BAC Information

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BAC

Clone NameB6Ng01-281L10
Chromosome10 (Build37)
Map Location 33,301,143 - 33,302,253
singlet/doubletsinglet
Overlap geneA330019N05Rik
Upstream geneTcba1, EG667761, Trdn
Downstream geneLOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik, BB146404, A630077B13Rik, Dse, Tspyl1, Tspyl4, Nt5dc1, Col10a1, Frk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281L10.bB6Ng01-281L10.g
ACCGA081121GA081122
length1,2071,117
definitionB6Ng01-281L10.b B6Ng01-281L10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagaacacagcaaaacaatcatccattacgatcaaataggcttc
attctagggatgcagggatggtttaatatacagaaatctgtaaacataat
ccactatataaacaaactcaaagacaaaaaccataggatcatctcattag
atgctgagaaagaatttgacaaaatccaacatcttttcatgataaaagtc
ttgaaagatcaggaattcaaggcccagacctaaacataataaaagcagta
aacagcaagccagtagccaacatcaaactaaatggagagaaacttgaagc
aatcccactaaaatcagggacatcccactctctccctacctattcaatat
agtacttgaagtcctagccagagcaattagacaacaaaaggagatcaaag
gaataaaaattggaaaggaaaaagtcaaaatatccctatttgcaggtgat
ttgatagtatatataagcgacccccaaattctaccagagaactcctaaac
cttataaacaactacagtgaagtagccagatataaaattaactctacaca
aaggataaacaggctgagaaagaaattaggaaaacaacacccttcaaaat
agtcagaaataatataaaataccttggtgtaattccatctaaggaagtga
aaggtctctatgatatttagatcttcaagtctttgaagaaagaaattgaa
accaatctcagaagatggaaagttctcccatgctcatggactggcaaggt
taatatagtaaaactggctatcttgctgagatcaatctacagattcaatg
caattcccacaaaaattccaactcaattcttcacagagttagggcaattt
gcaaatacatctggaataacaaaatatctaggatagcaaaaactattctc
aacaataaaagaacctctggtggtatcaccatgcctgacctcaagctgta
ttacagagcaattgtcataaaaaattgcatggtacagtgacaggtagatt
aatggaatagaggacccagtatggtcccacaccacctatgggtcactttg
atctttgacaagtgctaaactatccagtggaaaaaagacagcattttcac
aattggtgctgctcacctagcagtaccatgtacaaatgcgattgaatgga
tccttatctcttgtaacaaggctcaagtcttagagggtgtggaatctcaa
gagggac
gaattcactgtctttcccttgttaattttgttttgttgaatatttcaaat
gaaacctttttgccttctcatgtatatttttctgtttataaatgtgtatt
tttgaaaaaaaatgttttgtgtgtgcatgtgaaggaagtacacatgagtg
tttgctatgtggaggccagagttcaacagcatacctttttaaattggttt
ccacttcattgtgtgggttagcatgtgtgcatgcatgagtatgtgtgttg
gtatacatgcacacatctgcacgtgacaacggagatcatcaaatgtccct
tataactgtcttctttaattttttccaaggatctctcattgaacatagaa
tgcgttgttttctcagataagctgttggccagcaagcacaagagggtttc
ttgtctctactctctcttaactctttgccccacagcactaagttataggt
atgtataaacatgcctcactttttccatgtgtgctaaaggtcctcagttc
tgaacagtgagttcttttacacactgagccacaactctggcccatccaac
ttattttttaagacaaggtctcttactgaatttggagctcagtgattgct
cagaaagcctcaggatcctactttctccacatcttaagctctgactttcc
aggcattacaccttcatttttacatgggctctgaggatccacactcaggt
catatatggtgaaggtaaacttccccttgtccctcttaagagaggctgta
tgtttactaaacttatctgtgtgctgataaaggatttcatttacccacat
tactgcttcttgcaagtgaaaatgatattctcagctttagagtgtgagtt
caatctgctcagatttatttatcaagagtctttaatatgcctcttaaaat
tttgagaataagtatatttcatatttcaccctgtaaggaaatatacccta
aaatctcatgctatcagaaaaacatcaacttcttcatccttatcatcact
ttcatctaatgttatgagtcagaaaaagatcatcacctatttgactttcc
ttacagctccaatttgtcacactgccaggaatagatgttatatggaatgg
taaggtactgaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33301143_33302253
seq2: B6Ng01-281L10.g_65_1181

seq1  GAATTCACTGTCTTTCCCTTGTTAATTTTGTTTTGTTGAATATTTCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTTTCCCTTGTTAATTTTGTTTTGTTGAATATTTCAAAT  50

seq1  GAAACCTTTTTGCCTTCTCATGTATATTTTTCTGTTTATAAATGTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTTTTGCCTTCTCATGTATATTTTTCTGTTTATAAATGTGTATT  100

