BAC Information

Click to search

BAC

Clone NameB6Ng01-281J14
Chromosome10 (Build37)
Map Location 89,839,490 - 89,976,975
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281J14.bB6Ng01-281J14.g
ACCGA081036GA081037
length1,1511,005
definitionB6Ng01-281J14.b B6Ng01-281J14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,839,490 - 89,840,638)(89,975,983 - 89,976,975)
sequence
gaattccatctgctgagcagcagctttcaaaggttggagtgaactgtgac
agagatgtatggtcaagctgtccatggtcctgatttagatcagctaatgg
gttacgaggaaagcacctaggcttcaaagaatcacacctattccagagcc
aaggatgtagtttctgcattatacactcttcttggatatcaatcaggact
attgttggtcttcatttcctctattagcagatatatctatggtctctttt
ataagtccacataatcaggagttgactatacagagctaacaatagattgc
agattctcttctgggaagcacataggcgcacacaaagggagcattattag
ccaaacgaatatctccatccctggtgattagcattttgagaggctgttgt
cttagagcaaatatttagatcatatatcgcgtaacttctatgtagctttg
tgtttcttctaatcttagtactaagtaaatagtacttgtttaaatttgaa
gggaatttctactctattttagttatcttagcatcagataggacagttcc
tagtccagtgatgtggtgtagaccatcaatttgcagctgtgctttatttc
tgctattagctatacttttctagaaagggcaacattataataaatgtgtc
aagttctataagtagtttgctatttactaataacacatttgctcccagaa
attgctaataggaaagattaatacaaggatatcaaacacaaagggaacct
gaattgttcttttattccccacacgcttgatatattacctttgcagcagc
aattattctgtaaactttaaaattcatttaatctatttacctaaaattgg
ctctctgttattaaataagaactgatgttctattttagcaacctgaagca
tgaattactgtggttggagccttaattattggttggttatgaatgtgtag
ccgttgcttttctcattgctcagacaagacatcggaccaagggactgagg
atgggcttacttcaattttaagttatttttatgtcacgtgtatgtgtgtt
ggctgcatgtaatgtgtgctcatcacattgcattttctgagcccagaggt
aggtcaccaggatctggacacagtcaatctgtaaagaagtaatgctttgt
t
gaattcacatatttttgttttcaccattcctgtttaacatggagatggtc
attatgctgtaaacctcgctgtaggagcttgagacacatctagtatcaag
gtttaaagtaatatgcatgccttggtacctgctaccaatctctagggaga
ttgctctagatatggactgatctgatatagaacggagtatcagatatagg
atggggaagaattatgggagagaaagtttgtggctgggcagttaactgtc
ccactctcatctttccacacatgtaaccaggctgcaaaatcatgctgtct
taccggttcttctgtaccaccgctgagggacaacctggcttgccttggaa
gagcaatagcaccaccagagttctcaatgtttactcaacactgcagcctg
gacagctgaagagcatctggctggccactgcctaaggatctgacagttcc
ctgatgaggcacatgctgttgttagccattctaggaattacagtatggga
ctttaagctaccctactgaggtggtaagcttgtcttcatttaaattttga
tagtgtgtttagcattgatttggcatagtaattttgaaaatttaaacaat
tccattaaaatactttgtgtttagatgactacagtacccgctaagatctt
gcttgttaggcaagtaccttattcaccttatcctaggctgtgctctgatg
agggagtcttaattaatttcttttagtatgaatatagtgatttctaaagg
catagctaaatttggtatttgacatcatctatcagagttaagcaaaaagt
cagtaaaatgggttctagtggctttctactctgagcttgaaattatagag
gaaactcttataggcatatattaaatcattgatggtaaaagatattcttc
caggagatacttctactcggtactacaggaatcatgaagagggagtaaca
tatcaggtctgcccaatggtattttaaaactcccagtctgtttaattacc
tttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_89839490_89840638
seq2: B6Ng01-281J14.b_48_1198

seq1  GAATTCCATCTGCTGAGCAGCAGCTTTCAAAGGTTGGAGTGAACTGTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGCTGAGCAGCAGCTTTCAAAGGTTGGAGTGAACTGTGAC  50

seq1  AGAGATGTATGGTCAAGCTGTCCATGGTCCTGATTTAGATCAGCTAATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTATGGTCAAGCTGTCCATGGTCCTGATTTAGATCAGCTAATGG  100

seq1  GTTACGAGGAAAGCACCTAGGCTTCAAAGAATCACACCTATTCCAGAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACGAGGAAAGCACCTAGGCTTCAAAGAATCACACCTATTCCAGAGCC  150

seq1  AAGGATGTAGTTTCTGCATTATACACTCTTCTTGGATATCAATCAGGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTAGTTTCTGCATTATACACTCTTCTTGGATATCAATCAGGACT  200

