BAC Information

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BAC

Clone NameB6Ng01-285L08
Chromosome10 (Build37)
Map Location 102,486,845 - 102,709,915
singlet/doubletdoublet
Overlap geneCart1, Lrriq1
Upstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
Downstream geneLOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285L08.bB6Ng01-285L08.g
ACCGA084087GA084088
length1,1691,113
definitionB6Ng01-285L08.b B6Ng01-285L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,486,845 - 102,487,985)(102,708,800 - 102,709,915)
sequence
gaattcaatactttcccacttaaagcaaagcaataaaagtaaatgaaaaa
agtcctttcttttgatttattactgtctttcaaattagtacttattactt
gacaactaataaagtgtaattttaaaatatcagctctacttacaagaaaa
tactgctgagaaagcatgcaacattttatctagatctttttctttttagt
ttttttaaagaaattaaattcattgaattataattatttgactaaacaat
ttctaaatataaccaagggcatgcaaaattacttaaactgcattattaat
atttatgctgaaaaatatgtataattacctagatctttaaaactaaaatg
cagtattacgtgctgaagtggttgggcctaaagaaaactctaaatgagcc
attctatgtatcttaaatcttattagtaaaaataacatatgatatataat
atatagatacatatatatatagtttgtgctcttattttattttccattac
aataattccaactaaaataaagctatagacctatgggatagtatataaat
aatttgcatataactggtatataatctaaaataaaatatgaatagttgaa
aataaaacaaaaaataaattaaatatatgtatttataaagtaaggataag
tttaaggttttatttttaaatcacatgtatgttaattctggggttttttt
ttttaatgacttcattattaaccttctgaaatacctcctgtccctatact
tagtaagttttcaaaatttttgcaagtataaagaaatttttatttggcca
atttcctcacatgttactttggtacaagtcttagctgagaatgcttcttc
ctttttgacaaaatacaagtatttaattattctaacattatcccacccct
gaaaagccctgcctttttggtgcttacctggacccttgggcctcagtgag
cctccgttcttcaagggcaagtttgttcttctgacataatacatctgggg
tattgggttttttctgggaaaaactttctccagctcctccaagctgcaaa
ctggttaaaagggtagttccggtgtctccctcctttttgcttgctggata
acattgcctgtcaacattttgtccccaagtccattcaagttcgctcttcc
tggcctccctttcacggga
gaattcctctggtaggtttcatgtgtggctccccaatttgctctgtgtgt
cacccattattgaagtggaaaggaaaagacaaaaaaatcacccaggcaag
tgttgcttatgcaagtgaggtgaagttatacatactctttgctttcatac
ttcactcacacagtgtcatatagcctgaatctgctgtagaaggtggcaaa
taaattcctgggaagatgatgaattaaggtacagaggactaaacccaaga
tacctacaagtaagaaatgggcaatgaaactttgtatatagtttccaaat
tctttcttatggaaaatatggaggattataagaaaaaattatgtaggatg
agaaaaattaaaaataacagcaagcactggaaatgagaaaaattgaggat
tctttcataaattcagcaattagagtaattgttttagtgtgactaggatc
tatagttactaagaatggagttgaggtgagttacaggagctcagtatata
tgagggatattgatgaagttatccaaagtaatggagtgagcaaaaagtga
ggcacttgaatatgtattagaaaatgtacagctcagatgaagaagaacag
tataattgggaacttggaatttttaagtaaaaagttgcatgattgtcaag
gatatcagtagaggaagatattgctggaggtatgttttatcaaaagagtc
aaaagaggctaaacactttcaaagggagttgagttggtaaagaggcagac
aagagtcatttcaaaagagagcttgaaagtgttagaacatgacaagcagg
ttgttgaagcaataatccaagaaagatcatgatgtttacaaggataggat
atggttacttgagggtctgctcatttatataagtctcacaagtggcaata
ctaaaaacgggctaacccaagaatactcaagtgcattacagttttcataa
gaaattatttgtgatatagaagatacatatctgagccaaggcgtgaggcg
cacgccttaatcccagcacttgggaagcagagcaagcgatttcttgagtt
tgagccagcctgtctacaagtgagctccaggaacagcaggcttatacaga
ggaacccctgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_102486845_102487985
seq2: B6Ng01-285L08.b_43_1211