seq1  TTTGAAAAAAAATGTTTTGTGTGTGCATGTGAAGGAAGTACACATGAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAAAAAATGTTTTGTGTGTGCATGTGAAGGAAGTACACATGAGTG  150

seq1  TTTGCTATGTGGAGGCCAGAGTTCAACAGCATACCTTTTTAAATTGGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATGTGGAGGCCAGAGTTCAACAGCATACCTTTTTAAATTGGTTT  200

seq1  CCACTTCATTGTGTGGGTTAGCATGTGTGCATGCATGAGTATGTGTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCATTGTGTGGGTTAGCATGTGTGCATGCATGAGTATGTGTGTTG  250

seq1  GTATACATGCACACATCTGCACGTGACAACGGAGATCATCAAATGTCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACATGCACACATCTGCACGTGACAACGGAGATCATCAAATGTCCCT  300

seq1  TATAACTGTCTTCTTTAATTTTTTCCAAGGATCTCTCATTGAACATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGTCTTCTTTAATTTTTTCCAAGGATCTCTCATTGAACATAGAA  350

seq1  TGCGTTGTTTTCTCAGATAAGCTGTTGGCCAGCAAGCACAAGAGGGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTGTTTTCTCAGATAAGCTGTTGGCCAGCAAGCACAAGAGGGTTTC  400

seq1  TTGTCTCTACTCTCTCTTAACTCTTTGCCCCACAGCACTAAGTTATAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTACTCTCTCTTAACTCTTTGCCCCACAGCACTAAGTTATAGGT  450

seq1  ATGTATAAACATGCCTCACTTTTTCCATGTGTGCTAAAGGTCCTCAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAACATGCCTCACTTTTTCCATGTGTGCTAAAGGTCCTCAGTTC  500

seq1  TGAACAGTGAGTTCTTTTACACACTGAGCCACAACTCTGGCCCATCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTGAGTTCTTTTACACACTGAGCCACAACTCTGGCCCATCCAAC  550

seq1  TTATTTTTTAAGACAAGGTCTCTTACTGAATTTGGAGCTCAGTGATTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTAAGACAAGGTCTCTTACTGAATTTGGAGCTCAGTGATTGCT  600

seq1  CAGAAAGCCTCAGGATCCTACTTTCTCCACATCTTAAGCTCTGACTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGCCTCAGGATCCTACTTTCTCCACATCTTAAGCTCTGACTTTCC  650

seq1  AGGCATTACACCTTCATTTTTACATGGGCTCTGAGGATCCACACTCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTACACCTTCATTTTTACATGGGCTCTGAGGATCCACACTCAGGT  700

seq1  CATATATGGTGAAGGTAAACTTCCCCTTGTCCCTCTTAAGAGAGGCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGGTGAAGGTAAACTTCCCCTTGTCCCTCTTAAGAGAGGCTGTA  750

seq1  TGTTTACTAAACTTATCTGTGTGCTGATAAAGGATTTCATTTACCCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACTAAACTTATCTGTGTGCTGATAAAGGATTTCATTTACCCACAT  800

seq1  TACTGCTTCTTGCAAGTGAAAATGATATTCTCAGCTTTAGAGTGTGAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTCTTGCAAGTGAAAATGATATTCTCAGCTTTAGAGTGTGAGTT  850

seq1  CAATCTGCTCAGATTTATTTATCAAGAGTCTTTAATATGCCTCTTAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCTCAGATTTATTTATCAAGAGTCTTTAATATGCCTCTTAAAAT  900

seq1  TTTGAGAATAAGTATATTTCATATTTCACCCTGTAAGGAAATATACCCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATAAGTATATTTCATATTTCACCCTGTAAGGAAATATACCCTA  950

seq1  AAATCTCATGCTTATCAG-AAAACATCAACTTCTTCATCCTTATCATCAC  999
      ||||||||||| |||||| |||||||||||||||||||||||||||||||
seq2  AAATCTCATGC-TATCAGAAAAACATCAACTTCTTCATCCTTATCATCAC  999

seq1  TTTCATCTTAATGTTATGAGTCAGAAAAAGAATCATCACCTATTTGACTT  1049
      ||||||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCATC-TAATGTTATGAGTCAGAAAAAG-ATCATCACCTATTTGACTT  1047

seq1  TCCTTACAGCTCC-ATTTGTCACACTGCAAG--ATAGATG-TATATG--A  1093
      ||||||||||||| |||||||||||||| ||  ||||||| ||||||  |
seq2  TCCTTACAGCTCCAATTTGTCACACTGCCAGGAATAGATGTTATATGGAA  1097

seq1  TGTTA--GTACTGAAAGAGA  1111
      || ||  |||||||||||||
seq2  TGGTAAGGTACTGAAAGAGA  1117