BAC Information

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BAC

Clone NameB6Ng01-282C09
Chromosome10 (Build37)
Map Location 80,902,155 - 81,026,303
singlet/doubletdoublet
Overlap geneBrunol5, Ncln, Edg6, Gna15, Gna11, Aes
Upstream geneOnecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic
Downstream geneTle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282C09.bB6Ng01-282C09.g
ACCGA081442GA081443
length657956
definitionB6Ng01-282C09.b B6Ng01-282C09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,025,651 - 81,026,303)(80,902,155 - 80,902,806)
sequence
gaattctccacacagacagacagatgctgaagactgagatggcctggggc
tgagaggaacagagcaccccaaggtgtcctggcttcaggaaactttgtca
tgtccagcccctctttctctctagtcacatcagagccggcagctgaagct
gctttgccttcccatgctgtgtgattctacctctgtgggccccacttgct
ttctctttgtagcagcaaccttcctggaccaggacaggtcagtggagtca
aagaactgggcctgtggcttgctctccagtcctaggaggctactcctagg
tgtggctcttgccaccatgcctagcagtgactctcccaagttgtccttgg
acctccacacctgaacaacagcacgaccccccaatgtaacctttctttct
ttcttcctctctttctttctcttttttcctccttcccttcccttcccttc
ccttcccttcccttaccttcccttcccttcccttcctccctccctccctt
ccttccttctttcttcctatacatggtttctctgtatagccctgtcccgg
aactcataaatcctcctgcctctatctctcgagtgctgaggttataagtt
tatgtgccattttttctcatcatggtattttctatcttaattcaaacaac
tcttaga
gaattctacagaaatgtacagatacctatatatacttacaaatttgtaca
gacacccacagatgactaaagacacctaaaaacttgtacagatgcctatt
cactccttcaggtacctacaattcctcccgacacagacaatatcctgtat
acgtgtaaagtggagacttaagggttctttggaaagtcagttgtgttgga
tggtgttttgctggggcaaacacatgaaggagtgttttcctgaagtaggc
acaggtgaatggatgtttcactaaggctgaccagtaagaaaacgtttcac
tgaagcagacacaggagagaggatgctctgctaaagcaagcatgtgaaag
gacacgtgaggaaggattcttcgctaacaacgtgcatttatttattagtg
tgcctttcattaagtagttgagctccttttgttgagactccatagagaga
aacgcaccaaacaacttgcggtggtgtgctggtcgtgtcttgcctcttcg
gcagactcaggccgattggcaacctgttgtcagctgatagagactcatgt
ggagttttgctaagacagactcatgtgctaaggcagacccgtggaggaca
tgtgatgtttagagggactataaaaaggactcagtggactgtgagagagg
cttgcttatagaaacagctcagcaatacttctcggtctcctgtctttgct
gatctttgcgtcattgacagaggcatagccaagaacttctggtgttgttg
gtagtcctaatctctcctgctgccttgtggcaattctgctgaggcctgga
tgttcctcttgtgccactgccgctgctatcccgacactactggactttat
ggatatggattgctgcatatccataaagggtttgtgagtgatcgagctgc
tgctcctgacctgctcctgacctgctgattttctgacagcacagatggaa
tttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_81025651_81026303
seq2: B6Ng01-282C09.b_43_699 (reverse)

seq1  TCTAAGAGTTGTTTGGATTTAGAAAG-AAATACCCTGATG-GGCTTGATG  48
      ||||||||||||||| ||| ||| || ||||||| ||||| |     |||
seq2  TCTAAGAGTTGTTTGAATTAAGATAGAAAATACCATGATGAGAAAAAATG  50

seq1  GCACA-GGACTT-TAACCTCAGCACTCGAGAGACAGAGGCAGGCGGATCT  96
      |||||   |||| |||||||||||||||||||| ||||||||| |||| |
seq2  GCACATAAACTTATAACCTCAGCACTCGAGAGATAGAGGCAGGAGGATTT  100

seq1  CTGAGTTCCAGGACAGGGCTATACAGAGAAACCCTGTATTGGAAGAAAGA  146
       |||||||| ||||||||||||||||||||||| ||||| ||||||||||
seq2  ATGAGTTCCGGGACAGGGCTATACAGAGAAACCATGTATAGGAAGAAAGA  150

seq1  AGGAAGGAAGGGAGGGAGGGAGGAAGGGAAGGGAAGGGAAGGGAAGGGAA  196
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGAAGGAAGGGAGGGAGGGAGGAAGGGAAGGGAAGGGAAGGTAAGGGAA  200

seq1  GGGAAGGGAAGGGAAGGGAAGGGAAGGAGGAAAAAAGAGAAAGAAAGAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGAAGGGAAGGGAAGGGAAGGAGGAAAAAAGAGAAAGAAAGAGA  250

