BAC Information

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BAC

Clone NameB6Ng01-283N15
Chromosome13 (Build37)10 (Build37)
Map Location 85,455,701 - 85,455,93197,772,338 - 97,773,398
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667111, LOC382786, LOC100042841, LOC100042851, LOC100042857, LOC100042862, Ccnh, Rasa1
Downstream geneLOC435373, LOC675662, Cox7c, LOC100042887, LOC100042893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-283N15.bB6Ng01-283N15.g
ACCGA082705GA082706
length1,1161,064
definitionB6Ng01-283N15.b B6Ng01-283N15.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(85,455,701 - 85,455,931)(97,772,338 - 97,773,398)
sequence
gaattctttgtttagctctgtgccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttatttatatatattggatattagtcccc
tatctgatttaagataggtaaagatgctttcccaatctgttggtggcctt
tttgtcttattggctgtgtcttttgccttacagaagctttgcaattttat
gaagtcccatttgtcgattctagatcttacagcacaagccattaccgttc
tattcaggaagttttcccctgtgcccatatcttcgaggcttttccctact
ttctcctctataagtttcactgtctctggttttatgtggagttccttgat
ccacttatatttgaccttagtacaaggagataggaatggatcaattctca
ttcttctgcataataaccgccagttgtgccagcaccattgttgaaaatgc
tgtctttcttccactggatggtttttgctcccttgtcaaagatcaagtaa
caataggtgtgtgggttcatttctgggtcttcaattctattccattggtc
tacttgtgtgtcaatataccagtaccatgcagtttttatcacaattgctc
tgtagtacagttttaggtccggcatggtgattccaccagaggttctttta
tccttgagaagagtttttgctatcctcggatttctgttattccagatgaa
tttgctgattatcctttctaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttgacaagatagccatttat
actatattgatcctgccaatccatgagcatgggagatctttccatcttct
gagatcttctttaatttctttcttcagagacttgaagtccttatcataca
gatctttcacttcccttagttagagtcacgccaaggtattttataatatt
tgtgacttattgagaagggtgttgtttccctaatttctttctcagcttgt
ttaattctttgtattagaagaaagccatttgacttgtttgagtttaattt
taatatcaagctactttcacgaaagcttgtttatcaggatttaggagttc
ttctggtggattttta

gaattcatttataatcagactcattgtgcacagctctatactgatttgat
aattatagcttggaaacatgtttaagcatttgtgaagctaagaacaacac
catccctttcctctgcatttacaattttcaacccgcccccatatagatga
atctcaaaatcatctactgaagattaaattagatacaggcactacttctt
gcacttctgccatatggtatatgtatatttctgatctttttttgtttctg
agtaaagtaagttcaggttgactgtctgcacgtgttgcttcttacagttt
atagagttctcacagttttctcttgaggtgatatttctcttatttgacac
attttctagtttgtttttgctgctctatagggctgcattaatttctttca
tgtatcactacatggccagggacatacatcttattcctgctagtaatgct
ataagtgtattgtcttcatattggggttgctttttgtattttatgtaagg
tcagttcatactttatgttagactgtcactgtttcctttaggtccgtggg
caaatggatcagggctgctgctcctgcctctgttaatgatagggtgtgtt
tttggctcataagccacaatgcattcttctgagtgggttctaagaatgac
agtgtgcactgaagcaaaacaaatattccatgagtgcattatttatactt
tattgaccaagaatatctgtgctcacaaaaatcaattaaacaaaatccca
agttgtagcactttccaaacagtgccctaaaactacaacctaaacattgt
ggtactagtaacaaaatgtacaaatagcctgtggctgtggccctagttgg
tcattctactttctccaacaaaccagccattgctcataggccaagtctga
atttccttccacctcacaaccaggtacaccaacaagtcttgtccttctca
gaacaatcagccagttatcttcttgcttgggtatttcttgaggagggtaa
gtactctggggatgctcaaataatttaaaaagaaatatttgtttgataat
acatttatacaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_85455701_85455931
seq2: B6Ng01-283N15.b_646_1161 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TAAAAATCCACCAGAAGAACTCCTAAATCCTGATAAACAAGCTTTCGTGA  50

seq1  --------------------------------------------------  0
                                                        
seq2  AAGTAGCTTGATATTAAAATTAAACTCAAACAAGTCAAATGGCTTTCTTC  100

seq1  --------------------------------------------------  0
                                                        
seq2  TAATACAAAGAATTAAACAAGCTGAGAAAGAAATTAGGGAAACAACACCC  150

seq1  --------------------------------------------------  0
                                                        
seq2  TTCTCAATAAGTCACAAATATTATAAAATACCTTGGCGTGACTCTAACTA  200

seq1  --------TAAAAATC-----CACCAGAAATACAGGT----------AGA  27
               ||| |||      |  || | | || ||          |||
seq2  AGGGAAGTGAAAGATCTGTATGATAAGGACTTCAAGTCTCTGAAGAAAGA  250

seq1  AAATCCAAAAAATTTTATATAGAT-------TTTCCAGTGCT--------  62
      || |  | || || | | | ||||       | |||  ||||        
seq2  AATTAAAGAAGATCTCAGA-AGATGGAAAGATCTCCCATGCTCATGGATT  299

seq1  -------TCAAAACAG----------------GTAAA-------------  76
             |||| | ||                || ||             
seq2  GGCAGGATCAATATAGTATAAATGGCTATCTTGTCAAAAGCAATCTACAG  349

seq1  ----AATGTAAT--------TGACTCCAACTCAATTCTTCAAGGAATTAT  114
          |||| |||          | |||||||||||||||||| |||||| 
seq2  ATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAG  399

