BAC Information

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BAC

Clone NameB6Ng01-281O17
Chromosome10 (Build37)9 (Build37)
Map Location 73,803,758 - 73,803,79558,782,633 - 58,783,707
singlet/doubletsingletsinglet
Overlap genePcdh15
Upstream geneLOC432471, LOC100039981, LOC623191
Downstream geneEG630453, EG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281O17.bB6Ng01-281O17.g
ACCGA081272GA081273
length2871,080
definitionB6Ng01-281O17.b B6Ng01-281O17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(73,803,758 - 73,803,795)(58,782,633 - 58,783,707)
sequence
cctaggtcagattggcctgtggccatgtctgggggggaaacggtcttgat
tgttgattgatgtgagagggctcagaccactgtgggtggtgtcatccccc
tgggaggtagacctggactgtataagaacacaggctgagcccaagccaga
aagagcaactcagtaagtatcctctattgctcctgcctccccttggtgat
cgacaatgagatggcactgtaggaagaaacaaacccttcctctccaagtt
atgtatgtatgtatgtatgtgtgtgtgtgtgtgtgtg

gaattcattctcctccagtcttttggataccatgttgcatttatgttcta
tctgtctctttcaatttgacatttctgtagacttctgatctatcctatct
tcaacacttccaaagttttggtcaaagtatatgttctctcattatcttat
ggttatgcggatgagatttttctttccttaagtacaaatggtaagtgacc
ctgtagtgcttctgcatcagatgtttgtcaggatgccttgctgtttggtc
atgttaaccttgatggcgtgtgtgacttaggtggtatcctccgttctatc
tcctttctgatctcctctgattacttgagtataaatgttgcagaggattt
tgaagtctcagagctccttcatcttatacatgtcatccctgcttccaaat
gtactgacagttgatcaattgatttttgtcttttcagtctgcccctttgt
agtacctaggatgccagaatttcttctattaaatttactttatcttatct
gccttatttcttagtacactttgatttacttaaaatgcttttttgtttaa
tacaaaatggaatttatgatgtcctggttattattggaatacttctcaag
tcaggtatggtggtgcatgtttttaatcctagcactcaggaggcagaggc
aggaagatttctgtgagttcaagaccagcttgatctacagagagagttct
ggaacagccagggatacacagagaaaccctgactagaaagaccaaaagca
aacaaactaactaaaatcaaacaaacaaacaaacaaacaaagaaaccatc
tgtgcaaggaataataaaagtgactctatgcttgggaatattcaaattcg
tttttatacagatgtagtagcctcttcaagccatatgttgtacaaaagtt
tgtgaagcaacatgtttggcatcattccatttctttctttacgtgtgtaa
atataaagacatctgtgtgagtcagcttcttttattgctgtgataggagt
attctgggggaactgcctagaggagaaagcttgtctttgctcatgccttt
atggaggttttgttcatggttgggtagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_73803758_73803795
seq2: B6Ng01-281O17.b_303_340 (reverse)

seq1  CACACACACACACACACACATACATACATACATACATA  38
      ||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACATACATACATACATA  38


seq1: chr9_58782633_58783707
seq2: B6Ng01-281O17.g_71_1150 (reverse)

seq1  GAGCTACACAACCATGGACAAAACCTCCATAA--GCATGAGCAAAGACAA  48
      ||||||| |||||||| |||||||||||||||  ||||||||||||||||
seq2  GAGCTACCCAACCATGAACAAAACCTCCATAAAGGCATGAGCAAAGACAA  50

seq1  GCTTTCTTCCTCTAGGCAGTTTCCCCAG-ATACT-CTATCACAGCAATAG  96
      |||||| |||||||||||||| |||||| ||||| |||||||||||||| 
seq2  GCTTTC-TCCTCTAGGCAGTTCCCCCAGAATACTCCTATCACAGCAATAA  99

seq1  A--GAGCTGACTCACACAGATGTCTTTATATTTACACACGTAAAGAAAGA  144
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGACTCACACAGATGTCTTTATATTTACACACGTAAAGAAAGA  149

