BAC Information

Click to search

BAC

Clone NameB6Ng01-281F03
Chromosome10 (Build37)
Map Location 27,555,656 - 27,556,755
singlet/doubletsinglet
Overlap genenone
Upstream geneArhgap18, Lama2, LOC100040385
Downstream geneLOC100040961, LOC100040401, Ptprk, E430004N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281F03.bB6Ng01-281F03.g
ACCGA080830GA080831
length8261,099
definitionB6Ng01-281F03.b B6Ng01-281F03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttcatgttaacaaagaggaccttgcttaaaggaggaatgtaaag
taggtacattattatacaaacaatgcctagggctgctactgacactcttg
gaggcccaaatctgctgaccctgtcctaagggcaggaaaggatcaacaca
actctaaacagtatttccaattgaggaaactcagatgactgggaaccaac
acataaactccttagctgtcagggaaattcaaatcagaactactttgaga
tttcaccttacacgtgtcagaatagctgagataaataatataagtgacag
ctcatgtggataaggatatggaataaggggaaaacccttccatggttgct
atggaaatcagtgtggtgattcctcagaaagatgggaattgatttacctc
aggatccaattaccagaatccaaataccaggagtggtaactcctgggaac
gtacctgaaggcacttcatcctaccacagagacgcttgcccaaccatgtt
cactgctgctctactcacaatagccacaaactggaaacaacccaggtgtc
catcattggatgaatggataaagaaaatgtgatatgtttacacaatggag
tattacgtagctgttaaaataatgacatcatgaaatttgcagttacatgg
ggcaactagaaaaaaaaatcatgctgagtgaggtaacccagacccagaaa
gataaatacagtatgtattcccttataagctgatattatctgttaagtga
atgattatcaagctacctgtagacccagagagttttggtatagagaaagg
gactaggggcgggggttagggggtgg

gaattccttggtgatgaacagcagtatggaagtgtaagccgaataaaccc
tttcctccccaagtgcttcttggtcatgatgtttgtgcaggaatagaaac
cctgactaagacattcccgtaaattagttccttttctctttgaggcaaca
aagtgtctaagagcaacttaagtaagaaagagtttgtttctgtggtgatt
ttaaagcccaccaagttgactatcagattaaccattacagcatggagttg
ggctcactggtttctaggttcactgaaaggtggacattgtataactgctt
tctgtgtttgcctgtcatcaaagcttacacttgaaagtgagaaatgtcag
aagcagaagtcctgacctaatgttctacagaagttatccctcaggaaatg
agaagtctgagcatttccaaatgattccacacacctcaaaagggagaagt
gacattttcagtctctgcttctcaatcagaaataacgtcttcccaattta
aggatcaaaaacagtcaccattcagagacataataaaggtcagcaataca
tgacgtaaaactaaagtctgtaaagaatcactactgggaaaggataacaa
acactatcctctcagccttcaaacacactaattaaaatcatatcttttaa
aagaagaaagtgctaagtcagatgctccacaaaataacagcctagtttca
ctgaaattcaatttcatacagccaagaggtttttaaatgtcactcaaacc
cccacataaatgacatcaatagtgatgtaaaaagagatgttttaatggtt
gtaagattcacattctaactcccaggcttcagtaatgaaaggtttgaact
cctatgtctattttaaagaaaagctgggggtccaccactccactaatttt
agatagaaccatatttatttttaaacctaaaatatgggccctatgcccta
tgcaatttaagttctgatcgcttgctttagatctttatgcacttactttc
agagtcataaaaataagaaaatgccataattggactttttcataattgtt
ttattcttgattggaaatctgctggtgtcaacctcaactttcctagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27555656_27556755
seq2: B6Ng01-281F03.g_65_1163

seq1  GAATTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCGAATAAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGTGATGAACAGCAGTATGGAAGTGTAAGCCGAATAAACCC  50

seq1  TTTCCTCCCCAAGTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCCCAAGTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAAAC  100

seq1  CCTGACTAAGACATTCCCGTAAATTAGTTCCTTTTCTCTTTGAGGCAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTAAGACATTCCCGTAAATTAGTTCCTTTTCTCTTTGAGGCAACA  150

seq1  AAGTGTCTAAGAGCAACTTAAGTAAGAAAGAGTTTGTTTCTGTGGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTCTAAGAGCAACTTAAGTAAGAAAGAGTTTGTTTCTGTGGTGATT  200

