BAC Information

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BAC

Clone NameB6Ng01-283C05
Chromosome10 (Build37)
Map Location 77,403,759 - 77,555,992
singlet/doubletdoublet
Overlap geneTrpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl
Upstream genePcbp3, LOC100041099, Slc19a1, Col18a1, LOC665762, Pofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3
Downstream geneD10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283C05.bB6Ng01-283C05.g
ACCGA082173GA082174
length9551,071
definitionB6Ng01-283C05.b B6Ng01-283C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,403,759 - 77,404,737)(77,554,932 - 77,555,992)
sequence
gaattcatctcactgggagtttgctgtgtttcctgtggtgacaggggtgt
gcagggcatggcagggcagctgctccaccttactgagatgctgatgttta
tcctgaacccacatgttctgactcctagcctcacctttcagtaacgcctg
cagaatggccacatccacatcctgctgaccatccttgccttcccggaaga
tcgtcagcagctgccgcctccggacaatgtcttggatctgcagcgaatgg
atttcagtgagattcagggctgaagatgctctgcctccttgaaggtcaaa
gagaatcaaggccccaacaaggagtgatactctccagtctgggcaggctc
aggcccagtgagagcagttgccaccaagcctgaaatgtctgacttcaatc
tcctaggacccatatggtagaagaaagacctgacttgcacaaagtatcct
ctgacatccatactgtgtgcattgtagcactagtgtgtgagcacgagcct
cacacacacacacacacacacacacactaaatataacaaaaatacttttg
gataaagagagaaattaaattcagttctctgaattgcctgaataatttat
aatgttaccgagaaaaggctcctggcctgccctacagctcacagcacacc
cagcaaggcagcaaaggtcttcaggactggggaggggataaaggaggggg
atgaggagctcacagaactcaagctgttaccctgctggataatcctatag
agcatctgtcttaggggttttactgctggggaacagacaccatgaccaaa
ggtaactcttatcaaggacatctaaattgggagctggcttacaggttcag
aggttcaagtccattatcatcaagggcaggaacatgtgcagtgtctcagg
cacgaatggttgcaaggagaaagcttgaaaaatctacatcttcatctgaa
agggc
gaattccagttctgaggaggcagacagagacagatctccaagttcaaggc
cagcctggtctacagtgtgagttccaagacagccaggactacacagagaa
actctgtcttgaaaatgagagagagagagactgtcatcccttctctgcca
tgaacttgaactgtaatctaaaatgcccctttctttaaaaaaataaaaat
cttccttacgtttttgtccgttattttgttttgtccataaaaaagtaact
aagacatcgcccaggccctgccctgccctacccactcatgatataagaga
gtgaaaccaatgtgctcacggaggtgtggctcccatgggacacatcaaat
cgaaagagatacggtcctgtgagcaagttggttccggtctggggaaaccc
ccggatgtgcggcctcggaggagacatgcacgaggaatcttaggaaacat
cggagacaggcatgaccaggtgtctgcttggacgaacgggatcactgtta
atgtaggtctgtgtccctacagctaacctatcgggttgaccctacactcg
ctaccagggcctcccgattgactgttggccctgggcagtgacctgcagag
gctctgaccactgtggcctctccttaagcctctgcagtgtgctcatagct
gactgacagtgggccatcctcggatggtcagaatttggcccatcttttca
gggaactccctctgttgcagggcctcttactacatctcctttcctccacg
gacaccgagagcctcaggccgaaatggactggctacccaattgccctgct
gtttgagctgtgagccagcatcccttggcaggttgttgccgctgctgctg
ctgctgtcgctgctactgtcaccgccgccgccgccaccgccgcatttgcc
ctggccacccacgcacagatgcgccaccattgttttcttattttcctctt
ggagtgcttggtggcacctgtgccacatggaacttccattaccctcaaga
tgggagaaggttttgggggggttgaagagcttggaggcagatcatcggat
ggtcctcaaggacctgctgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77403759_77404737
seq2: B6Ng01-283C05.b_47_1001

seq1  GAATTCATCTCACTGGGAGTTTGCTGTGTTTCCTG-GGTGACAGGGGTGT  49
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAATTCATCTCACTGGGAGTTTGCTGTGTTTCCTGTGGTGACAGGGGTGT  50

seq1  GCAGGGCATGGCAGGGCAGCTGCTCCACCTTACTGAGATGCTGATGTTTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCATGGCAGGGCAGCTGCTCCACCTTACTGAGATGCTGATGTTTA  100

seq1  TCCTGAACCCACATGTTCTGACTCCTAGCCTCACCTTTCAGTAACGCCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACCCACATGTTCTGACTCCTAGCCTCACCTTTCAGTAACGCCTG  150

