BAC Information

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BAC

Clone NameB6Ng01-281C19
Chromosome10 (Build37)
Map Location 29,532,144 - 29,636,886
singlet/doubletdoublet
Overlap genenone
Upstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
Downstream geneLOC674389, Gm232, LOC667696, LOC100040542, 2610036L11Rik, LOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281C19.bB6Ng01-281C19.g
ACCGA080718GA080719
length1,2071,077
definitionB6Ng01-281C19.b B6Ng01-281C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,532,144 - 29,533,327)(29,635,811 - 29,636,886)
sequence
gaattcacagcccatacctaaacatactaaatacaatatacagcaaacca
gtagccaacatcaaactaaatggagagaatcttgaagcaatgccactaaa
atcagggactagacaagactgctctctctctccctaactattcaagatag
tgcttgaagttcttgccagagcagttagacatactgcattttataaaata
tcaaccacagagtagctatctcattaactcactgttggtactcatatcaa
actggcttgaactgacaaacaactggacaacaaggaccaactttcctcat
cacagggaatgaaatatgtttattgattaattgttgtacaataaatgaaa
ttataatgaaaatttattaaaatgaatttaatgtattatacaaaggaaga
aagataaaagggaacttttgaatgttgatggcaaatcaagaggtaagaac
agtacactgtgcttattaaatggtttagcctttcttgaaaatatttcagt
gcaacaatcatgaaattactccacatacaaaattatcatttactgtagaa
ggaaagaacttgtacaacataattacaagacccacattagttttgtaatt
aatttctcaatattatttgctattttagtgttggagaactttgtgaccat
aattcaccctaatactcaaaataataaaagttttaaatattcttgcatct
tctgaaaaattacctattagaaaattctgtttcagtctatctgtgtgtca
taatgtccatcaatttgcacttatatttgtgttaggcaatcttacctttt
tatcttaggaccatgatctattctgaaacatatctcagcatattccactt
tatttctacttccaatggtatagactatcaccatagaccagtgtctctct
accttcctgatgaggtaactcattaatacagtttctcatattgtagtgac
gtccaaccacaaaattatatctgctgttactttcataactatacattttt
acttttgtgagtcataatgggaaatgttagataatagagtacaatctaac
atgcaacctccctaaaagaaatcatggaatccacagggttgaagacccac
caggcccgtagacttaaaattccttggaatgattgtgtcatttaaccagt
taacatagaatcttaacacgaaagtctggcatgtcaactttcattcaccc
tgtgttc
gaattctttgagagcatgattagttttaaaactgaagaaactcaacttcc
tgaaaatggtgaaatataaaggaaaagtcatacaggggaaactctactac
caaatattatttgctatcatgacttagtagatggctaaaaatgacacaat
gaaaagtttggaaacacgggttaatacatatgtcagagtcaacatagcaa
gtgacagagaaaacaaagaaatcattaaacacctgtgtctaataggataa
tttgccatatatagaaaacatgagatggaatactatctcgggtcagtatg
ttccattttggtgggataagatgatgtactttaaaatagtaaggaaatta
tgaatatgtctacccgtaacatcatgaatgacaacttcttcttcttcttt
tttttttttttttttggtttggttttggttttggttttttgtttttcgag
acagggtttctctctatagctttcctggaactcactctgtagaccaggct
ggtctcaaactcagaaatccatctgcctctgcctcccaaaaggcatgtgc
caccactgcctggcgaatgacaacttcttttaagtaacatatttaaaaaa
caaaaaacaaaaaacaaaaaaaaagaaagaaacaaacaaacaaataaaca
aaaaaagcacatttgatttgtatgtttattggctttactttacatctact
agaaaagctaaaaagaatattattattctagaaagttgcaaagcacactg
ccaaaaacattattttaaccctctaaataataaagaattgtttttatgga
taaaagaaaaaaacaaaacaccataaagaaagaaacacagataagcatag
actttgataaatcttaaaataataattggtagtgaaaatgtaaattaact
ggaactttttttttttttaccattttgtattctctagaataacagaattc
taaactttttcaaggatagccagggattaggaccagtgaaaaatcataac
atgttttgttagggaataaatgattcactaatttaaaatctgctgatgat
catggtgataaagttgtttcttacagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_29532144_29533327
seq2: B6Ng01-281C19.b_45_1251

seq1  GAATTCACAGCCCATACCTAAACATACTAAATACAATATACAGCAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCCCATACCTAAACATACTAAATACAATATACAGCAAACCA  50

seq1  GTAGCCAACATCAAACTAAATGGAGAGAATCTTGAAGCAATGCCACTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAACATCAAACTAAATGGAGAGAATCTTGAAGCAATGCCACTAAA  100

seq1  ATCAGGGACTAGACAAGACTGCTCTCTCTCTCCCTAACTATTCAAGATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGACTAGACAAGACTGCTCTCTCTCTCCCTAACTATTCAAGATAG  150