seq1  TTAAAGCCCACCAAGTTGACTATCAGATTAACCATTACAGCATGGAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCCACCAAGTTGACTATCAGATTAACCATTACAGCATGGAGTTG  250

seq1  GGCTCACTGGTTTCTAGGTTCACTGAAAGGTGGACATTGTATAACTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGGTTTCTAGGTTCACTGAAAGGTGGACATTGTATAACTGCTT  300

seq1  TCTGTGTTTGCCTGTCATCAAAGCTTACACTTGAAAGTGAGAAATGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTGCCTGTCATCAAAGCTTACACTTGAAAGTGAGAAATGTCAG  350

seq1  AAGCAGAAGTCCTGACCTAATGTTCTACAGAAGTTATCCCTCAGGAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGTCCTGACCTAATGTTCTACAGAAGTTATCCCTCAGGAAATG  400

seq1  AGAAGTCTGAGCATTTCCAAATGATTCCACACACCTCAAAAGGGAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCTGAGCATTTCCAAATGATTCCACACACCTCAAAAGGGAGAAGT  450

seq1  GACATTTTCAGTCTCTGCTTCTCAATCAGAAATAACGTCTTCCCAATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTCAGTCTCTGCTTCTCAATCAGAAATAACGTCTTCCCAATTTA  500

seq1  AGGATCAAAAACAGTCACCATTCAGAGACATAATAAAGGTCAGCAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAAAAACAGTCACCATTCAGAGACATAATAAAGGTCAGCAATACA  550

seq1  TGACGTAAAACTAAAGTCTGTAAAGAATCACTACTGGGAAAGGATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAAAACTAAAGTCTGTAAAGAATCACTACTGGGAAAGGATAACAA  600

seq1  ACACTATCCTCTCAGCCTTCAAACACACTAATTAAAATCATATCTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATCCTCTCAGCCTTCAAACACACTAATTAAAATCATATCTTTTAA  650

seq1  AAGAAGAAAGTGCTAAGTCAGATGCTCCACAAAATAACAGCCTAGTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGTGCTAAGTCAGATGCTCCACAAAATAACAGCCTAGTTTCA  700

seq1  CTGAAATTCAATTTCATACAGCCAAGAGGTTTTTAAATGTCACTCAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCAATTTCATACAGCCAAGAGGTTTTTAAATGTCACTCAAACC  750

seq1  CCCACATAAATGACATCAATAGTGATGTAAAAAGAGATGTTTTAATGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATAAATGACATCAATAGTGATGTAAAAAGAGATGTTTTAATGGTT  800

seq1  GTAAGATTCACATTCTAACTCCCAGGCTTCAGTAATG-AAGGTTTGAACT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTAAGATTCACATTCTAACTCCCAGGCTTCAGTAATGAAAGGTTTGAACT  850

seq1  CCTATGTCTATTTTAAAGAAAAGCTGGGGGTCCACCACTCCACTAAATTT  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTATGTCTATTTTAAAGAAAAGCTGGGGGTCCACCACTCCACT-AATTT  899

seq1  TAGATAGAACCATATTTATTTTTAAACCTAAAATAT-GGCCCTATGCCCT  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAGATAGAACCATATTTATTTTTAAACCTAAAATATGGGCCCTATGCCCT  949

seq1  ATGCAATTTAAGTTTCTGATCGCTTGCTTTAGATCTTTATGCACTTACTT  998
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTTAAG-TTCTGATCGCTTGCTTTAGATCTTTATGCACTTACTT  998

seq1  TCAGAAGTCATAAAAATAAGAAAATTGCCATAATTGGGACTTTTTCCATA  1048
      |||| ||||||||||||||||||| |||||||||| ||||||||| ||||
seq2  TCAG-AGTCATAAAAATAAGAAAA-TGCCATAATT-GGACTTTTT-CATA  1044

seq1  ATTGTTTTA-TCTTGGTTGAAAATCTGCTGGTGTCAAACTCA--CTTCCT  1095
      ||||||||| ||||| ||| ||||||||||||||||| ||||   |||||
seq2  ATTGTTTTATTCTTGATTGGAAATCTGCTGGTGTCAACCTCAACTTTCCT  1094

seq1  AGCCA  1100
      |||||
seq2  AGCCA  1099


| Home | SequenceCutter | Blast | Download |