seq1  ATTGTTGGTCTTCATTTCCTCTATTAGCAGATATATCTATGGTCTCTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGTCTTCATTTCCTCTATTAGCAGATATATCTATGGTCTCTTTT  250

seq1  ATAAGTCCACATAATCAGGAGTTGACTATACAGAGCTAACAATAGATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTCCACATAATCAGGAGTTGACTATACAGAGCTAACAATAGATTGC  300

seq1  AGATTCTCTTCTGGGAAGCACATAGGCGCACACAAAGGGAGCATTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCTTCTGGGAAGCACATAGGCGCACACAAAGGGAGCATTATTAG  350

seq1  CCAAACGAATATCTCCATCCCTGGTGATTAGCATTTTGAGAGGCTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACGAATATCTCCATCCCTGGTGATTAGCATTTTGAGAGGCTGTTGT  400

seq1  CTTAGAGCAAATATTTAGATCATATATCGCGTAACTTCTATGTAGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCAAATATTTAGATCATATATCGCGTAACTTCTATGTAGCTTTG  450

seq1  TGTTTCTTCTAATCTTAGTACTAAGTAAATAGTACTTGTTTAAATTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTAATCTTAGTACTAAGTAAATAGTACTTGTTTAAATTTGAA  500

seq1  GGGAATTTCTACTCTATTTTAGTTATCTTAGCATCAGATAGGACAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTTCTACTCTATTTTAGTTATCTTAGCATCAGATAGGACAGTTCC  550

seq1  TAGTCCAGTGATGTGGTGTAGACCATCAATTTGCAGCTGTGCTTTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAGTGATGTGGTGTAGACCATCAATTTGCAGCTGTGCTTTATTTC  600

seq1  TGCTATTAGCTATACTTTTCTAGAAAGGGCAACATTATAATAAATGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTAGCTATACTTTTCTAGAAAGGGCAACATTATAATAAATGTGTC  650

seq1  AAGTTCTATAAGTAGTTTGCTATTTACTAATAACACATTTGCTCCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTATAAGTAGTTTGCTATTTACTAATAACACATTTGCTCCCAGAA  700

seq1  ATTGCTAATAGGAAAGATTAATACAAGGATATCAAACACAAAGGGAACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTAATAGGAAAGATTAATACAAGGATATCAAACACAAAGGGAACCT  750

seq1  GAATTGTTCTTTTATTCCCCACACGCTTGATATATTACCTTTGCAGCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTCTTTTATTCCCCACACGCTTGATATATTACCTTTGCAGCAGC  800

seq1  AATTATTCTGTAAACTTTAAAATTCATTTAATCTATTTACCTAAAATTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTGTAAACTTTAAAATTCATTTAATCTATTTACCTAAAATTGG  850

seq1  CTCTCTGTTATTAAATAAGAACTGATGTTCTATTTTAGCAACCTGAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTTATTAAATAAGAACTGATGTTCTATTTTAGCAACCTGAAGCA  900

seq1  TGAATTACTGTGGTTGGAGCCTTAATTATTGGTTGGTTATGAATGTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTACTGTGGTTGGAGCCTTAATTATTGGTTGGTTATGAATGTGTAG  950

seq1  CCGTTGCTTTTCTCATTGCTCAGACAAGACATCGGACCAAGGGACTTGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCGTTGCTTTTCTCATTGCTCAGACAAGACATCGGACCAAGGGAC-TGAG  999

seq1  GATGGGCTTACTTCAATTTTAAGTTTATTTTTATGTCACGTGTATGTGTG  1050
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATGGGCTTACTTCAATTTTAAG-TTATTTTTATGTCACGTGTATGTGTG  1048

seq1  TTTGCCTGCATGT-ATGTGTGCTCATCACA-TGCA-TTTCTGAGGCCCAG  1097
       ||| |||||||| |||||||||||||||| |||| ||||||| ||||||
seq2  -TTGGCTGCATGTAATGTGTGCTCATCACATTGCATTTTCTGA-GCCCAG  1096

seq1  A-GTAGGTCACCAGATCCTGAACACAGGTCATCTG-AAAG-AGTAATGCT  1144
      | ||||||||||||   ||| ||||||   ||||| |||| |||||||||
seq2  AGGTAGGTCACCAGGATCTGGACACAGTCAATCTGTAAAGAAGTAATGCT  1146

seq1  TTGTT  1149
      |||||
seq2  TTGTT  1151

seq1: chr10_89975983_89976975
seq2: B6Ng01-281J14.g_66_1070 (reverse)

seq1  CGAAA-GTAATT-AACAGCTTGTGAGTTTT-AAATACCATTTGGCAAAAC  47
      ||||| |||||| |||||  || ||||||| |||||||||| |||| | |
seq2  CGAAAGGTAATTAAACAGACTGGGAGTTTTAAAATACCATTGGGCAGACC  50

