BAC Information

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BAC

Clone NameB6Ng01-285A23
Chromosome10 (Build37)
Map Location 33,775,002 - 33,897,487
singlet/doubletdoublet
Overlap geneBB146404, A630077B13Rik, Dse
Upstream geneTrdn, A330019N05Rik, LOC100040686, EG215895, LOC100041399, Sult3a1, Rshl3, 2700019D07Rik, LOC672399, LOC666127, Rwdd1, 4732454E20Rik
Downstream geneTspyl1, Tspyl4, Nt5dc1, Col10a1, Frk, LOC667824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285A23.bB6Ng01-285A23.g
ACCGA083607GA083608
length1,1101,071
definitionB6Ng01-285A23.b B6Ng01-285A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,775,002 - 33,776,111)(33,896,419 - 33,897,487)
sequence
gaattccaaattgtcccccataattgggaacatactatcaattacatatt
cctatttgtttagaatccacttctaaatttttttatcaactacattagaa
tatatacaatagataaaagggggtgatttggaatctgcaaatgtagttct
gtttcctactatccagatgagcttgaaaagcttttttagtctttttattc
tatatacctattctgtaaaatggcaatgactaccacactgattacctcaa
tgactatagttgaattaaaataatatagatagtggaaatcatactatatg
ctgtaaagttgcaaatgtaagttattagtctacctctaaaaatgctgtca
aatttccagacccattaagactgatttccctgagaccatggtttcataga
acatacacaagtatggaaatacttcacatagtataaaatttgatcccata
tatctgcctgtaaaaaccgcctgcagtaattagtttttatgtagtgcatt
ataatgcgttttacagtatatatcatctctttgatagtcaaattattctg
tgaggtaggtattactactgccatttcacagatgtggaaactgagccaca
gagcaataaagtggcttgcccatggccacacagccagcaatcaggggagc
tgcaactgaattggagccttgtcaaccatcccaagctctttcaactgtgc
cacactcttcttcaaagggcttgccaatctttgctttatagaaagagtgt
tctagaaccaataggactaattgtctcaagatgtaagcaacagaagactg
ccttctcaacagaatcttccatgtctatttctagaacagctttgaaatcc
cacaccctgcagttgtcatgatgagatttcttatttaaactttaaatatt
tgtacttttgcataaatagagcatccaatagcttagaaactatcaagaga
aagctagggtttactctctttgccagaatcattatacattattaaactgc
agagcacccattttgagcaacagctctgtaagaaaatatatgcttttcgt
taaaattgctgatgcctgttatgaaaatttatcttttgaaacaagattct
aaattatatt
gaattctttagtagactttttcttatgttaggaaaatgatgaaatggcag
catgcttgtccatcatattagatggattgctgtaagcttgatctactcag
tgtatgtatttatttgatgatctagaacttaatgaaaataaaacaaaagg
ctcactcagttattggagaccactgcttacagggcagaaaagtataagct
taccatgcctcatttaatcagacatggagatgaaaacattgtgaagagat
ttaagattgtgatggaagggatttgctcaagctggagttgatagctggga
ggtaccaagtgtgcattgcccagtagtggatttggggggctttcctctta
atttgtgaacccatcggaaacatacccaacaaaggggtctttggggtaga
tgagtgtcttgtttgtgtccttgtgtcctgattctgttgtaattagcccc
gtgtcctctggcagatttcatagctgctatcaacatggttttttatatct
gtaaaatgtagacgaatctttcctccatgaggtcccaaggatggaataag
gtgatgctcaaaaagctcttaggattatagagttggcacacagttgtact
aaaacttcattctttttgttatacagaaagaggcaaagataacaagattg
tcaagtcttgggtgcagagtattccttttagctactctgctgctctggag
ttgtgtttctgagaagtatctgtagtgggtcactctttctccctttcctt
atgtttctgctgtatcatgagacagaaaataagtcacagaggaaacaaat
gacttctctcttgtgtcggagctagttgactacagggaatccagagaact
agtgagggaaaatataagttgaacttttggacagagatctaatttttttt
tcctctgcaacagattattaaattcttacatatggattgcaagcttctgg
caaatcctagggtgtgtttgtaaaataatataaaacagcaagagaaaggg
gtttataaaaaaagaaaatctccatcacactgaaattggacattccgtgg
ttttgttgcttcgatgactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_33775002_33776111
seq2: B6Ng01-285A23.b_45_1154

seq1  GAATTCCAAATTGTCCCCCATAATTGGGAACATACTATCAATTACATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAATTGTCCCCCATAATTGGGAACATACTATCAATTACATATT  50

seq1  CCTATTTGTTTAGAATCCACTTCTAAATTTTTTTATCAACTACATTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTTTAGAATCCACTTCTAAATTTTTTTATCAACTACATTAGAA  100

