BAC Information

Click to search

BAC

Clone NameB6Ng01-283E11
Chromosome10 (Build37)
Map Location 99,303,931 - 99,455,046
singlet/doubletdoublet
Overlap geneLOC100042246
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283E11.bB6Ng01-283E11.g
ACCGA082281GA082282
length1,1091,158
definitionB6Ng01-283E11.b B6Ng01-283E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,453,918 - 99,455,046)(99,303,931 - 99,305,104)
sequence
gaattcctgcggctcacagtcacctctgtaggcctgggagtgatcctggc
caccatggcaagagtgtagcaatcataaagatgtctcctatctcttccga
ctttgtaaatatttagatgtgaagtgtctgtaatggctgcggcaggagat
ggggctggctgaagaggcttgcaattagagaagtcttgtatacatagttt
gttgctatcgagttcatggagtatgatactgcttgcccactgtggagatc
acaccgactctcccctgctgtctgtgctcgctaactccatcatcaggata
cgccagcatcttgtttggctccagtcccagcactttgaactggatgcatt
gccttctgatgcacagcaatcaaggattaggcctacggtagctttgaatt
tatatcctaattagaggaagaaaaaaaaaaacaaaacagttgaagaattc
tgggatagagagcccatcttcttctggtctttgttctacttctgattaac
aatagaacagagagaaggaagagaagttggagaaatggattcacgctgga
gacattgttctgtactttgctatttaacagttcagatatttataagaact
ttttttctatttctccccacgccttcctttcctccctctctttctctctc
tttttcttcttcttttttttcccaaaaaacgtcatagcagatatattaca
ttctcaggaagtctagtttaataagaggggaaactatgtaaacttatcat
tataaaaggcgacagttcaacaaatatataagtaaaactccgtgagaaat
tcttacatttaaaaccatcaagaacataaaaatgtggtttcattgttatt
atacaataccctgaagaattcagcgtagcctgctgtatcataaccacaat
gaaaatacccctcacctcctttacaatgccctgaagtttcctaatggtac
atagggaatcagagtcccaactgggaatttgcaaacatttgtcctcttct
ctggtctttttttattatttatttttattttctagtcaaacccttgttct
ttcgactttgttctctcttctcatctcctcgtttaaaagatattattatt
tacatgtat
gaattccagagacagaaatatcatctgaaatggtactgagtctagaaagg
acatgatgggtagggggaagacaggacagatgactcagcccattcacatg
gcctttggctcaactactggagttggtaagtgttagctggagctgttaag
tgctttcctgcctttccttccatctctttagagtgacttttgtcagtttc
tcaccttgctactagagagacactttcaaaatgtaaaccacaaattccac
agtgactcccccgccccccacacacacacaactgcccacacagtgaaggt
caaattcccagcatgggctcgcaggaatcttctgttcctttgcctgtgtt
tccacccccctccagccctaaatgccaatggctctgtttatggctcttca
aagcagtcctgttcggtcacctacttatgtctctgccaactgctacttcc
tttgcttacaatgccttggactgcctgcagaactgccacgctgcctttca
tcggggcacagactctgtagtttgtgaacagaggacagcaaactatagcg
acgattgaaattcgaagctttgaccattaacgtatgctcttgctatctaa
aaaccgctttccctttttaacgttaaaattagtgtaaaggaataatagat
tgtaacatgtgaggatgaaaccaaatgcaaatgtcaggggctatgaatgc
agcgttttagaatagatcatgctcatttgcccatcgtccatgtattgctt
ttttcctatgacagctgagttgttataaagaccccaatgaaaaaacctta
ctattctctggtcatttatgggacaaagtgtctgattcctgctttactcc
tgtccttccagttggctttctggaaattcctccccaggagaagattgcgt
tttcagatgacatcctatggcatgcctaagaacccaagtccccctgagga
gatgccagagcttcttagctttttgcatgtatggacctcagcactagcag
agtctcctcacttgtattacagagcgaaaccacacccatccagtattttg
agatcaaagcagtaacacatgtgttattaagcacgagctgatatcaaatc
aggttgttatacgactgatgacatctctgtgacgtgtcttatataattca
cccatcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99453918_99455046
seq2: B6Ng01-283E11.b_46_1154 (reverse)

seq1  ATACATGTAAAATAATAATAATACCTTTTTAAAGGAAGAAGATGAGAAGA  50
      |||||||||    |||||||||| ||||| || |  || |||||||||||
seq2  ATACATGTA----AATAATAATATCTTTTAAACG--AGGAGATGAGAAGA  44

seq1  GAGACAAAGGTCGAAAGAACAAGGGGTTTTGGACTAGAAAAATAAAAATT  100
      ||||  || ||||||||||||||||   || |||||| ||||||||||| 
seq2  GAGAACAAAGTCGAAAGAACAAGGG---TTTGACTAG-AAAATAAAAAT-  89

seq1  AAAATAAAATAAAAAAAAGAACCAGAGGAAAGAAGGGACAAATGTTTTGC  150
       ||||  ||||||||||   |||||||  ||||  ||||||||| |||||
seq2  -AAAT--AATAAAAAAA--GACCAGAG--AAGA--GGACAAATG-TTTGC  129

