BAC Information

Click to search

BAC

Clone NameB6Ng01-282J17
Chromosome10 (Build37)
Map Location 103,581,337 - 103,661,786
singlet/doubletdoublet
Overlap geneEG627488, EG667692, EG667695, LOC100043292
Upstream geneLrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282J17.bB6Ng01-282J17.g
ACCGA081780GA081781
length981526
definitionB6Ng01-282J17.b B6Ng01-282J17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,581,337 - 103,582,317)(103,661,255 - 103,661,786)
sequence
gaattctataaaatatttggaagtaggtatcctgaattaaaatatttttc
ccttggactggagagattacttgtcagctaagagttcttgatattcttac
agtttcaagtacagttcccagatccttgtaggttactgcacagtcacatg
tattagcagatgttaggacctcctctggcctctacagacacctgcacaaa
tgtacacaggtgggcacaaacatatacacatatatgataattttaaaaat
acgtctttaaaaacaatgtaatccctcttctttttaaaaaatagcattaa
aatgctggagagattttcttcccccaaatttttgtctttacaaaagtcac
agaggcagtactcttcgtcttctagagaggaaggctgtgaatagaaatag
aaagggggagaagacttaacaaagtgtttggatcatgatgaaatgtttcc
actgatgttgctactgatgaaagaaatcatgttagaaacagagatgtgat
caaatattccagacggttccatgagatttcccgtgtatctaagcaggcat
gtataaactattgatatcagagccaagtgtggagtatcttggtctgcagc
agtgagatgtgacatttactggctctgttatacagctgtacatcttagct
tatttcccttatcttcctaatatttaatgtacggcctgaaaaggaatgcc
ttcactcagaatctcagctgagacacatcataacactttattgacagtgt
atttttctctagctgccatgttggtttaacctgacatagagtttgaatgt
attattatgtgtggagttgaaaaatattcacaatgacatttcaagtctat
catcagatacatgcaaaataaagaaccataccaaacctgcaacattcttc
aaaaataccctggaggtattggtaataactgtgttttctctctctctctc
tctctctctctctctctctctctctctctct

ttttatagagagctacctcaagcagaaagctatctagagggtattttgaa
aagactacaaagttgtcagcttgcatccaccattgaccttgagttgcttc
ttgtaatgcactcaagcaccccttcctcaggaaccttgacaaaggtgtgg
caggtcctcaacaatttagagactgatatggaatatatatcccacaggga
gacctggatttacaatggcataagttaaagttactgagatacattgtagg
aaagagttaatgccactgatatctagtttcctattcacacaatattcctt
ttattttctttttaaaatatcctctctctctctctctctctctctctctc
tctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
cgtgtgaatgccctgtgatcctcccctttttcctagtaatctctcctcat
ccctcctttttccatcccttatatagagaaaaattgagcaattactatat
tcaaaaataaacgatatatgtatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103581337_103582317
seq2: B6Ng01-282J17.b_43_1023

seq1  GAATTCTATAAAATATTTGGAAGTAGGTATCCTGAATTAAAATATTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAATATTTGGAAGTAGGTATCCTGAATTAAAATATTTTTC  50

seq1  CCTTGGACTGGAGAGATTACTTGTCAGCTAAGAGTTCTTGATATTCTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACTGGAGAGATTACTTGTCAGCTAAGAGTTCTTGATATTCTTAC  100

seq1  AGTTTCAAGTACAGTTCCCAGATCCTTGTAGGTTACTGCACAGTCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAAGTACAGTTCCCAGATCCTTGTAGGTTACTGCACAGTCACATG  150

seq1  TATTAGCAGATGTTAGGACCTCCTCTGGCCTCTACAGACACCTGCACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAGATGTTAGGACCTCCTCTGGCCTCTACAGACACCTGCACAAA  200

seq1  TGTACACAGGTGGGCACAAACATATACACATATATGATAATTTTAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGGTGGGCACAAACATATACACATATATGATAATTTTAAAAAT  250

seq1  ACGTCTTTAAAAACAATGTAATCCCTCTTCTTTTTAAAAAATAGCATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTTTAAAAACAATGTAATCCCTCTTCTTTTTAAAAAATAGCATTAA  300

seq1  AATGCTGGAGAGATTTTCTTCCCCCAAATTTTTGTCTTTACAAAAGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGGAGAGATTTTCTTCCCCCAAATTTTTGTCTTTACAAAAGTCAC  350

seq1  AGAGGCAGTACTCTTCGTCTTCTAGAGAGGAAGGCTGTGAATAGAAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGTACTCTTCGTCTTCTAGAGAGGAAGGCTGTGAATAGAAATAG  400

