTTTATAGTGTATGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTCATCCCCAGTATGAATTAAATAGTAGTTTATAGTGTATGTTTT  200

seq1  GAGTCCTTTCTGATTCCAGATCAAGTCATATACGTTTCCTGGACTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTTCTGATTCCAGATCAAGTCATATACGTTTCCTGGACTGACTT  250

seq1  GGCCCCTGAGTATATGTTGAACTGGATTTGGCTCAGGATTTTAACTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTGAGTATATGTTGAACTGGATTTGGCTCAGGATTTTAACTGTGC  300

seq1  CTCAGGCTCAGCGTAGGATCACTTCTCTCTCTGTTACCAAGCTGCCTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCAGCGTAGGATCACTTCTCTCTCTGTTACCAAGCTGCCTAGT  350

seq1  CTACCTAAGAAACTCAGAAACTCAACAAAACTGAATACTACACTGATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAAGAAACTCAGAAACTCAACAAAACTGAATACTACACTGATACT  400

seq1  AAAATAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAAT  450

seq1  ATTCAGTAGAAATCTGAAAAACGAAGATGTTAACATTGCATCTGTATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAGAAATCTGAAAAACGAAGATGTTAACATTGCATCTGTATAAC  500

seq1  TGTTCACTGAGGCGTAGAGTTTGCTGCTGAGCTTGTTTGTTTGGCTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTGAGGCGTAGAGTTTGCTGCTGAGCTTGTTTGTTTGGCTACCT  550

seq1  TAATCTAGCCTTGTAACGTTTTTAATCTGTGGGATCATTACAGTAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTAGCCTTGTAACGTTTTTAATCTGTGGGATCATTACAGTAAAATG  600

seq1  AATTTCTTAGATTAAGAAATTTATTCTTATTGTCTAGTTGGTACTTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTAGATTAAGAAATTTATTCTTATTGTCTAGTTGGTACTTCCAA  650

seq1  CAGCACCTACATATCACTGACCCTGTTTTAGGATCAAGGCGATAAGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTACATATCACTGACCCTGTTTTAGGATCAAGGCGATAAGGCTC  700

seq1  AGAGAAGTGTGGCTTGACTCAGCAAATGTCCGGGCAAAGTGAGATCTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTGTGGCTTGACTCAGCAAATGTCCGGGCAAAGTGAGATCTCGG  750

seq1  CTTTGGACATCTGTGCAGAGAATTC  775
      |||||||||||||||||||||||||
seq2  CTTTGGACATCTGTGCAGAGAATTC  775


seq1: chr10_9488604_9489745
seq2: B6Ng01-280N20.g_67_1213

seq1  GAATTCTAATGGCTTGTTGCTCACCTGAAGATTTTCACATGTCTCCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGGCTTGTTGCTCACCTGAAGATTTTCACATGTCTCCTGAC  50

seq1  TGTAGGTGAGTCTCTGGATTTCTGTAGGTGAAACAAGGTATAAGGCTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGAGTCTCTGGATTTCTGTAGGTGAAACAAGGTATAAGGCTTGT  100

seq1  CCGTTGTTGGCGAAGCAGAATGTCCTGGCTATCCGCATGTTGGTAAGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTTGGCGAAGCAGAATGTCCTGGCTATCCGCATGTTGGTAAGGGG  150

seq1  CAGGTAGTAGACATCCAGGAGAGGCCTCAAGCTTGGCAAACTTGAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGTAGACATCCAGGAGAGGCCTCAAGCTTGGCAAACTTGAGGGAA  200

seq1  AATACATCATTTGTTGGTAATATGTAATAAGTTATTTACAGAAGCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATCATTTGTTGGTAATATGTAATAAGTTATTTACAGAAGCTACAG  250

seq1  GACAGGTACAATGTACAATGATACTATATATGAAGACAGCACACTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTACAATGTACAATGATACTATATATGAAGACAGCACACTCAGAA  300

