BAC Information

Click to search

BAC

Clone NameB6Ng01-286B15
Chromosome10 (Build37)
Map Location 27,301,626 - 27,461,576
singlet/doubletdoublet
Overlap geneLama2
Upstream geneLOC667572, LOC100040349, Arhgap18
Downstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk, E430004N04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286B15.bB6Ng01-286B15.g
ACCGA084382GA084383
length1,0921,120
definitionB6Ng01-286B15.b B6Ng01-286B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,460,483 - 27,461,576)(27,301,626 - 27,302,751)
sequence
gaattctttttcttagcctgaagtcttggctgcatattatctatctatat
ctgcactccactaacatgagcagagctgctgtcggttcctaaagcaaagg
tagtgtgacttcatttggttgttcacaaaaagatttttctctgctggtaa
aaccattgaaatgattgtttttgtatatgaatttttagaaacaaaataaa
attttataaggtatgactttgtctggaattacatcaaaagtgcattacat
tgcacatttgttgtaattgaaattttattttccattgtgtttcataatga
aagattacagatgtattaaaatattacccctccctctgccatgagaatgt
tcacagtttatttatttatttatttatttatttatttatttatttattta
tttttgagatatggttttaccaagttggccaggctgacctgaaactcaca
atcctcctgccgcctgaatgctaagattataggcatgtaaaaactatgtc
tgacttttatgtttattactattttactgcttttcattctattctctata
aagttttataaaataccatttcaagctatcataatttcatgcagttctag
tttcttagtttttctttactcaggaatgttctggttgaaagacagaggga
tcagttatagaaaaaacttcagagtacatggctacttatatttagtcctt
agtaggtgagcccaaatctctttatctctttcttttgcacttgttcaatt
atttgatagaaattttctaaaaagaatttcaccatattagtagacttcaa
aattttcttcttaaaattcaagcagatcttgtattttgcatttgagtcct
gagctgttagtgtgtagatgtccttttttctttttttctatttgtaagat
tgcttcttgggaaattacatgggaaacccttattcaatggtaattttata
gtaggatttttttttccctaacaaccatgtcaacattgcttcagcctctt
ctgttacatttcatgaaatatcccttaaacctcctattgttttaactctg
catgtttttgtctgagtacaatgctatactgctgaatataat

gaattcaaagtcctcaaaaggtgagaacctgtttcttgaaagagtgacat
aaatgcaagcatggcagctgtcatgctttcctctcattaaaagaaggatg
cttcaggcctaaggaaggtccttggtaggctacagtacagaaatgagagc
acatgacatacccatatagccaaaggaatcacagtggctgaaggttgggg
aaaatgaaagggcacatcacaggaaactttgtaaatataaggtagccata
taattgatcattcagtccaggtcactgttgagactaaatgggggcactgc
tattaatcaagctgggacagggactgtacaccaacattgctgtcagtgca
ctagcaagtctcaagttagcagagcttggactttgtactattgtcaaaca
gataaaccacagccttttatggagaggattttatttgggttttattttgt
ttccaggaaattgcctcttgctgaagtacaggaaacaaatgggagaaggc
taaattggaagcaagaagatccattcaaagaccattccgatgacttctgg
ctactgggataatggtagcctgatctgctgcaaaggttgggtaggctata
aggaaactgataagggactattaggttgacttacatgaaattgctggaat
ttcttgacctagagcatgtcaacttcataagactccccccgcaaggattt
taagaaaatagacttgtctggtcacaaatgttaaacatataattgttaca
tgagggcacaatgcatacactagcaagcgttggctgaaaggaccctgata
tacctgtctcttttgagactaggccggggcctagcaaacacataagtgga
tattcacagtcagctattggatggagcacagggcccccaatgggaggagc
tagagaaagtacccaaggagctaaagagatctgcaaccctgtaggtacaa
cacattatgaactaaccagtaccccggagctcttgactctagctgcatat
gtatcaagatggcctagtcggccattcactgaaagagaggtccaattgaa
cacacaaactttatattgcccaagttacagggtaatcaggtcaaaaatgg
ggatgggtgggtgtaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_27460483_27461576
seq2: B6Ng01-286B15.b_50_1141 (reverse)

seq1  ATTATATTCAGCAAGTATAAGCATTGTACCTCAGACAAAAACATGCAGAA  50
      |||||||||||| ||||| ||||||||| |||||||||||||||||||| 
seq2  ATTATATTCAGC-AGTAT-AGCATTGTA-CTCAGACAAAAACATGCAGA-  46

seq1  GTTTAAAAACATAGGA-GTTTAAGGGATATTTCATGAAATTGTAACAGAA  99
        ||||||  |||||| |||||||||||||||||||||| ||||||||||
seq2  -GTTAAAACAATAGGAGGTTTAAGGGATATTTCATGAAA-TGTAACAGAA  94

seq1  GAGGCTGAAGCAATGTTGACATGGTTGTTAGGG-AAAAAAAATCCTACTA  148
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGGCTGAAGCAATGTTGACATGGTTGTTAGGGAAAAAAAAATCCTACTA  144

seq1  T-AAATTACCATTGAATAAGG--TTTCCATGTAATTTCCCAAGAAGCAAT  195
      | |||||||||||||||||||  || ||||||||||||||||||||||||
seq2  TAAAATTACCATTGAATAAGGGTTTCCCATGTAATTTCCCAAGAAGCAAT  194

seq1  CTTACAAATAGAAAAAAAGAAAAAAGGACATCTACACACCTAACAGCTCA  245
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTTACAAATAGAAAAAAAGAAAAAAGGACATCTACACA-CTAACAGCTCA  243