seq1  AAAGGGGGAGAAGACTTAACAAAGTGTTTGGATCATGATGAAATGTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGAGAAGACTTAACAAAGTGTTTGGATCATGATGAAATGTTTCC  450

seq1  ACTGATGTTGCTACTGATGAAAGAAATCATGTTAGAAACAGAGATGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTTGCTACTGATGAAAGAAATCATGTTAGAAACAGAGATGTGAT  500

seq1  CAAATATTCCAGACGGTTCCATGAGATTTCCCGTGTATCTAAGCAGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTCCAGACGGTTCCATGAGATTTCCCGTGTATCTAAGCAGGCAT  550

seq1  GTATAAACTATTGATATCAGAGCCAAGTGTGGAGTATCTTGGTCTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAACTATTGATATCAGAGCCAAGTGTGGAGTATCTTGGTCTGCAGC  600

seq1  AGTGAGATGTGACATTTACTGGCTCTGTTATACAGCTGTACATCTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATGTGACATTTACTGGCTCTGTTATACAGCTGTACATCTTAGCT  650

seq1  TATTTCCCTTATCTTCCTAATATTTAATGTACGGCCTGAAAAGGAATGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCTTATCTTCCTAATATTTAATGTACGGCCTGAAAAGGAATGCC  700

seq1  TTCACTCAGAATCTCAGCTGAGACACATCATAACACTTTATTGACAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCAGAATCTCAGCTGAGACACATCATAACACTTTATTGACAGTGT  750

seq1  ATTTTTCTCTAGCTGCCATGTTGGTTTAACCTGACATAGAGTTTGAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTCTAGCTGCCATGTTGGTTTAACCTGACATAGAGTTTGAATGT  800

seq1  ATTATTATGTGTGGAGTTGAAAAATATTCACAATGACATTTCAAGTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATGTGTGGAGTTGAAAAATATTCACAATGACATTTCAAGTCTAT  850

seq1  CATCAGATACATGCAAAATAAAGAACCATACCAAACCTGCAACATTCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATACATGCAAAATAAAGAACCATACCAAACCTGCAACATTCTTC  900

seq1  AAAAATACCCTGGAGGTATTGGTAATAACTGTGTTTTCTCTCTCTCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATACCCTGGAGGTATTGGTAATAACTGTGTTTTCTCTCTCTCTCTC  950

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  981
      |||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  981


seq1: chr10_103661255_103661786
seq2: B6Ng01-282J17.g_67_598 (reverse)

seq1  AATAAACATATGGCGTTTATTTTAGAATATAGTAATTGCTCAATTTTTCT  50
      |||| ||||||  |||||||||| ||||||||||||||||||||||||||
seq2  AATATACATATATCGTTTATTTTTGAATATAGTAATTGCTCAATTTTTCT  50

seq1  CTATATAAGGGAAGGAAAAAGGAGGGATGAGGAGAGATTACTAGGAAAAA  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTATATAAGGGATGGAAAAAGGAGGGATGAGGAGAGATTACTAGGAAAAA  100

seq1  GAGGAGGATCACAGGGCATGCACACGCACACACACACACACACACACACA  150
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGGAGGATCACAGGGCATTCACACGCACACACACACACACACACACACA  150

seq1  CACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  200

seq1  GAGAGGATATTTTAAAAAGAAAATAAAAGGAATATTGTGTGAATAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATATTTTAAAAAGAAAATAAAAGGAATATTGTGTGAATAGGAAA  250

seq1  CTAGATATCAGTGGCATTAACTCTTTCCTACAATGTATCTCAGTAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATATCAGTGGCATTAACTCTTTCCTACAATGTATCTCAGTAACTTT  300

seq1  AACTTATGCCATTGTAAATCCAGGTCTCCCTGTGGGATATATATTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATGCCATTGTAAATCCAGGTCTCCCTGTGGGATATATATTCCATA  350

seq1  TCAGTCTCTAAATTGTTGAGGACCTGCCACACCTTTGTCAAGGTTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCTAAATTGTTGAGGACCTGCCACACCTTTGTCAAGGTTCCTGA  400

seq1  GGAAGGGGTGCTTGAGTGCATTACAAGAAGCAACTCAAGGTCAATGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTGCTTGAGTGCATTACAAGAAGCAACTCAAGGTCAATGGTGG  450

seq1  ATGCAAGCTGACAACTTTGTAGTCTTTTCAAAATACCCTCTAGATAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAGCTGACAACTTTGTAGTCTTTTCAAAATACCCTCTAGATAGCTT  500

seq1  TCTGCTTGAGGTAGCTCTCTATAAAAGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TCTGCTTGAGGTAGCTCTCTATAAAAGAATTC  532


| Home | SequenceCutter | Blast | Download |