seq1  TATATACAATAGATAAAAGGGGGTGATTTGGAATCTGCAAATGTAGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACAATAGATAAAAGGGGGTGATTTGGAATCTGCAAATGTAGTTCT  150

seq1  GTTTCCTACTATCCAGATGAGCTTGAAAAGCTTTTTTAGTCTTTTTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTACTATCCAGATGAGCTTGAAAAGCTTTTTTAGTCTTTTTATTC  200

seq1  TATATACCTATTCTGTAAAATGGCAATGACTACCACACTGATTACCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCTATTCTGTAAAATGGCAATGACTACCACACTGATTACCTCAA  250

seq1  TGACTATAGTTGAATTAAAATAATATAGATAGTGGAAATCATACTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATAGTTGAATTAAAATAATATAGATAGTGGAAATCATACTATATG  300

seq1  CTGTAAAGTTGCAAATGTAAGTTATTAGTCTACCTCTAAAAATGCTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAAGTTGCAAATGTAAGTTATTAGTCTACCTCTAAAAATGCTGTCA  350

seq1  AATTTCCAGACCCATTAAGACTGATTTCCCTGAGACCATGGTTTCATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAGACCCATTAAGACTGATTTCCCTGAGACCATGGTTTCATAGA  400

seq1  ACATACACAAGTATGGAAATACTTCACATAGTATAAAATTTGATCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACAAGTATGGAAATACTTCACATAGTATAAAATTTGATCCCATA  450

seq1  TATCTGCCTGTAAAAACCGCCTGCAGTAATTAGTTTTTATGTAGTGCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCCTGTAAAAACCGCCTGCAGTAATTAGTTTTTATGTAGTGCATT  500

seq1  ATAATGCGTTTTACAGTATATATCATCTCTTTGATAGTCAAATTATTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCGTTTTACAGTATATATCATCTCTTTGATAGTCAAATTATTCTG  550

seq1  TGAGGTAGGTATTACTACTGCCATTTCACAGATGTGGAAACTGAGCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGGTATTACTACTGCCATTTCACAGATGTGGAAACTGAGCCACA  600

seq1  GAGCAATAAAGTGGCTTGCCCATGGCCACACAGCCAGCAATCAGGGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATAAAGTGGCTTGCCCATGGCCACACAGCCAGCAATCAGGGGAGC  650

seq1  TGCAACTGAATTGGAGCCTTGTCAACCATCCCAAGCTCTTTCAACTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACTGAATTGGAGCCTTGTCAACCATCCCAAGCTCTTTCAACTGTGC  700

seq1  CACACTCTTCTTCAAAGGGCTTGCCAATCTTTGCTTTATAGAAAGAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTTCTTCAAAGGGCTTGCCAATCTTTGCTTTATAGAAAGAGTGT  750

seq1  TCTAGAACCAATAGGACTAATTGTCTCAAGATGTAAGCAACAGAAGACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAACCAATAGGACTAATTGTCTCAAGATGTAAGCAACAGAAGACTG  800

seq1  CCTTCTCAACAGAATCTTCCATGTCTATTTCTAGAACAGCTTTGAAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCAACAGAATCTTCCATGTCTATTTCTAGAACAGCTTTGAAATCC  850

seq1  CACACCCTGCAGTTGTCATGATGAGATTTCTTATTTAAACTTTAAATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCCTGCAGTTGTCATGATGAGATTTCTTATTTAAACTTTAAATATT  900

seq1  TGTACTTTTGCATAAATAGAGCATCCAATAGCTTAGAAACTATCAAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTTTGCATAAATAGAGCATCCAATAGCTTAGAAACTATCAAGAGA  950

seq1  AAGCTAGGGTTTACTCTCTTTGCCAGAATCATTATACATTATTAAACTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGGTTTACTCTCTTTGCCAGAATCATTATACATTATTAAACTGC  1000

seq1  AGAGCACCCATTTTGAGCAACAGCTCTGTAAGAAAATATATGCTTTTCGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCCATTTTGAGCAACAGCTCTGTAAGAAAATATATGCTTTTCGT  1050

seq1  TAAAATTGCTGATGGCTGTTATGAAAATTTATCTTTTAAAAACAAGATTC  1100
      |||||||||||||| ||||||||||||||||||||||  |||||||||||
seq2  TAAAATTGCTGATGCCTGTTATGAAAATTTATCTTTT-GAAACAAGATTC  1099

seq1  TAAA-TATATT  1110
      |||| ||||||
seq2  TAAATTATATT  1110

seq1: chr10_33896419_33897487
seq2: B6Ng01-285A23.g_64_1134 (reverse)

seq1  GCAGTTCATCG-AGCAACAAAACCACCGAATGGTCCATTTCAGTGTGATG  49
      |||| |||||| |||||||||||||| |||||  | ||||||||||||||
seq2  GCAG-TCATCGAAGCAACAAAACCACGGAATGTCCAATTTCAGTGTGATG  49

