BAC Information

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BAC

Clone NameB6Ng01-282O08
Chromosome10 (Build37)
Map Location 68,680,638 - 68,725,781
singlet/doubletdoublet
Overlap geneRhobtb1
Upstream geneArid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26, A930033H14Rik
Downstream geneLOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik, Slc16a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282O08.bB6Ng01-282O08.g
ACCGA081990GA081991
length112816
definitionB6Ng01-282O08.b B6Ng01-282O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,725,671 - 68,725,781)(68,680,638 - 68,681,457)
sequence
tccagcttacctggggttggaaaccccgggtaattcgtagacaaagccct
gggtgtactgagctttaaactcccaaatttgagtagtgagaagatgcggg
ggggggggggtt
gaattcaaaatgagttacaaaaagctaagggacaaaggagaaggaagcgg
gaggtcagagaaaatatggactcggtggaaagggggagagggaaagaagg
ctgggagggcggcaggaggcagtgctcagggacagaatggctacaggttg
gctatttaaagtagtttagtttagtttagtttagtttagtttagtttagt
ttagtttagtttagtttagtttagtttgagaaacacataaatccagtgac
tttaacataaaaccagctatctctcctcccagctcttttgttccacaggc
accttagggcagaggttggaaaatcagccaatcaagacacaggaaatgaa
ggatacgcatagccaggttttcccagacacctgatgtcttcagatattcc
ctctagccgggacccagacatatggactgggaagggtgaactgtcaggag
gtcctgacagagcaattacgcttctctacaccactcttgagtttttcttt
cttgggtaatgacaagttcccagtgtttatgggttttgatctcaggctcc
atctctcagtggagaattgtcttttaatttttttagcccaccataagcca
aaccaagtgaccctcttctaacacatagaccagctagaccaacaactttg
ggctttcttacatttcttctgagatgccaagtgtttgactgcactatgcc
tggtatgcatttttagttccagtttacggaagcacaaaagagaggaagag
aatgtcaagaaactgatcataaagctagattgggttcactgtaaacctga
cagagaagtttgaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_68725671_68725781
seq2: B6Ng01-282O08.b_51_162 (reverse)

seq1  AACCCCCCCCCCCCCGCATCTTCTCACTACTCAAATTTGGGAGTTTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCCCCCCCCCGCATCTTCTCACTACTCAAATTTGGGAGTTTAAAG  50

seq1  CTCAGTACACCCAGGGCTTTGTCTACGAATT-CCCGGGGTTTCCAACCCC  99
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCAGTACACCCAGGGCTTTGTCTACGAATTACCCGGGGTTTCCAACCCC  100

seq1  AGGTAAGCTGGA  111
      ||||||||||||
seq2  AGGTAAGCTGGA  112

seq1: chr10_68680638_68681457
seq2: B6Ng01-282O08.g_67_881

seq1  GAATTCAAAATGAGTTACAAAAAGCTAAGGGACAAAGGAGAAGGAAGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATGAGTTACAAAAAGCTAAGGGACAAAGGAGAAGGAAGCGG  50

seq1  GAGGTCAGAGAAAATATGGACTCGGTGGAAAGGGGGAGAGGGAAAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCAGAGAAAATATGGACTCGGTGGAAAGGGGGAGAGGGAAAGAAGG  100

seq1  CTGGGAGGGCGGCAGGAGGCAGTGCTCAGGGACAGAATGGCTACAGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGGCGGCAGGAGGCAGTGCTCAGGGACAGAATGGCTACAGGTTG  150

seq1  GCTATTTAAAGTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTAGT  200
      |||||||||||          |||||||||||||||||||||||||||||
seq2  GCTATTTAAAG----------TAGTTTAGTTTAGTTTAGTTTAGTTTAGT  190

seq1  TTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTGAGAAACACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTAGTTTGAGAAACACATAA  240

seq1  ATCCAGTGACTTTAACATAAAACCAGCTATCTCTCCTCCCAGCTCTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGACTTTAACATAAAACCAGCTATCTCTCCTCCCAGCTCTTTTG  290

seq1  TTCCACAGGCACCTTAGGGCAGAGGTTGGAAAATCAGCCAATCAAGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACAGGCACCTTAGGGCAGAGGTTGGAAAATCAGCCAATCAAGACAC  340

seq1  AGGAAATGAAGGATACGCATAGCCAGGTTTTCCCAGACACCTGATGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGAAGGATACGCATAGCCAGGTTTTCCCAGACACCTGATGTCTT  390

seq1  CAGATATTCCCTCTAGCCGGGACCCAGACATATGGACTGGGAAGGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCCCTCTAGCCGGGACCCAGACATATGGACTGGGAAGGGTGAA  440

seq1  CTGTCAGGAGGTCCTGACAGAGCAATTACGCTTCTCTACACCACTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGGAGGTCCTGACAGAGCAATTACGCTTCTCTACACCACTCTTGA  490

seq1  GTTTTTCTTTCTTGGGTAATGACAAGTTCCCAGTGTTTATGGGTTTTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTTTCTTGGGTAATGACAAGTTCCCAGTGTTTATGGGTTTTGAT  540

seq1  CTCAGGCTCCATCTCTCAGTGGAGAATTGTCTTTTAATTTTTTTAGCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCTCCATCTCTCAGTGGAGAATTGTCTTTTAATTTTTTTAGCCCA  590

seq1  CCATAAGCCAAACCAAGTGACCCTCTTCTAACACATAGACCAGCTAGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGCCAAACCAAGTGACCCTCTTCTAACACATAGACCAGCTAGACC  640

seq1  AACAAC-TTGGGC-TTCTTACA-TTCTTCTGAGATGCCAAGTGTTTGACT  697
      |||||| |||||| |||||||| |||||||||||||||||||||||||||
seq2  AACAACTTTGGGCTTTCTTACATTTCTTCTGAGATGCCAAGTGTTTGACT  690

seq1  GCACTATGCCTGGTATTCATTTTTAGTTCCAGTTTACGGAAGCAC-AAAG  746
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  GCACTATGCCTGGTATGCATTTTTAGTTCCAGTTTACGGAAGCACAAAAG  740

seq1  AGAGGAAGAGAAGGTCAAGAAACTGATAACAAAGCTTAGATTGGGTTCAC  796
      |||||||||||| |||||||||||||| | ||||| ||||||||||||||
seq2  AGAGGAAGAGAATGTCAAGAAACTGATCATAAAGC-TAGATTGGGTTCAC  789

seq1  TGT-AGCCTGACAGAGAAG-TTGAAT  820
      ||| | ||||||||||||| ||||||
seq2  TGTAAACCTGACAGAGAAGTTTGAAT  815