seq1  TGCTTGAAGTTCTTGCCAGAGCAGTTAGACATACTGCATTTTATAAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAAGTTCTTGCCAGAGCAGTTAGACATACTGCATTTTATAAAATA  200

seq1  TCAACCACAGAGTAGCTATCTCATTAACTCACTGTTGGTACTCATATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACAGAGTAGCTATCTCATTAACTCACTGTTGGTACTCATATCAA  250

seq1  ACTGGCTTGAACTGACAAACAACTGGACAACAAGGACCAACTTTCCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTGAACTGACAAACAACTGGACAACAAGGACCAACTTTCCTCAT  300

seq1  CACAGGGAATGAAATATGTTTATTGATTAATTGTTGTACAATAAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAATGAAATATGTTTATTGATTAATTGTTGTACAATAAATGAAA  350

seq1  TTATAATGAAAATTTATTAAAATGAATTTAATGTATTATACAAAGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGAAAATTTATTAAAATGAATTTAATGTATTATACAAAGGAAGA  400

seq1  AAGATAAAAGGGAACTTTTGAATGTTGATGGCAAATCAAGAGGTAAGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAGGGAACTTTTGAATGTTGATGGCAAATCAAGAGGTAAGAAC  450

seq1  AGTACACTGTGCTTATTAAATGGTTTAGCCTTTCTTGAAAATATTTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACTGTGCTTATTAAATGGTTTAGCCTTTCTTGAAAATATTTCAGT  500

seq1  GCAACAATCATGAAATTACTCCACATACAAAATTATCATTTACTGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAATCATGAAATTACTCCACATACAAAATTATCATTTACTGTAGAA  550

seq1  GGAAAGAACTTGTACAACATAATTACAAGACCCACATTAGTTTTGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAACTTGTACAACATAATTACAAGACCCACATTAGTTTTGTAATT  600

seq1  AATTTCTCAATATTATTTGCTATTTTAGTGTTGGAGAACTTTGTGACCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCAATATTATTTGCTATTTTAGTGTTGGAGAACTTTGTGACCAT  650

seq1  AATTCACCCTAATACTCAAAATAATAAAAGTTTTAAATATTCTTGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCCTAATACTCAAAATAATAAAAGTTTTAAATATTCTTGCATCT  700

seq1  TCTGAAAAATTACCTATTAGAAAATTCTGTTTCAGTCTATCTGTGTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAATTACCTATTAGAAAATTCTGTTTCAGTCTATCTGTGTGTCA  750

seq1  TAATGTCCATCAATTTGCACTTATATTTGTGTTAGGCAATCTTACCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTCCATCAATTTGCACTTATATTTGTGTTAGGCAATCTTACCTTTT  800

seq1  TATCTTAGGACCATGATCTATTCTGAAACATATCTCAGCATATTCCACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTAGGACCATGATCTATTCTGAAACATATCTCAGCATATTCCACTT  850

seq1  TATTTCTACTTCCAATGGTATAGACTATCACCATAGACCAGTGTCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTACTTCCAATGGTATAGACTATCACCATAGACCAGTGTCTCTCT  900

seq1  ACCTTCCTGATGAGGTAACTCATTAATACAGTTTCTCATATTGTAGTGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCTGATGAGGTAACTCATTAATACAGTTTCTCATATTGTAGTGAC  950

seq1  GTCCAACCACAAAATTATATCTGCTGTTAC-TTCATAACTATACATTTTT  999
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTCCAACCACAAAATTATATCTGCTGTTACTTTCATAACTATACATTTTT  1000

seq1  ACTTTTGTGAGTCATAAT-GGAAATGTTAGAT-ATAGAGTAC-ATCTAAC  1046
      |||||||||||||||||| ||||||||||||| ||||||||| |||||||
seq2  ACTTTTGTGAGTCATAATGGGAAATGTTAGATAATAGAGTACAATCTAAC  1050

seq1  ATGCAA-CTCC--TAAAGAAATCAT-GAAT-CACA-GGTTG-AGAACCA-  1088
      |||||| ||||   ||||||||||| |||| |||| ||||| ||| ||| 
seq2  ATGCAACCTCCCTAAAAGAAATCATGGAATCCACAGGGTTGAAGACCCAC  1100

seq1  CAG--CCGTAGACTTAAAAATCCTTGGAATGAT--TGTCA-TTAAACAGT  1133
      |||  |||||||||||||| |||||||||||||  ||||| |||| ||||
seq2  CAGGCCCGTAGACTTAAAATTCCTTGGAATGATTGTGTCATTTAACCAGT  1150

seq1  AAACATAG-ATCTTAAC-CAGAAGTCT-GCATGTCAAC-TTCA-TCA-CC  1177
       ||||||| |||||||| |  |||||| |||||||||| |||| ||| ||
seq2  TAACATAGAATCTTAACACGAAAGTCTGGCATGTCAACTTTCATTCACCC  1200

seq1  TGTGTTC  1184
      |||||||
seq2  TGTGTTC  1207

seq1: chr10_29635811_29636886
seq2: B6Ng01-281C19.g_66_1142 (reverse)