seq1  GAATTCAATACTTTCCCACTTAAAGCAAAGCAATAAAAGTAAATGAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATACTTTCCCACTTAAAGCAAAGCAATAAAAGTAAATGAAAAA  50

seq1  AGTCCTTTCTTTTGATTTATTACTGTCTTTCAAATTAGTACTTATTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTCTTTTGATTTATTACTGTCTTTCAAATTAGTACTTATTACTT  100

seq1  GACAACTAATAAAGTGTAATTTTAAAATATCAGCTCTACTTACAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACTAATAAAGTGTAATTTTAAAATATCAGCTCTACTTACAAGAAAA  150

seq1  TACTGCTGAGAAAGCATGCAACATTTTATCTAGATCTTTTTCTTTTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTGAGAAAGCATGCAACATTTTATCTAGATCTTTTTCTTTTTAGT  200

seq1  TTTTTTAAAGAAATTAAATTCATTGAATTATAATTATTTGACTAAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAGAAATTAAATTCATTGAATTATAATTATTTGACTAAACAAT  250

seq1  TTCTAAATATAACCAAGGGCATGCAAAATTACTTAAACTGCATTATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATATAACCAAGGGCATGCAAAATTACTTAAACTGCATTATTAAT  300

seq1  ATTTATGCTGAAAAATATGTATAATTACCTAGATCTTTAAAACTAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTGAAAAATATGTATAATTACCTAGATCTTTAAAACTAAAATG  350

seq1  CAGTATTACGTGCTGAAGTGGTTGGGCCTAAAGAAAACTCTAAATGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTACGTGCTGAAGTGGTTGGGCCTAAAGAAAACTCTAAATGAGCC  400

seq1  ATTCTATGTATCTTAAATCTTATTAGTAAAAATAACATATGATATATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATGTATCTTAAATCTTATTAGTAAAAATAACATATGATATATAAT  450

seq1  ATATAGATACATATATATATAGTTTGTGCTCTTATTTTATTTTCCATTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATACATATATATATAGTTTGTGCTCTTATTTTATTTTCCATTAC  500

seq1  AATAATTCCAACTAAAATAAAGCTATAGACCTATGGGATAGTATATAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCCAACTAAAATAAAGCTATAGACCTATGGGATAGTATATAAAT  550

seq1  AATTTGCATATAACTGGTATATAATCTAAAATAAAATATGAATAGTTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATATAACTGGTATATAATCTAAAATAAAATATGAATAGTTGAA  600

seq1  AATAAAACAAAAAATAAATTAAATATATGTATTTATAAAGTAAGGATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAAAAATAAATTAAATATATGTATTTATAAAGTAAGGATAAG  650

seq1  TTTAAGGTTTTATTTTTAAATCACATGTATGTTAATTCTGGGGTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTTTTATTTTTAAATCACATGTATGTTAATTCTGGGGTTTTTTT  700

seq1  TTTTAATGACTTCATTATTAACCTTCTGAAATACCTCCTGTCCCTATACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGACTTCATTATTAACCTTCTGAAATACCTCCTGTCCCTATACT  750

seq1  TAGTAAGTTTTCAAAATTTTTGCAAGTATAAAGAAATTTTTA-TTGGCCA  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGTAAGTTTTCAAAATTTTTGCAAGTATAAAGAAATTTTTATTTGGCCA  800