seq1  CAGAATGGCCACATCCACATCCTGCTGACCATCCTTGCCTTCCCGGAAGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCCACATCCACATCCTGCTGACCATCCTTGCCTTCCCGGAAGA  200

seq1  TCGTCAGCAGCTGCCGCCTCCGGACAATGTCTTGGATCTGCAGCGAATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAGCAGCTGCCGCCTCCGGACAATGTCTTGGATCTGCAGCGAATGG  250

seq1  ATTTCAGTGAGATTCAGGGCTGAAGATGCTCTGCCTCCTTGAAGGTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTGAGATTCAGGGCTGAAGATGCTCTGCCTCCTTGAAGGTCAAA  300

seq1  GAGAATCAAGGCCCCAACAAGGAGTGATACTCTCCAGTCTGGGCAGGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCAAGGCCCCAACAAGGAGTGATACTCTCCAGTCTGGGCAGGCTC  350

seq1  AGGCCCAGTGAGAGCAGTTGCCACCAAGCCTGAAATGTCTGACTTCAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTGAGAGCAGTTGCCACCAAGCCTGAAATGTCTGACTTCAATC  400

seq1  TCCTAGGACCCATATGGTAGAAGAAAGACCTGACTTGCACAAAGTATCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGACCCATATGGTAGAAGAAAGACCTGACTTGCACAAAGTATCCT  450

seq1  CTGACATCCATACTGTGTGCATTGTAGCACTAGTGTGTGAGCACGAGCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATCCATACTGTGTGCATTGTAGCACTAGTGTGTGAGCACGAGCCT  500

seq1  CACACACACACACACACACACACACACTAAATATAACAAAAATACTTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACTAAATATAACAAAAATACTTTTG  550

seq1  GATAAAGAGAGAAATTAAATTCAGTTCTCTGAATTGCCTGAATAATTTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAGAGAAATTAAATTCAGTTCTCTGAATTGCCTGAATAATTTAT  600

seq1  AATGTTACCGAGAAAAGGCTCCTGGCCTGCCCTACAGCTCACAGCACACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTACCGAGAAAAGGCTCCTGGCCTGCCCTACAGCTCACAGCACACC  650

seq1  CAGCAAGGCAGCAAAGGTCTTCAGGACTGGGGAGGGGATAAAGGAGGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGGCAGCAAAGGTCTTCAGGACTGGGGAGGGGATAAAGGAGGGGG  700

seq1  ATGAGGAGCTCACAGAACTCAAGCTGTTACCCTGCTGGATAATCCTATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGCTCACAGAACTCAAGCTGTTACCCTGCTGGATAATCCTATAG  750

seq1  AGCATCTGTCTTA-GGGTTTTACTGCT-GGGAACAGACACCATGACC-AA  796
      ||||||||||||| ||||||||||||| ||||||||||||||||||| ||
seq2  AGCATCTGTCTTAGGGGTTTTACTGCTGGGGAACAGACACCATGACCAAA  800

seq1  GGTAACTCTTATC-AGGACATCTAA--TTGGAGCTGGCTTACAGGTTCAG  843
      ||||||||||||| |||||||||||  | |||||||||||||||||||||
seq2  GGTAACTCTTATCAAGGACATCTAAATTGGGAGCTGGCTTACAGGTTCAG  850

seq1  AGGTTC-AGTCCATTATCATCAA-GGCAGGAACATG-GCAGTGTC-CAGG  889
      |||||| |||||||||||||||| |||||||||||| |||||||| ||||
seq2  AGGTTCAAGTCCATTATCATCAAGGGCAGGAACATGTGCAGTGTCTCAGG  900

seq1  CACGAATGG-TGC-AGGAG-AAGC-TGAGAATTCTACATCTTCATCTGAA  935
      ||||||||| ||| ||||| |||| ||| || ||||||||||||||||||
seq2  CACGAATGGTTGCAAGGAGAAAGCTTGAAAAATCTACATCTTCATCTGAA  950

seq1  --GGCTGCTAGTGGAAGAGTGACTTCCAGGCAGCTAGGATGAGGGC  979
        |||                                         
seq2  AGGGC-----------------------------------------  955

seq1: chr10_77554932_77555992
seq2: B6Ng01-283C05.g_64_1134 (reverse)

seq1  GACAGCAGGTTCCTTGAGGACAAT-CGCTGAATCTGCCT-CAAGCTCTTC  48
      ||||||||| ||||||||||| || || || |||||||| ||||||||||
seq2  GACAGCAGG-TCCTTGAGGACCATCCGATG-ATCTGCCTCCAAGCTCTTC  48

seq1  A---CCCCCAAAACCTTCTCCCATCTTGA-GGTAATGGA--GTCCATGTG  92
      |   ||||||||||||||||||||||||| |||||||||   ||||||||
seq2  AACCCCCCCAAAACCTTCTCCCATCTTGAGGGTAATGGAAGTTCCATGTG  98