seq1  T-ATATGTTACT-CCTCTTCTTTGATCCTGTAGTGCCGAGTAG-AGTATC  94
      | |||||||||| ||||||| |   ||||||||| |||||||| ||||||
seq2  TGATATGTTACTCCCTCTTCATGATTCCTGTAGTACCGAGTAGAAGTATC  100

seq1  T-CTTGAAGAATTTCTTTTACCATC-ATGATTTAATATATGCCTATAAGA  142
      | || ||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TCCTGGAAGAATATCTTTTACCATCAATGATTTAATATATGCCTATAAGA  150

seq1  GTTTCTTCTATAATTTC-AGCTCAGAGTAGAAAGCCACTTGGAACCATTT  191
      ||||| ||||||||||| ||||||||||||||||||||| | | ||||||
seq2  GTTTCCTCTATAATTTCAAGCTCAGAGTAGAAAGCCACTAGAACCCATTT  200

seq1  TACTGACTTTTTGCTTAACTCTGATAGATGATGTCAAATACCAAA-TTAG  240
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TACTGACTTTTTGCTTAACTCTGATAGATGATGTCAAATACCAAATTTAG  250

seq1  CTATGCCTTTAGAAATCACTATATTCATACT-AAAGAAATTAATT-AGAC  288
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CTATGCCTTTAGAAATCACTATATTCATACTAAAAGAAATTAATTAAGAC  300

seq1  TCCCTCATCAGAGCACAGCCTAGGATAAGGTGAATAAGGTACTTGCCTAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCATCAGAGCACAGCCTAGGATAAGGTGAATAAGGTACTTGCCTAA  350

seq1  CAAGCAAGATCTTAGCGGGTACTGTAGTCATCTAAACACAAAGTATTTTA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAGATCTTAGCGGGTACTGTAGTCATCTAAACACAAAGTATTTTA  400

seq1  ATGGAATTGTTTAAATTTTCAAAATTACTATGCCAAATCAATGCTAAACA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTGTTTAAATTTTCAAAATTACTATGCCAAATCAATGCTAAACA  450

seq1  CACTATCAAAATTTAAATGAAGACAAGCTTACCACCTCAGTAGGGTAGCT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCAAAATTTAAATGAAGACAAGCTTACCACCTCAGTAGGGTAGCT  500

seq1  TAAAGTCCCATACTGTAATTCCTAGAATGGCTAACAACAGCATGTGCCTC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCCATACTGTAATTCCTAGAATGGCTAACAACAGCATGTGCCTC  550

seq1  ATCAGGGAACTGTCAGATCCTTAGGCAGTGGCCAGCCAGATGCTCTTCAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAACTGTCAGATCCTTAGGCAGTGGCCAGCCAGATGCTCTTCAG  600

seq1  CTGTCCAGGCTGCAGTGTTGAGTAAACATTGAGAACTCTGGTGGTGCTAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAGGCTGCAGTGTTGAGTAAACATTGAGAACTCTGGTGGTGCTAT  650

seq1  TGCTCTTCCAAGGCAAGCCAGGTTGTCCCTCAGCGGTGGTACAGAAGAAC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTCCAAGGCAAGCCAGGTTGTCCCTCAGCGGTGGTACAGAAGAAC  700

seq1  CGGTAAGACAGCATGATTTTGCAGCCTGGTTACATGTGTGGAAAGATGAG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAGACAGCATGATTTTGCAGCCTGGTTACATGTGTGGAAAGATGAG  750

seq1  AGTGGGACAGTTAACTGCCCAGCCACAAACTTTCTCTCCCATAATTCTTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGACAGTTAACTGCCCAGCCACAAACTTTCTCTCCCATAATTCTTC  800

seq1  CCCATCCTATATCTGATACTCCGTTCTATATCAGATCAGTCCATATCTAG  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTATATCTGATACTCCGTTCTATATCAGATCAGTCCATATCTAG  850

seq1  AGCAATCTCCCTAGAGATTGGTAGCAGGTACCAAGGCATGCATATTACTT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTCCCTAGAGATTGGTAGCAGGTACCAAGGCATGCATATTACTT  900

seq1  TAAACCTTGATACTAGATGTGTCTCAAGCTCCTACAGCGAGGTTTACAGC  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTTGATACTAGATGTGTCTCAAGCTCCTACAGCGAGGTTTACAGC  950

seq1  ATAATGACCATCTCCATGTTAAACAGGAATGGTGAAAACAAAAATATGTG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACCATCTCCATGTTAAACAGGAATGGTGAAAACAAAAATATGTG  1000

seq1  AATTC  993
      |||||
seq2  AATTC  1005