seq1  ATTTCCTCACATGTTACTTTGGTACAAGTCTTAGCTGAGAATGCTTCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCACATGTTACTTTGGTACAAGTCTTAGCTGAGAATGCTTCTTC  850

seq1  CTTTTTGACAAAATACAAGTATTTAATTATTCTAACATTATCCCA-CCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTTTGACAAAATACAAGTATTTAATTATTCTAACATTATCCCACCCCT  900

seq1  GAAAAGCCCTGCC-TTTTGGTGCCTACCTGGACCCT--GGCCTCAGTGAG  945
      ||||||||||||| ||||||||| ||||||||||||  ||||||||||||
seq2  GAAAAGCCCTGCCTTTTTGGTGCTTACCTGGACCCTTGGGCCTCAGTGAG  950

seq1  -CTCCGTTCT--CAGGGCAAG-TTGTTC-TCTGACAT-ATACATCT-GGG  988
       |||||||||   |||||||| |||||| |||||||| |||||||| |||
seq2  CCTCCGTTCTTCAAGGGCAAGTTTGTTCTTCTGACATAATACATCTGGGG  1000

seq1  TAATGGG--TTTTCTGG--AAAACTTTCTCCAGTTCCTCC-AGCTGCAAA  1033
      || ||||  ||||||||  |||||||||||||| |||||| |||||||||
seq2  TATTGGGTTTTTTCTGGGAAAAACTTTCTCCAGCTCCTCCAAGCTGCAAA  1050

seq1  CTGGT---AAAGGTAGTT-CGGTGTCTCC--TCTTTTTGC-TGCTGGAT-  1075
      |||||   || ||||||| ||||||||||   |||||||| |||||||| 
seq2  CTGGTTAAAAGGGTAGTTCCGGTGTCTCCCTCCTTTTTGCTTGCTGGATA  1100

seq1  ACATTG-CTGTC-ACA-TTTGTCCCCAAGTTCA-TCCAGTTCGCTCTTCT  1121
      |||||| ||||| ||| ||||||||||||| || || |||||||||||| 
seq2  ACATTGCCTGTCAACATTTTGTCCCCAAGTCCATTCAAGTTCGCTCTTC-  1149

seq1  CTGGCATCCCTTTCACGGGA  1141
      ||||| ||||||||||||||
seq2  CTGGCCTCCCTTTCACGGGA  1169

seq1: chr10_102708800_102709915
seq2: B6Ng01-285L08.g_68_1180 (reverse)

seq1  AGACA-GGGTTTCTCTGTATAGCCCTGGCTG-TCCTGGAGCTCACTTTGT  48
      ||||| ||||| |||||||||  ||| |||| ||||||||||||| ||||
seq2  AGACAGGGGTTCCTCTGTATAAGCCT-GCTGTTCCTGGAGCTCAC-TTGT  48

seq1  AGACCAGGCTGGCCTCAAACTCAGAAATTCGCCTGCCTCTGCTTCCCAAG  98
      ||| |||||||| ||||||||||  || |||| || ||||||||||||||
seq2  AGA-CAGGCTGG-CTCAAACTCAAGAAATCGCTTG-CTCTGCTTCCCAAG  95

seq1  TGCTGGGATTAAAGGCGTGCGCCTCCACGCC-TGGCTCAGATATGTATCT  147
      |||||||||| ||||||||||||| |||||| ||||||||||||||||||
seq2  TGCTGGGATT-AAGGCGTGCGCCT-CACGCCTTGGCTCAGATATGTATCT  143

seq1  TCTATATCACAAAT-ATTTC-TATGAAAACTGTAATGCACTTGAGTATTC  195
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TCTATATCACAAATAATTTCTTATGAAAACTGTAATGCACTTGAGTATTC  193

seq1  TTGGGTTAGCCCGTTTTTAGTATTGCCACCTTGTGAGACTTATATAAATG  245
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTGGGTTAGCCCGTTTTTAGTATTGCCA-CTTGTGAGACTTATATAAATG  242