seq1  AAAGGGCAATCGGCAGATTCATCTGGAATAACAAAAAACCTAGGATAGCA  164
      |||||  |||| ||| ||||||||||||||||| ||| || |||||||||
seq2  AAAGGATAATCAGCAAATTCATCTGGAATAACAGAAATCCGAGGATAGCA  449

seq1  AAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGA  214
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCGGA  499

seq1  CCTAAAGCTGTACTACA  231
      |||||| ||||||||||
seq2  CCTAAAACTGTACTACA  516


seq1: chr10_97772338_97773398
seq2: B6Ng01-283N15.g_66_1129

seq1  GAATTCATTTATAATCAGACTCATTGTGCACAGCTCTATACTGATTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAATCAGACTCATTGTGCACAGCTCTATACTGATTTGAT  50

seq1  AATTATAGCTTGGAAACATGTTTAAGCATTTGTGAAGCTAAGAACAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGCTTGGAAACATGTTTAAGCATTTGTGAAGCTAAGAACAACAC  100

seq1  CATCCCTTTCCTCTGCATTTACAATTTTCAACCCGCCCCCATATAGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTTTCCTCTGCATTTACAATTTTCAACCCGCCCCCATATAGATGA  150

seq1  ATCTCAAAATCATCTACTGAAGATTAAATTAGATACAGGCACTACTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAAATCATCTACTGAAGATTAAATTAGATACAGGCACTACTTCTT  200

seq1  GCACTTCTGCCATATGGTATATGTATATTTCTGATCTTTTTTTGTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTGCCATATGGTATATGTATATTTCTGATCTTTTTTTGTTTCTG  250

seq1  AGTAAAGTAAGTTCAGGTTGACTGTCTGCACGTGTTGCTTCTTACAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTAAGTTCAGGTTGACTGTCTGCACGTGTTGCTTCTTACAGTTT  300

seq1  ATAGAGTTCTCACAGTTTTCTCTTGAGGTGATATTTCTCTTATTTGACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTCTCACAGTTTTCTCTTGAGGTGATATTTCTCTTATTTGACAC  350

seq1  ATTTTCTAGTTTGTTTTTGCTGCTCTATAGGGCTGCATTAATTTCTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTAGTTTGTTTTTGCTGCTCTATAGGGCTGCATTAATTTCTTTCA  400

seq1  TGTATCACTACATGGCCAGGGACATACATCTTATTCCTGCTAGTAATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCACTACATGGCCAGGGACATACATCTTATTCCTGCTAGTAATGCT  450

seq1  ATAAGTGTATTGTCTTCATATTGGGGTTGCTTTTTGTATTTTATGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGTATTGTCTTCATATTGGGGTTGCTTTTTGTATTTTATGTAAGG  500

seq1  TCAGTTCATACTTTATGTTAGACTGTCACTGTTTCCTTTAGGTCCGTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCATACTTTATGTTAGACTGTCACTGTTTCCTTTAGGTCCGTGGG  550

seq1  CAAATGGATCAGGGCTGCTGCTCCTGCCTCTGTTAATGATAGGGTGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGATCAGGGCTGCTGCTCCTGCCTCTGTTAATGATAGGGTGTGTT  600

seq1  TTTGGCTCATAAGCCACAATGCATTCTTCTGAGTGGGTTCTAAGAATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTCATAAGCCACAATGCATTCTTCTGAGTGGGTTCTAAGAATGAC  650

seq1  AGTGTGCACTGAAGCAAAACAAATATTCCATGAGTGCATTATTTATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCACTGAAGCAAAACAAATATTCCATGAGTGCATTATTTATACTT  700

seq1  TATTGACCAAGAATATCTGTGCTCACAAAAATCAATTAAACAAAATCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGACCAAGAATATCTGTGCTCACAAAAATCAATTAAACAAAATCCCA  750

seq1  AGTTGTAGCACTTTCCAAACAGTGCCCTAAAACTACAACCTAAACATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAGCACTTTCCAAACAGTGCCCTAAAACTACAACCTAAACATTGT  800

seq1  GGTACTAGTAACAAAATGTACAAATAGCCTGTGGCTGTGGCCCTAGTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAGTAACAAAATGTACAAATAGCCTGTGGCTGTGGCCCTAGTTGG  850

seq1  TCATTCTACTTTCTCCAACAAACCAGCCATTGCTCATAGGCCAAGTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTACTTTCTCCAACAAACCAGCCATTGCTCATAGGCCAAGTCTGA  900

seq1  A-TTCCTTCCACCTCACAACCAGGTACACCAACAAGTCTTGTCCTTCTCA  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTCCACCTCACAACCAGGTACACCAACAAGTCTTGTCCTTCTCA  950

seq1  G-ACAATCAGCCAG-TATCTTCTTGCTTGGGTATTTCTGAGGGAGGGTAA  997
      | |||||||||||| |||||||||||||||||||||||   |||||||||
seq2  GAACAATCAGCCAGTTATCTTCTTGCTTGGGTATTTCTTGAGGAGGGTAA  1000

seq1  GTACTCTGGGGATGCTCAAAT-ATTTTAAAAGAAATATTGTTTTGATAAA  1046
      ||||||||||||||||||||| |||| ||||||||||||  |||||| ||
seq2  GTACTCTGGGGATGCTCAAATAATTTAAAAAGAAATATTTGTTTGAT-AA  1049

seq1  TACATTATTACAAGC  1061
      ||||||  |||||||
seq2  TACATTTATACAAGC  1064


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