seq1  GAGATTTTTCTTTTTTATAAACCCCTTTCTCTTGCTGTTTTATATTATTT  99
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTCTTTTTTTATAAACCCCTTTCTCTTGCTGTTTTATATTATTT  99

seq1  TACAAACACACCCTAGGATTT--CAGAAGCTTGCAATCCATATGTAAGAA  147
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  TACAAACACACCCTAGGATTTGCCAGAAGCTTGCAATCCATATGTAAGAA  149

seq1  TTTAATAATCTGTTGCAGAGG-AAAAAAAATTAGATCTCTGTCCAAAAGT  196
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTAATAATCTGTTGCAGAGGAAAAAAAAATTAGATCTCTGTCCAAAAGT  199

seq1  TCAACTTATATTTTTCCCTCACTAGTTCTCTGGATTCCCTGTAGTCAACT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAACTTATA-TTTTCCCTCACTAGTTCTCTGGATTCCCTGTAGTCAACT  248

seq1  AGCTCCGACACAAGAGAGAAGTCATTTGTTTCCTCTGTGACTTATTTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGACACAAGAGAGAAGTCATTTGTTTCCTCTGTGACTTATTTTCT  298

seq1  GTCTCATGATACAGCAGAAACATAAGGAAAGGGAGAAAGAGTGACCCACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGATACAGCAGAAACATAAGGAAAGGGAGAAAGAGTGACCCACT  348

seq1  ACAGATACTTCTCAGAAACACAACTCCAGAGCAGCAGAGTAGCTAAAAGG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACTTCTCAGAAACACAACTCCAGAGCAGCAGAGTAGCTAAAAGG  398

seq1  AATACTCTGCACCCAAGACTTGACAATCTTGTTATCTTTGCCTCTTTCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTGCACCCAAGACTTGACAATCTTGTTATCTTTGCCTCTTTCTG  448

seq1  TATAACAAAAAGAATGAAGTTTTAGTACAACTGTGTGCCAACTCTATAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAAAAGAATGAAGTTTTAGTACAACTGTGTGCCAACTCTATAAT  498

seq1  CCTAAGAGCTTTTTGAGCATCACCTTATTCCATCCTTGGGACCTCATGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAGCTTTTTGAGCATCACCTTATTCCATCCTTGGGACCTCATGGA  548

seq1  GGAAAGATTCGTCTACATTTTACAGATATAAAAAACCATGTTGATAGCAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTCGTCTACATTTTACAGATATAAAAAACCATGTTGATAGCAG  598

seq1  CTATGAAATCTGCCAGAGGACACGGGGCTAATTACAACAGAATCAGGACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAATCTGCCAGAGGACACGGGGCTAATTACAACAGAATCAGGACA  648

seq1  CAAGGACACAAACAAGACACTCATCTACCCCAAAGACCCCTTTGTTGGGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACACAAACAAGACACTCATCTACCCCAAAGACCCCTTTGTTGGGT  698

seq1  ATGTTTCCGATGGGTTCACAAATTAAGAGGAAAGCCCCCCAAATCCACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCCGATGGGTTCACAAATTAAGAGGAAAGCCCCCCAAATCCACTA  748

seq1  CTGGGCAATGCACACTTGGTACCTCCCAGCTATCAACTCCAGCTTGAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATGCACACTTGGTACCTCCCAGCTATCAACTCCAGCTTGAGCA  798

seq1  AATCCCTTCCATCACAATCTTAAATCTCTTCACAATGTTTTCATCTCCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTTCCATCACAATCTTAAATCTCTTCACAATGTTTTCATCTCCAT  848

seq1  GTCTGATTAAATGAGGCATGGTAAGCTTATACTTTTCTGCCCTGTAAGCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATTAAATGAGGCATGGTAAGCTTATACTTTTCTGCCCTGTAAGCA  898

seq1  GTGGTCTCCAATAACTGAGTGAGCCTTTTGTTTTATTTTCATTAAGTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCTCCAATAACTGAGTGAGCCTTTTGTTTTATTTTCATTAAGTTCT  948

seq1  AGATCATCAAATAAATACATACACTGAGTAGATCAAGCTTACAGCAATCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATCAAATAAATACATACACTGAGTAGATCAAGCTTACAGCAATCC  998

seq1  ATCTAATATGATGGACAAGCATGCTGCCATTTCATCATTTTCCTAACATA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATATGATGGACAAGCATGCTGCCATTTCATCATTTTCCTAACATA  1048

seq1  AGAAAAAGTCTACTAAAGAATTC  1069
      |||||||||||||||||||||||
seq2  AGAAAAAGTCTACTAAAGAATTC  1071