BAC Information

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BAC

Clone NameB6Ng01-283C18
Chromosome10 (Build37)
Map Location 103,247,421 - 103,389,209
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneEG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283C18.bB6Ng01-283C18.g
ACCGA082199GA082200
length1,0541,138
definitionB6Ng01-283C18.b B6Ng01-283C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,247,421 - 103,248,474)(103,388,066 - 103,389,209)
sequence
gaattccagtagcaacaaaatgttagtttgtctgaatttctgaaacaagg
agatgggtgtatgtaaatagtataccctgcttgacatttagacaaatgaa
ggcaaggtcatttaatcggaaagaggaggaatttctctttaccagatttt
ctatttcatttgaactgacatctggctctaatttttctttccaacttaaa
attcttttattcacttgatattggttcaaagttgacatttttaaaaaatc
ttgcattttaaaacatcttcataatttagaacacagaatgctattgccat
tatctgcacactagagggcactaagatatgctaacatggcatgcactcag
aatgataccttagataacttctgaggaatcattcttttcactttgaaatc
tttaaaaaagacacagaaaaaaatatagttaatactacactatagatatt
aattttttaaaaaatagcatgaagctatccattttaaattacattttcat
tatatatattggtttaggtctaggatcaagtgtacaatggcaatcgtgtc
aacttttaatttaaggtacattttggtgaatatgaatgtcttgttatatt
agataaaatcttgttgaaaatttcctatgaattttcctaaagttatacct
ctcaaaatcaacttaataatgtctcctactgatctttaatgttaactttt
aaactatcttgatataattgcatcaatctagtataatttcattgaaaaca
caatagcctaccatcgcaaggtctgaaaaataaccagctattattgttgt
tgttgttgttgttgttgttcaggacattaacactcacaatgaatatattt
gcattgtcattttacggtttataaatgtgctcaaaaccacagtggtattt
caattatccgatgacaattttaatttatacttttctcaaatatttcaaaa
tactctacactatttcttgatttcctttctctaagcatttttagattcat
ttataagcagctgattttctcgtttactttgggccttcttttattattct
acta
gaattcttctgcacagctggaaatattgagcaacctatttgctgcaagag
tatcagctagatgactcttcagcatgtgaaattttgactactaatcaata
cagtattacttttccttgcgctttctgctgttctgtgtatttatagaatg
catagtaataatattgctctcaagatttgtgaacactgggtacaatctca
gttattgataccagacagtattgcattgcaacttttaaaaataacttaca
acttcttgtttttaaaacataagggtaggtttttagttatgaagtcattt
gccttgactttgagcctttctttagcttgtgatatttcagcttcttcaag
aaatggaaaggaaaagttcctataatagtaactaccagatgtatttgctg
aactcaatacatgttgccttagatatgtctcaatcaatgttttagcattt
tgtagtgaagaaaacttgaacccactaccacaaatattttggattacagc
tagaacttaatacaagacctgtaagattgcataaaaatttccccaccact
gccaggtagcaaccctaagttgatgttcagctatttgacagaaatgaaga
ctgatactgtcttagtcagggtttctattcctgcacaaacatcatgacca
agaaacaatttggagaggaaagggtttatttggcttacacttccgcattg
ctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcagaaag
caggagctgatgcagaggccatggagggatgttacttactggcttgcttc
acctggcttgctcagcttgctctcttatagaacccaatattaccatccca
gggatggcaccacctacaataggccctccccccttgatcaccaatctaga
aaatgccccacagttggatctcatggaggtacttccccaactgaagctcc
tttctctatgataactgcagcagttgacacagaaaacagatacctcctta
tccattttacttacttttacacataaaggacatttattcactaagtatag
taatgaagttgtctttttatctgaatatattactccctgaacccttatgc
tgtccataccccaatacttaatagctatgagtatctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103247421_103248474
seq2: B6Ng01-283C18.b_43_1096

seq1  GAATTCCAGTAGCAACAAAATGTTAGTTTGTCTGAATTTCTGAAACAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAGCAACAAAATGTTAGTTTGTCTGAATTTCTGAAACAAGG  50

seq1  AGATGGGTGTATGTAAATAGTATACCCTGCTTGACATTTAGACAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGTGTATGTAAATAGTATACCCTGCTTGACATTTAGACAAATGAA  100

seq1  GGCAAGGTCATTTAATCGGAAAGAGGAGGAATTTCTCTTTACCAGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGTCATTTAATCGGAAAGAGGAGGAATTTCTCTTTACCAGATTTT  150