seq1  AATGGAATGATGCCAAACATGTTGCTTCACAAACTTTTGTACAACATATG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATGATGCCAAACATGTTGCTTCACAAACTTTTGTACAACATATG  199

seq1  GCTTGAAGAGGCTACTACATCTGTATAAAAACGAATTTGAATATTCCCAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGAGGCTACTACATCTGTATAAAAACGAATTTGAATATTCCCAA  249

seq1  GCATAGAGTCACTTTTATTATTCCTTGCACAGATGGTTTCTTTGTTTGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAGTCACTTTTATTATTCCTTGCACAGATGGTTTCTTTGTTTGTT  299

seq1  TGTTTGTTTGTTTGATTTTAGTTAGTTTGTTTGCTTTTGGTCTTTCTAGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGATTTTAGTTAGTTTGTTTGCTTTTGGTCTTTCTAGT  349

seq1  CAGGGTTTCTCTGTGTATCCCTGGCTGTTCCAGAACTCTCTCTGTAGATC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCTGTGTATCCCTGGCTGTTCCAGAACTCTCTCTGTAGATC  399

seq1  AAGCTGGTCTTGAACTCACAGAAATCTTCCTGCCTCTGCCTCCTGAGTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGTCTTGAACTCACAGAAATCTTCCTGCCTCTGCCTCCTGAGTGC  449

seq1  TAGGATTAAAAACATGCACCACCATACCTGACTTGAGAAGTATTCCAATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATTAAAAACATGCACCACCATACCTGACTTGAGAAGTATTCCAATA  499

seq1  ATAACCAGGACATCATAAATTCCATTTTGTATTAAACAAAAAAGCATTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGGACATCATAAATTCCATTTTGTATTAAACAAAAAAGCATTTT  549

seq1  AAGTAAATCAAAGTGTACTAAGAAATAAGGCAGATAAGATAAAGTAAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATCAAAGTGTACTAAGAAATAAGGCAGATAAGATAAAGTAAATT  599

seq1  TAATAGAAGAAATTCTGGCATCCTAGGTACTACAAAGGGGCAGACTGAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAGAAATTCTGGCATCCTAGGTACTACAAAGGGGCAGACTGAAA  649

seq1  AGACAAAAATCAATTGATCAACTGTCAGTACATTTGGAAGCAGGGATGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAATCAATTGATCAACTGTCAGTACATTTGGAAGCAGGGATGAC  699

seq1  ATGTATAAGATGAAGGAGCTCTGAGACTTCAAAATCCTCTGCAACATTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAGATGAAGGAGCTCTGAGACTTCAAAATCCTCTGCAACATTTA  749

seq1  TACTCAAGTAATCAGAGGAGATCAGAAAGGAGATAGAACGGAGGATACCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAGTAATCAGAGGAGATCAGAAAGGAGATAGAACGGAGGATACCA  799

seq1  CCTAAGTCACACACGCCATCAAGGTTAACATGACCAAACAGCAAGGCATC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTCACACACGCCATCAAGGTTAACATGACCAAACAGCAAGGCATC  849

seq1  CTGACAAACATCTGATGCAGAAGCACTACAGGGTCACTTACCATTTGTAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAACATCTGATGCAGAAGCACTACAGGGTCACTTACCATTTGTAC  899

seq1  TTAAGGAAAGAAAAATCTCATCCGCATAACCATAAGATAATGAGAGAACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAAAGAAAAATCTCATCCGCATAACCATAAGATAATGAGAGAACA  949

seq1  TATACTTTGACCAAAACTTTGGAAGTGTTGAAGATAGGATAGATCAGAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTTGACCAAAACTTTGGAAGTGTTGAAGATAGGATAGATCAGAAG  999

seq1  TCTACAGAAATGTCAAATTGAAAGAGACAGATAGAACATAAATGCAACAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGAAATGTCAAATTGAAAGAGACAGATAGAACATAAATGCAACAT  1049

seq1  GGTATCCAAAAGACTGGAGGAGAATGAATTC  1075
      |||||||||||||||||||||||||||||||
seq2  GGTATCCAAAAGACTGGAGGAGAATGAATTC  1080


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