seq1  AAATT-CCAGTTGGGACTCTGATTCCCTATGTACCATTAGGAAACTTCAG  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCAGTTGGGACTCTGATTCCCTATGTACCATTAGGAAACTTCAG  179

seq1  GGCATTGTAAAGGAGGTGAGGGGTATTTTCATTGTGGTTATGATACAGCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTAAAGGAGGTGAGGGGTATTTTCATTGTGGTTATGATACAGCA  229

seq1  GGCTACGCTGAATTCTTCAGGGTATTGTATAATAACAATGAAACCACATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACGCTGAATTCTTCAGGGTATTGTATAATAACAATGAAACCACATT  279

seq1  TTTATGTTCTTGATGGTTTTAAATGTAAGAATTTCTCACGGAGTTTTACT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTTCTTGATGGTTTTAAATGTAAGAATTTCTCACGGAGTTTTACT  329

seq1  TATATATTTGTTGAACTGTCGCCTTTTATAATGATAAGTTTACATAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTGTTGAACTGTCGCCTTTTATAATGATAAGTTTACATAGTTT  379

seq1  CCCCTCTTATTAAACTAGACTTCCTGAGAATGTAATATATCTGCTATGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTTATTAAACTAGACTTCCTGAGAATGTAATATATCTGCTATGAC  429

seq1  GTTTTTTGGGAAAAAAAAGAAGAAGAAAAAGAGAGAGAAAGAGAGGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGGGAAAAAAAAGAAGAAGAAAAAGAGAGAGAAAGAGAGGGAGG  479

seq1  AAAGGAAGGCGTGGGGAGAAATAGAAAAAAAGTTCTTATAAATATCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGCGTGGGGAGAAATAGAAAAAAAGTTCTTATAAATATCTGAA  529

seq1  CTGTTAAATAGCAAAGTACAGAACAATGTCTCCAGCGTGAATCCATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAATAGCAAAGTACAGAACAATGTCTCCAGCGTGAATCCATTTCT  579

seq1  CCAACTTCTCTTCCTTCTCTCTGTTCTATTGTTAATCAGAAGTAGAACAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTCTTCCTTCTCTCTGTTCTATTGTTAATCAGAAGTAGAACAA  629

seq1  AGACCAGAAGAAGATGGGCTCTCTATCCCAGAATTCTTCAACTGTTTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGAAGAAGATGGGCTCTCTATCCCAGAATTCTTCAACTGTTTTGT  679

seq1  TTTTTTTTTTCTTCCTCTAATTAGGATATAAATTCAAAGCTACCGTAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTCCTCTAATTAGGATATAAATTCAAAGCTACCGTAGGC  729

seq1  CTAATCCTTGATTGCTGTGCATCAGAAGGCAATGCATCCAGTTCAAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCTTGATTGCTGTGCATCAGAAGGCAATGCATCCAGTTCAAAGTG  779

seq1  CTGGGACTGGAGCCAAACAAGATGCTGGCGTATCCTGATGATGGAGTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTGGAGCCAAACAAGATGCTGGCGTATCCTGATGATGGAGTTAG  829

seq1  CGAGCACAGACAGCAGGGGAGAGTCGGTGTGATCTCCACAGTGGGCAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCACAGACAGCAGGGGAGAGTCGGTGTGATCTCCACAGTGGGCAAGC  879

seq1  AGTATCATACTCCATGAACTCGATAGCAACAAACTATGTATACAAGACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATACTCCATGAACTCGATAGCAACAAACTATGTATACAAGACTT  929

seq1  CTCTAATTGCAAGCCTCTTCAGCCAGCCCCATCTCCTGCCGCAGCCATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTGCAAGCCTCTTCAGCCAGCCCCATCTCCTGCCGCAGCCATTA  979

seq1  CAGACACTTCACATCTAAATATTTACAAAGTCGGAAGAGATAGGAGACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTCACATCTAAATATTTACAAAGTCGGAAGAGATAGGAGACAT  1029

seq1  CTTTATGATTGCTACACTCTTGCCATGGTGGCCAGGATCACTCCCAGGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATTGCTACACTCTTGCCATGGTGGCCAGGATCACTCCCAGGCC  1079

seq1  TACAGAGGTGACTGTGAGCCGCAGGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  TACAGAGGTGACTGTGAGCCGCAGGAATTC  1109

seq1: chr10_99303931_99305104
seq2: B6Ng01-283E11.g_66_1223

seq1  GAATTCCAGAGACAGAAATATCATCTGAAATGGTACTGAGTCTAGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACAGAAATATCATCTGAAATGGTACTGAGTCTAGAAAGG  50

seq1  ACATGATGGGTAGGGGGAAGACAGGACAGATGACTCAGCCCATTCACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGGTAGGGGGAAGACAGGACAGATGACTCAGCCCATTCACATG  100

seq1  GCCTTTGGCTCAACTACTGGAGTTGGTAAGTGTTAGCTGGAGCTGTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGGCTCAACTACTGGAGTTGGTAAGTGTTAGCTGGAGCTGTTAAG  150