seq1  CTATTTCATTTGAACTGACATCTGGCTCTAATTTTTCTTTCCAACTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCATTTGAACTGACATCTGGCTCTAATTTTTCTTTCCAACTTAAA  200

seq1  ATTCTTTTATTCACTTGATATTGGTTCAAAGTTGACATTTTTAAAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTATTCACTTGATATTGGTTCAAAGTTGACATTTTTAAAAAATC  250

seq1  TTGCATTTTAAAACATCTTCATAATTTAGAACACAGAATGCTATTGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTTAAAACATCTTCATAATTTAGAACACAGAATGCTATTGCCAT  300

seq1  TATCTGCACACTAGAGGGCACTAAGATATGCTAACATGGCATGCACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCACACTAGAGGGCACTAAGATATGCTAACATGGCATGCACTCAG  350

seq1  AATGATACCTTAGATAACTTCTGAGGAATCATTCTTTTCACTTTGAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATACCTTAGATAACTTCTGAGGAATCATTCTTTTCACTTTGAAATC  400

seq1  TTTAAAAAAGACACAGAAAAAAATATAGTTAATACTACACTATAGATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGACACAGAAAAAAATATAGTTAATACTACACTATAGATATT  450

seq1  AATTTTTTAAAAAATAGCATGAAGCTATCCATTTTAAATTACATTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTAAAAAATAGCATGAAGCTATCCATTTTAAATTACATTTTCAT  500

seq1  TATATATATTGGTTTAGGTCTAGGATCAAGTGTACAATGGCAATCGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATTGGTTTAGGTCTAGGATCAAGTGTACAATGGCAATCGTGTC  550

seq1  AACTTTTAATTTAAGGTACATTTTGGTGAATATGAATGTCTTGTTATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAATTTAAGGTACATTTTGGTGAATATGAATGTCTTGTTATATT  600

seq1  AGATAAAATCTTGTTGAAAATTTCCTATGAATTTTCCTAAAGTTATACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATCTTGTTGAAAATTTCCTATGAATTTTCCTAAAGTTATACCT  650

seq1  CTCAAAATCAACTTAATAATGTCTCCTACTGATCTTTAATGTTAACTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATCAACTTAATAATGTCTCCTACTGATCTTTAATGTTAACTTTT  700

seq1  AAACTATCTTGATATAATTGCATCAATCTAGTATAATTTCATTGAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATCTTGATATAATTGCATCAATCTAGTATAATTTCATTGAAAACA  750

seq1  CAATAGCCTACCATCGCAAGGTCTGAAAAATAACCAGCTATTATTGTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCTACCATCGCAAGGTCTGAAAAATAACCAGCTATTATTGTTGT  800

seq1  TGTTGTTGTTGTTGTTGTTCAGGACATTAACACTCACAATGAATATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTCAGGACATTAACACTCACAATGAATATATTT  850

seq1  GCATTGTCATTTTACGGTTTATAAATGTGCTCAAAACCACAGTGGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTCATTTTACGGTTTATAAATGTGCTCAAAACCACAGTGGTATTT  900

seq1  CAATTATCCGATGACAATTTTAATTTATACTTTTCTCAAATATTTCAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATCCGATGACAATTTTAATTTATACTTTTCTCAAATATTTCAAAA  950

seq1  TACTCTACACTATTTCTTGAATTCCTTTCTCTAAGCATTTTTAGATTCAT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACTCTACACTATTTCTTGATTTCCTTTCTCTAAGCATTTTTAGATTCAT  1000

seq1  TTATAAGCAGCTGATTTTCTCCGTTTACCTTTTGGCCTTC-TTTATTA-T  1048
      |||||||||||||||||||| |||||| |||| ||||||| ||||||| |
seq2  TTATAAGCAGCTGATTTTCT-CGTTTA-CTTTGGGCCTTCTTTTATTATT  1048

seq1  CTACTA  1054
      ||||||
seq2  CTACTA  1054

seq1: chr10_103388066_103389209
seq2: B6Ng01-283C18.g_65_1202 (reverse)

seq1  TGAGATTACTCAATAGCTATTAAGTATGGGGTAATGGACAGCATTAGGG-  49
      ||||| ||||| ||||||||||||||| |||  ||||||||||| |||| 
seq2  TGAGA-TACTC-ATAGCTATTAAGTATTGGGGTATGGACAGCATAAGGGT  48