seq1  AGCAGACCCTCAAGTAACCATATCCTATCCTTGTAAACATCATGATCTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACCCTCAAGTAACCATATCCTATCCTTGTAAACATCATGATCTTT  292

seq1  CTTGGATTATTGCTTCAACAACCTGCTTGTCATGTTCTAACACTTTCAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATTATTGCTTCAACAACCTGCTTGTCATGTTCTAACACTTTCAAG  342

seq1  CTCTCTTTTGAAATGACTCTTGTCTGCCTCTTTACCAACTCAACTCCCTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTGAAATGACTCTTGTCTGCCTCTTTACCAACTCAACTCCCTT  392

seq1  TGAAAGTGTTTAGCCTCTTTTGACTCTTTTGATAAAACATACCTCCAGCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGTTTAGCCTCTTTTGACTCTTTTGATAAAACATACCTCCAGCA  442

seq1  ATATCTTCCTCTACTGATATCCTTGACAATCATGCAACTTTTTACTTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCCTCTACTGATATCCTTGACAATCATGCAACTTTTTACTTAAA  492

seq1  AATTCCAAGTTCCCAATTATACTGTTCTTCTTCATCTGAGCTGTACATTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGTTCCCAATTATACTGTTCTTCTTCATCTGAGCTGTACATTT  542

seq1  TCTAATACATATTCAAGTGCCTCACTTTTTGCTCACTCCATTACTTTGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATACATATTCAAGTGCCTCACTTTTTGCTCACTCCATTACTTTGGA  592

seq1  TAACTTCATCAATATCCCTCATATATACTGAGCTCCTGTAACTCACCTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCATCAATATCCCTCATATATACTGAGCTCCTGTAACTCACCTCA  642

seq1  ACTCCATTCTTAGTAACTATAGATCCTAGTCACACTAAAACAATTACTCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATTCTTAGTAACTATAGATCCTAGTCACACTAAAACAATTACTCT  692

seq1  AATTGCTGAATTTATGAAAGAATCCTCAATTTTTCTCATTTCCAGTGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGAATTTATGAAAGAATCCTCAATTTTTCTCATTTCCAGTGCTT  742

seq1  GCTGTTATTTTTAATTTTTCTCATCCTACATAATTTTTTCTTATAATCCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATTTTTAATTTTTCTCATCCTACATAATTTTTTCTTATAATCCT  792

seq1  CCATATTTTCCATAAGAAAGAATTTGGAAACTATATACAAAGTTTCATTG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTCCATAAGAAAGAATTTGGAAACTATATACAAAGTTTCATTG  842

seq1  CCCATTTCTTACTTGTAGGTATCTTGGGTTTAGTCCTCTGTACCTTAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTTACTTGTAGGTATCTTGGGTTTAGTCCTCTGTACCTTAATT  892

seq1  CATCATCTTCCCAGGAATTTATTTGCCACCTTCTACAGCAGATTCAGGCT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCTTCCCAGGAATTTATTTGCCACCTTCTACAGCAGATTCAGGCT  942

seq1  ATATGACACTGTGTGAGTGAAGTATGAAAGCAAAGAGTATGTATAACTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACACTGTGTGAGTGAAGTATGAAAGCAAAGAGTATGTATAACTTC  992

seq1  ACCTCACTTGCATAAGCAACACTTGCCTGGGTGATTTTTTTGTCTTTTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTTGCATAAGCAACACTTGCCTGGGTGATTTTTTTGTCTTTTCC  1042

seq1  TTTCCACTTCAATAATGGGTGACACACAGAGCAAATTGGGGAGCCACACA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACTTCAATAATGGGTGACACACAGAGCAAATTGGGGAGCCACACA  1092

seq1  TGAAACCTACCAGAGGAATTC  1116
      |||||||||||||||||||||
seq2  TGAAACCTACCAGAGGAATTC  1113