seq1  GCACAGGTGCCACCAAGCACT-CAAGAGGAAA--TAGAAAACAATGGTGG  139
      ||||||||||||||||||||| ||||||||||   |||||||||||||||
seq2  GCACAGGTGCCACCAAGCACTCCAAGAGGAAAATAAGAAAACAATGGTGG  148

seq1  CGCATCTGTGCGTGGGTGGCCA-GGCAAATGCGGCGGTGGCGGCGGCGGC  188
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGCATCTGTGCGTGGGTGGCCAGGGCAAATGCGGCGGTGGCGGCGGCGGC  198

seq1  GGTGACAGTAGCAGCGACAGCAGCAGCAGCAGCGGCAACAACCTGCCAAG  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGTAGCAGCGACAGCAGCAGCAGCAGCGGCAACAACCTGCCAAG  248

seq1  GGATGCTGGCTCACAGCTCAAACAGCAGGGCAATTGGGTAGCCAGTCCAT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTGGCTCACAGCTCAAACAGCAGGGCAATTGGGTAGCCAGTCCAT  298

seq1  TTCGGCCTGAGGCTCTCGGTGTCCGTGGAGGAAAGGAGATGTAGTAAGAG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGCCTGAGGCTCTCGGTGTCCGTGGAGGAAAGGAGATGTAGTAAGAG  348

seq1  GCCCTGCAACAGAGGGAGTTCCCTGAAAAGATGGGCCAAATTCTGACCAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCAACAGAGGGAGTTCCCTGAAAAGATGGGCCAAATTCTGACCAT  398

seq1  CCGAGGATGGCCCACTGTCAGTCAGCTATGAGCACACTGCAGAGGCTTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGATGGCCCACTGTCAGTCAGCTATGAGCACACTGCAGAGGCTTAA  448

seq1  GGAGAGGCCACAGTGGTCAGAGCCTCTGCAGGTCACTGCCCAGGGCCAAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGCCACAGTGGTCAGAGCCTCTGCAGGTCACTGCCCAGGGCCAAC  498

seq1  AGTCAATCGGGAGGCCCTGGTAGCGAGTGTAGGGTCAACCCGATAGGTTA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCGGGAGGCCCTGGTAGCGAGTGTAGGGTCAACCCGATAGGTTA  548

seq1  GCTGTAGGGACACAGACCTACATTAACAGTGATCCCGTTCGTCCAAGCAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGGACACAGACCTACATTAACAGTGATCCCGTTCGTCCAAGCAG  598

seq1  ACACCTGGTCATGCCTGTCTCCGATGTTTCCTAAGATTCCTCGTGCATGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGTCATGCCTGTCTCCGATGTTTCCTAAGATTCCTCGTGCATGT  648

seq1  CTCCTCCGAGGCCGCACATCCGGGGGTTTCCCCAGACCGGAACCAACTTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCGAGGCCGCACATCCGGGGGTTTCCCCAGACCGGAACCAACTTG  698

seq1  CTCACAGGACCGTATCTCTTTCGATTTGATGTGTCCCATGGGAGCCACAC  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGGACCGTATCTCTTTCGATTTGATGTGTCCCATGGGAGCCACAC  748

seq1  CTCCGTGAGCACATTGGTTTCACTCTCTTATATCATGAGTGGGTAGGGCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGAGCACATTGGTTTCACTCTCTTATATCATGAGTGGGTAGGGCA  798

seq1  GGGCAGGGCCTGGGCGATGTCTTAGTTACTTTTTTATGGACAAAACAAAA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGGCCTGGGCGATGTCTTAGTTACTTTTTTATGGACAAAACAAAA  848

seq1  TAACGGACAAAAACGTAAGGAAGATTTTTATTTTTTTAAAGAAAGGGGCA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGACAAAAACGTAAGGAAGATTTTTATTTTTTTAAAGAAAGGGGCA  898

seq1  TTTTAGATTACAGTTCAAGTTCATGGCAGAGAAGGGATGACAGTCTCTCT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGATTACAGTTCAAGTTCATGGCAGAGAAGGGATGACAGTCTCTCT  948

seq1  CTCTCTCATTTTCAAGACAGAGTTTCTCTGTGTAGTCCTGGCTGTCTTGG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCATTTTCAAGACAGAGTTTCTCTGTGTAGTCCTGGCTGTCTTGG  998

seq1  AACTCACACTGTAGACCAGGCTGGCCTTGAACTTGGAGATCTGTCTCTGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACACTGTAGACCAGGCTGGCCTTGAACTTGGAGATCTGTCTCTGT  1048

seq1  CTGCCTCCTCAGAACTGGAATTC  1061
      |||||||||||||||||||||||
seq2  CTGCCTCCTCAGAACTGGAATTC  1071