seq1  TCAGGAAGTAATATATTCAGAT-AAAAGACAACTTCATAACTAATACTTT  98
      ||||| |||||||||||||||| ||||||||||||||| ||| |||| ||
seq2  TCAGGGAGTAATATATTCAGATAAAAAGACAACTTCATTACT-ATAC-TT  96

seq1  AGTGAATAAATGTTCCTTTATGTGTAAAAGTAAAGTAAAAATGGGATAAG  148
      |||||||||||| |||||||||||||||||| ||||||||   |||||||
seq2  AGTGAATAAATG-TCCTTTATGTGTAAAAGT-AAGTAAAA--TGGATAAG  142

seq1  GAGGTATCTGTTTTCTGTGTCAACTGCTGCAGTTATCATAGAGAAAGGAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTATCTGTTTTCTGTGTCAACTGCTGCAGTTATCATAGAGAAAGGAG  192

seq1  CTTCAGTTGGGGAAGTACCTCCATGAGATCCAACTGTGGGGCATTTTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTTGGGGAAGTACCTCCATGAGATCCAACTGTGGGGCATTTTCTA  242

seq1  GATTGGTGATCAAGGGGGGAGGGCCTATTGTAGGTGGTGCCATCCCTGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGTGATCAAGGGGGGAGGGCCTATTGTAGGTGGTGCCATCCCTGGG  292

seq1  ATGGTAATATTGGGTTCTATAAGAGAGCAAGCTGAGCAAGCCAGGTGAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAATATTGGGTTCTATAAGAGAGCAAGCTGAGCAAGCCAGGTGAAG  342

seq1  CAAGCCAGTAAGTAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGTAAGTAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTT  392

seq1  CTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAAT  442

seq1  GCGGAAGTGTAAGCCAAATAAACCCTTTCCTCTCCAAATTGTTTCTTGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGAAGTGTAAGCCAAATAAACCCTTTCCTCTCCAAATTGTTTCTTGGT  492

seq1  CATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGTATCAGTCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGTATCAGTCTT  542

seq1  CATTTCTGTCAAATAGCTGAACATCAACTTAGGGTTGCTACCTGGCAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTGTCAAATAGCTGAACATCAACTTAGGGTTGCTACCTGGCAGTG  592

seq1  GTGGGGAAATTTTTATGCAATCTTACAGGTCTTGTATTAAGTTCTAGCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAAATTTTTATGCAATCTTACAGGTCTTGTATTAAGTTCTAGCTG  642

seq1  TAATCCAAAATATTTGTGGTAGTGGGTTCAAGTTTTCTTCACTACAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAAAATATTTGTGGTAGTGGGTTCAAGTTTTCTTCACTACAAAAT  692

seq1  GCTAAAACATTGATTGAGACATATCTAAGGCAACATGTATTGAGTTCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAACATTGATTGAGACATATCTAAGGCAACATGTATTGAGTTCAGC  742

seq1  AAATACATCTGGTAGTTACTATTATAGGAACTTTTCCTTTCCATTTCTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCTGGTAGTTACTATTATAGGAACTTTTCCTTTCCATTTCTTG  792

seq1  AAGAAGCTGAAATATCACAAGCTAAAGAAAGGCTCAAAGTCAAGGCAAAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCTGAAATATCACAAGCTAAAGAAAGGCTCAAAGTCAAGGCAAAT  842

seq1  GACTTCATAACTAAAAACCTACCCTTATGTTTTAAAAACAAGAAGTTGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATAACTAAAAACCTACCCTTATGTTTTAAAAACAAGAAGTTGTA  892

seq1  AGTTATTTTTAAAAGTTGCAATGCAATACTGTCTGGTATCAATAACTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTTTAAAAGTTGCAATGCAATACTGTCTGGTATCAATAACTGAG  942

seq1  ATTGTACCCAGTGTTCACAAATCTTGAGAGCAATATTATTACTATGCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACCCAGTGTTCACAAATCTTGAGAGCAATATTATTACTATGCATT  992

seq1  CTATAAATACACAGAACAGCAGAAAGCGCAAGGAAAAGTAATACTGTATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATACACAGAACAGCAGAAAGCGCAAGGAAAAGTAATACTGTATT  1042

seq1  GATTAGTAGTCAAAATTTCACATGCTGAAGAGTCATCTAGCTGATACTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTAGTCAAAATTTCACATGCTGAAGAGTCATCTAGCTGATACTCT  1092

seq1  TGCAGCAAATAGGTTGCTCAATATTTCCAGCTGTGCAGAAGAATTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAAATAGGTTGCTCAATATTTCCAGCTGTGCAGAAGAATTC  1138