seq1  GGAAGAAAGAAAGAAAGGTTACATTGGGGGGTCGTGCTGTTGTTCAGGTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGAAAGAAAGGTTACATTGGGGGGTCGTGCTGTTGTTCAGGTG  300

seq1  TGGAGGTCCAAGGACAACTTGGGAGAGTCACTGCTAGGCATGGTGGCAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCCAAGGACAACTTGGGAGAGTCACTGCTAGGCATGGTGGCAAG  350

seq1  AGCCACACCTAGGAGTAGCCTCCTAGGACTGGAGAGCAAGCCACAGGCCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACACCTAGGAGTAGCCTCCTAGGACTGGAGAGCAAGCCACAGGCCC  400

seq1  AGTTCTTTGACTCCACTGACCTGTCCTGGTCCAGGAAGGTTGCTGCTACA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTGACTCCACTGACCTGTCCTGGTCCAGGAAGGTTGCTGCTACA  450

seq1  AAGAGAAAGCAAGTGGGGCCCACAGAGGTAGAATCACACAGCATGGGAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAAGCAAGTGGGGCCCACAGAGGTAGAATCACACAGCATGGGAAG  500

seq1  GCAAAGCAGCTTCAGCTGCCGGCTCTGATGTGACTAGAGAGAAAGAGGGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCAGCTTCAGCTGCCGGCTCTGATGTGACTAGAGAGAAAGAGGGG  550

seq1  CTGGACATGACAAAGTTTCCTGAAGCCAGGACACCTTGGGGTGCTCTGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATGACAAAGTTTCCTGAAGCCAGGACACCTTGGGGTGCTCTGTT  600

seq1  CCTCTCAGCCCCAGGCCATCTCAGTCTTCAGCATCTGTCTGTCTGTGTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAGCCCCAGGCCATCTCAGTCTTCAGCATCTGTCTGTCTGTGTGG  650

seq1  AGAATTC  653
      |||||||
seq2  AGAATTC  657

seq1: chr10_80902155_80902806
seq2: B6Ng01-282C09.g_65_716

seq1  GAATTCTACAGAAATGTACAGATACCTATATATACTTACAAATTTGTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGAAATGTACAGATACCTATATATACTTACAAATTTGTACA  50

seq1  GACACCCACAGATGACTAAAGACACCTAAAAACTTGTACAGATGCCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCACAGATGACTAAAGACACCTAAAAACTTGTACAGATGCCTATT  100

seq1  CACTCCTTCAGGTACCTACAATTCCTCCCGACACAGACAATATCCTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTCAGGTACCTACAATTCCTCCCGACACAGACAATATCCTGTAT  150

seq1  ACGTGTAAAGTGGAGACTTAAGGGTTCTTTGGAAAGTCAGTTGTGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTAAAGTGGAGACTTAAGGGTTCTTTGGAAAGTCAGTTGTGTTGGA  200

seq1  TGGTGTTTTGCTGGGGCAAACACATGAAGGAGTGTTTTCCTGAAGTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTTGCTGGGGCAAACACATGAAGGAGTGTTTTCCTGAAGTAGGC  250

seq1  ACAGGTGAATGGATGTTTCACTAAGGCTGACCAGTAAGAAAACGTTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAATGGATGTTTCACTAAGGCTGACCAGTAAGAAAACGTTTCAC  300

seq1  TGAAGCAGACACAGGAGAGAGGATGCTCTGCTAAAGCAAGCATGTGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCAGACACAGGAGAGAGGATGCTCTGCTAAAGCAAGCATGTGAAAG  350

seq1  GACACGTGAGGAAGGATTCTTCGCTAACAACGTGCATTTATTTATTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACGTGAGGAAGGATTCTTCGCTAACAACGTGCATTTATTTATTAGTG  400

seq1  TGCCTTTCATTAAGTAGTTGAGCTCCTTTTGTTGAGACTCCATAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTCATTAAGTAGTTGAGCTCCTTTTGTTGAGACTCCATAGAGAGA  450

seq1  AACGCACCAAACAACTTGCGGTGGTGTGCTGGTCGTGTCTTGCCTCTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCACCAAACAACTTGCGGTGGTGTGCTGGTCGTGTCTTGCCTCTTCG  500

seq1  GCAGACTCAGGCCGATTGGCAACCTGTTGTCAGCTGATAGAGACTCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTCAGGCCGATTGGCAACCTGTTGTCAGCTGATAGAGACTCATGT  550

seq1  GGAGTTTTGCTAAGACAGACTCATGTGCTAAGGCAGACCCGTGGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTTGCTAAGACAGACTCATGTGCTAAGGCAGACCCGTGGAGGACA  600

seq1  TGTGATGTTTAGAGGGACTATAAAAAGGACTCAGTGGACTGTGAGAGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGTTTAGAGGGACTATAAAAAGGACTCAGTGGACTGTGAGAGAGG  650

seq1  CT  652
      ||
seq2  CT  652