seq1  ACTGTAAGAAACAACTTTATCA-CATGATCATCAGCAGATTTTTAAATTA  49
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  ACTGTAAGAAACAACTTTATCACCATGATCATCAGCAGA-TTTTAAATTA  49

seq1  GTTGAATCCATTTTATCCCTAACAAAACATGTTATGATTTTTCACTGGTC  99
      | ||||| |||||  |||||||||||||||||||||||||||||||||||
seq2  G-TGAAT-CATTTATTCCCTAACAAAACATGTTATGATTTTTCACTGGTC  97

seq1  CTAATCCCTGGCTATCCTTGAAAAAGTTTAGAATTCTGTTATTCTAGAGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCTGGCTATCCTTGAAAAAGTTTAGAATTCTGTTATTCTAGAGA  147

seq1  ATACAAAATGGTAAAAAAAAAAAA--GTCCAGTTAATTTACATTTTCACT  197
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  ATACAAAATGGTAAAAAAAAAAAAAGTTCCAGTTAATTTACATTTTCACT  197

seq1  ACCAATTATTATTTTAAGATTTATCAAAGTCTATGCTTATCTGTGTTTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTATTATTTTAAGATTTATCAAAGTCTATGCTTATCTGTGTTTCT  247

seq1  TTCTTTATGGTGTTTTGTTTTTTTCTTTTATCCATAAAAACAATTCTTTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATGGTGTTTTGTTTTTTTCTTTTATCCATAAAAACAATTCTTTA  297

seq1  TTATTTAGAGGGTTAAAATAATGTTTTTGGCAGTGTGCTTTGCAACTTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGAGGGTTAAAATAATGTTTTTGGCAGTGTGCTTTGCAACTTTC  347

seq1  TAGAATAATAATATTCTTTTTAGCTTTTCTAGTAGATGTAAAGTAAAGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATAATAATATTCTTTTTAGCTTTTCTAGTAGATGTAAAGTAAAGCC  397

seq1  AATAAACATACAAATCAAATGTGCTTTTTTTGTTTATTTGTTTGTTTGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACATACAAATCAAATGTGCTTTTTTTGTTTATTTGTTTGTTTGTT  447

seq1  TCTTTCTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTAAATATGTTACTTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTTTTTTTGTTTTTTGTTTTTTGTTTTTTAAATATGTTACTTA  497

seq1  AAAGAAGTTGTCATTCGCCAGGCAGTGGTGGCACATGCCTTTTGGGAGGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGTTGTCATTCGCCAGGCAGTGGTGGCACATGCCTTTTGGGAGGC  547

seq1  AGAGGCAGATGGATTTCTGAGTTTGAGACCAGCCTGGTCTACAGAGTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGATGGATTTCTGAGTTTGAGACCAGCCTGGTCTACAGAGTGAG  597

seq1  TTCCAGGAAAGCTATAGAGAGAAACCCTGTCTCGAAAAACAAAAAACCAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAAGCTATAGAGAGAAACCCTGTCTCGAAAAACAAAAAACCAA  647

seq1  AACCAAAACCAAACCAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGTTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCAAACCAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGTTGT  697

seq1  CATTCATGATGTTACGGGTAGACATATTCATAATTTCCTTACTATTTTAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATGATGTTACGGGTAGACATATTCATAATTTCCTTACTATTTTAA  747

seq1  AGTACATCATCTTATCCCACCAAAATGGAACATACTGACCCGAGATAGTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCATCTTATCCCACCAAAATGGAACATACTGACCCGAGATAGTA  797

seq1  TTCCATCTCATGTTTTCTATATATGGCAAATTATCCTATTAGACACAGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTCATGTTTTCTATATATGGCAAATTATCCTATTAGACACAGGT  847

seq1  GTTTAATGATTTCTTTGTTTTCTCTGTCACTTGCTATGTTGACTCTGACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATGATTTCTTTGTTTTCTCTGTCACTTGCTATGTTGACTCTGACA  897

seq1  TATGTATTAACCCGTGTTTCCAAACTTTTCATTGTGTCATTTTTAGCCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTAACCCGTGTTTCCAAACTTTTCATTGTGTCATTTTTAGCCAT  947

seq1  CTACTAAGTCATGATAGCAAATAATATTTGGTAGTAGAGTTTCCCCTGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGTCATGATAGCAAATAATATTTGGTAGTAGAGTTTCCCCTGTA  997

seq1  TGACTTTTCCTTTATATTTCACCATTTTCAGGAA-TTGAGTTTCTTCAGT  1046
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGACTTTTCCTTTATATTTCACCATTTTCAGGAAGTTGAGTTTCTTCAGT  1047

seq1  TTTAAAACTAATCATGCTCTCAAAGAATTC  1076
      ||||||||||||||||||||||||||||||
seq2  TTTAAAACTAATCATGCTCTCAAAGAATTC  1077