seq1  GCCACTACTCTGAATGCTAGCCTACAAAATTAATGACAGAGAAAAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTACTCTGAATGCTAGCCTACAAAATTAATGACAGAGAAAAAGAAA  350

seq1  AATCACTGGTAAATTGTTTAGTTTATATAGCTAGAGAGGGAAAATATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGGTAAATTGTTTAGTTTATATAGCTAGAGAGGGAAAATATAAT  400

seq1  CTGTACTTTTCATATCCTTGTTTGTTATTAAACATATTTTCAGTGTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTTTCATATCCTTGTTTGTTATTAAACATATTTTCAGTGTATAA  450

seq1  ACAACGCAGTATTTTTTCAAGTTGAATTTTATAATGTGACCCAAGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGCAGTATTTTTTCAAGTTGAATTTTATAATGTGACCCAAGCAGGA  500

seq1  ATACTGTATGTGTTACAGAAGGGCCTCATTCTTACCTGAAAGTCATGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTATGTGTTACAGAAGGGCCTCATTCTTACCTGAAAGTCATGATA  550

seq1  TGGCCATTGGCACAGAAGCAGGCGAGGCAGACACTGTTACTCAGTGCGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTGGCACAGAAGCAGGCGAGGCAGACACTGTTACTCAGTGCGAC  600

seq1  AATGTCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTGCTTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCCGCGGAGCACGAAGGACGTCTCGGTGATGTTCTGCTTGTATG  650

seq1  CACAGCTCTGGGTTGGCAGTGACATGACCTTTGCTTGCTTTTCAGAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTCTGGGTTGGCAGTGACATGACCTTTGCTTGCTTTTCAGAGCAT  700

seq1  ATCACTGCGTACTGGTTCTCACTAATTTCCTGAGAAGAGGAGGGGGACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCGTACTGGTTCTCACTAATTTCCTGAGAAGAGGAGGGGGACAC  750

seq1  TGAGACAGGTCGCCGCTTTTTCAATTTCTCCTTTTCGTCTTTTTCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGGTCGCCGCTTTTTCAATTTCTCCTTTTCGTCTTTTTCTTCAG  800

seq1  CAACGTTGTGTTCTTTCCAGGGTTCGTATGCAGGAGACATTAAGCAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGTTGTGTTCTTTCCAGGGTTCGTATGCAGGAGACATTAAGCAGCCC  850

seq1  GTGGCATCCAGAAATGCCATCCTCAAGA-TTGCACCTTTTAACCTCAATA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGGCATCCAGAAATGCCATCCTCAAGATTTGCACCTTTTAACCTCAATA  900

seq1  TAGTACCTAGAATGTAGAAGTTTAGTAGATAC-TTCCATTTTACAATTCA  948
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGTACCTAGAATGTAGAAGTTTAGTAGATACTTTCCATTTTACAATTCA  950

seq1  GAGTAAATATGCTTATTCCAACTCTGATACTAAATCCACACACATCTGTT  998
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGTAAATATGCTTATTCCAACTCTGATACTAAATCCACACACATCTG-T  999

seq1  GACTCAACGCTGCACTGG-ATATACAGGCCACT-GATAAAATCCAAAACC  1046
      |||||||||||||||||| ||||||||| |||| |||||||| | ||| |
seq2  GACTCAACGCTGCACTGGAATATACAGGGCACTGGATAAAATTCCAAAAC  1049

seq1  CAAGCCTTGTAGTCAGCGGTCTGAAAAAC-ATGTC-ATTA-TTATAT-GT  1092
      |||||||||||||||||| |||||||||| ||||| |||| |||||| ||
seq2  CAAGCCTTGTAGTCAGCGTTCTGAAAAACAATGTCAATTATTTATATGGT  1099

seq1  TCCAAACATAAATGTCAAATG-TTAATAATTTACAATTAAATAATGAACT  1141
      ||||| ||| ||||||||||| |||||| ||||||  | ||| |||||||
seq2  TCCAACCATTAATGTCAAATGTTTAATACTTTACA--TCAAT-ATGAACT  1146

seq1  T  1142
      |
seq2  T  1147


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