seq1  TGCTTTCCTGCCTTTCCTTCCATCTCTTTAGAGTGACTTTTGTCAGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTGCCTTTCCTTCCATCTCTTTAGAGTGACTTTTGTCAGTTTC  200

seq1  TCACCTTGCTACTAGAGAGACACTTTCAAAATGTAAACCACAAATTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGCTACTAGAGAGACACTTTCAAAATGTAAACCACAAATTCCAC  250

seq1  AGTGACTCCCCCGCCCCCCACACACACACAACTGCCCACACAGTGAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCCCCCGCCCCCCACACACACACAACTGCCCACACAGTGAAGGT  300

seq1  CAAATTCCCAGCATGGGCTCGCAGGAATCTTCTGTTCCTTTGCCTGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCCAGCATGGGCTCGCAGGAATCTTCTGTTCCTTTGCCTGTGTT  350

seq1  TCCACCCCCCTCCAGCCCTAAATGCCAATGGCTCTGTTTATGGCTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCCCTCCAGCCCTAAATGCCAATGGCTCTGTTTATGGCTCTTCA  400

seq1  AAGCAGTCCTGTTCGGTCACCTACTTATGTCTCTGCCAACTGCTACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTCCTGTTCGGTCACCTACTTATGTCTCTGCCAACTGCTACTTCC  450

seq1  TTTGCTTACAATGCCTTGGACTGCCTGCAGAACTGCCACGCTGCCTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACAATGCCTTGGACTGCCTGCAGAACTGCCACGCTGCCTTTCA  500

seq1  TCGGGGCACAGACTCTGTAGTTTGTGAACAGAGGACAGCAAACTATAGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGCACAGACTCTGTAGTTTGTGAACAGAGGACAGCAAACTATAGCG  550

seq1  ACGATTGAAATTCGAAGCTTTGACCATTAACGTATGCTCTTGCTATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTGAAATTCGAAGCTTTGACCATTAACGTATGCTCTTGCTATCTAA  600

seq1  AAACCGCTTTCCCTTTTTAACGTTAAAATTAGTGTAAAGGAATAATAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGCTTTCCCTTTTTAACGTTAAAATTAGTGTAAAGGAATAATAGAT  650

seq1  TGTAACATGTGAGGATGAAACCAAATGCAAATGTCAGGGGCTATGAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACATGTGAGGATGAAACCAAATGCAAATGTCAGGGGCTATGAATGC  700

seq1  AGCGTTTTAGAATAGATCATGCTCATTTGCCCATCGTCCATGTATTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTTAGAATAGATCATGCTCATTTGCCCATCGTCCATGTATTGCTT  750

seq1  TTTTCCTATGACAGCTGAGTTGTTATAAAGACCCCAATGAAAAAACCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATGACAGCTGAGTTGTTATAAAGACCCCAATGAAAAAACCTTA  800

seq1  CTATTCTCTGGTCATTTATGGGACAAAGTGTCTGATTCCTGCTTTACTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTCTGGTCATTTATGGGACAAAGTGTCTGATTCCTGCTTTACTCC  850

seq1  TGTCCTTCCAGTTGGCTTTCTGGAAATTCCTCCCCAGGAGAAAGATTGCG  900
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGTCCTTCCAGTTGGCTTTCTGGAAATTCCTCCCCAGGAG-AAGATTGCG  899

seq1  TTTTCAGATGACATCCTATGGCATGCCTAAGAACCCAAGT-CCCCTGAGG  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTCAGATGACATCCTATGGCATGCCTAAGAACCCAAGTCCCCCTGAGG  949

seq1  AGATGCCAGAGCTTCTTAGCTTTTTGCATGTATGGACCTCAGCAACTAGC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGATGCCAGAGCTTCTTAGCTTTTTGCATGTATGGACCTCAGC-ACTAGC  998

seq1  AGAGTCTCCTCACTTGTATTACAGAGGCGAAACCACACCCATCCAAGGAA  1049
      ||||||||||||||||||||||||| |||||||||||||||||||  | |
seq2  AGAGTCTCCTCACTTGTATTACAGA-GCGAAACCACACCCATCCA--GTA  1045

seq1  TTTTTGAAGATCAAAGCAGTTAACACCATGTG-TATTTAGCACAGAGCCT  1098
      ||||   |||||||||||| ||||| |||||| |||| ||||| ||| ||
seq2  TTTT--GAGATCAAAGCAG-TAACA-CATGTGTTATTAAGCAC-GAG-CT  1089

seq1  GATATCCAAAACCAGTTTGTTATACAGACTGTATTGACATCTTCCTGTTG  1148
      ||||||  ||| ||| ||||||||| |||||   ||||||||  ||| ||
seq2  GATATC--AAATCAGGTTGTTATAC-GACTG--ATGACATCT--CTG-TG  1131

seq1  ACGTGTCTTATAT-ATTCACCCATCGT  1174
      ||||||||||||| |||||||||||||
seq2  ACGTGTCTTATATAATTCACCCATCGT  1158