seq1  GGACTCAAATGCAAAATACAAGATCTGCTTGAATTTTAAGAAGAAAATTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCAAATGCAAAATACAAGATCTGCTTGAATTTTAAGAAGAAAATTT  293

seq1  TGAAGTCTACTAATATGGTGAAATTCTTTTTAGAAAATTTCTATCAAATA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTACTAATATGGTGAAATTCTTTTTAGAAAATTTCTATCAAATA  343

seq1  ATTGAACAAGTGCAAAAGAAAGAGATAAAGAGATTTGGGCTCACCTACTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACAAGTGCAAAAGAAAGAGATAAAGAGATTTGGGCTCACCTACTA  393

seq1  AGGACTAAATATAAGTAGCCATGTACTCTGAAGTTTTTTCTATAACTGAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAAATATAAGTAGCCATGTACTCTGAAGTTTTTTCTATAACTGAT  443

seq1  CCCTCTGTCTTTCAACCAGAACATTCCTGAGTAAAGAAAAACTAAGAAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTCTTTCAACCAGAACATTCCTGAGTAAAGAAAAACTAAGAAAC  493

seq1  TAGAACTGCATGAAATTATGATAGCTTGAAATGGTATTTTATAAAACTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGCATGAAATTATGATAGCTTGAAATGGTATTTTATAAAACTTT  543

seq1  ATAGAGAATAGAATGAAAAGCAGTAAAATAGTAATAAACATAAAAGTCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAATAGAATGAAAAGCAGTAAAATAGTAATAAACATAAAAGTCAG  593

seq1  ACATAGTTTTTACATGCCTATAATCTTAGCATTCAGGCGGCAGGAGGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTTTTACATGCCTATAATCTTAGCATTCAGGCGGCAGGAGGATT  643

seq1  GTGAGTTTCAGGTCAGCCTGGCCAACTTGGTAAAACCATATCTCAAAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTTCAGGTCAGCCTGGCCAACTTGGTAAAACCATATCTCAAAAAT  693

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACTGTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAACTGTGAA  743

seq1  CATTCTCATGGCAGAGGGAGGGGTAATATTTTAATACATCTGTAATCTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATGGCAGAGGGAGGGGTAATATTTTAATACATCTGTAATCTTT  793

seq1  CATTATGAAACACAATGGAAAATAAAATTTCAATTACAACAAATGTGCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGAAACACAATGGAAAATAAAATTTCAATTACAACAAATGTGCAA  843

seq1  TGTAATGCACTTTTGATGTAATTCCAGACAAAGTCATACCTTATAAAATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGCACTTTTGATGTAATTCCAGACAAAGTCATACCTTATAAAATT  893

seq1  TTATTTTGTTTCTAAAAATTCATATACAAAAACAATCATTTCAATGGTTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTTCTAAAAATTCATATACAAAAACAATCATTTCAATGGTTT  943

seq1  TACCAGCAGAGAAAAATCTTTTTGTGAACAACCAAATGAAGTCACACTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGCAGAGAAAAATCTTTTTGTGAACAACCAAATGAAGTCACACTAC  993

seq1  CTTTGCTTTAGGAACCGACAGCAGCTCTGCTCATGTTAGTGGAGTGCAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCTTTAGGAACCGACAGCAGCTCTGCTCATGTTAGTGGAGTGCAGA  1043

seq1  TATAGATAGATAATATGCAGCCAAGACTTCAGGCTAAGAAAAAGAATTC  1094
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATAGATAATATGCAGCCAAGACTTCAGGCTAAGAAAAAGAATTC  1092


seq1: chr10_27301626_27302751
seq2: B6Ng01-286B15.g_69_1188

seq1  GAATTCAAAGTCCTCAAAAGGTGAGAACCTGTTTCTTGAAAGAGTGACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCCTCAAAAGGTGAGAACCTGTTTCTTGAAAGAGTGACAT  50

seq1  AAATGCAAGCATGGCAGCTGTCATGCTTTCCTCTCATTAAAAGAAGGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGCATGGCAGCTGTCATGCTTTCCTCTCATTAAAAGAAGGATG  100

seq1  CTTCAGGCCTAAGGAAGGTCCTTGGTAGGCTACAGTACAGAAATGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGCCTAAGGAAGGTCCTTGGTAGGCTACAGTACAGAAATGAGAGC  150

seq1  ACATGACATACCCATATAGCCAAAGGAATCACAGTGGCTGAAGGTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATACCCATATAGCCAAAGGAATCACAGTGGCTGAAGGTTGGGG  200

seq1  AAAATGAAAGGGCACATCACAGGAAACTTTGTAAATATAAGGTAGCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAAGGGCACATCACAGGAAACTTTGTAAATATAAGGTAGCCATA  250

seq1  TAATTGATCATTCAGTCCAGGTCACTGTTGAGACTAAATGGGGGCACTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATCATTCAGTCCAGGTCACTGTTGAGACTAAATGGGGGCACTGC  300

seq1  TATTAATCAAGCTGGGACAGGGACTGTACACCAACATTGCTGTCAGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATCAAGCTGGGACAGGGACTGTACACCAACATTGCTGTCAGTGCA  350

seq1  CTAGCAAGTCTCAAGTTAGCAGAGCTTGGACTTTGTACTATTGTCAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAAGTCTCAAGTTAGCAGAGCTTGGACTTTGTACTATTGTCAAACA  400

seq1  GATAAACCACAGCCTTTTATGGAGAGGATTTTATTTGGGTTTTATTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAACCACAGCCTTTTATGGAGAGGATTTTATTTGGGTTTTATTTTGT  450

seq1  TTCCAGGAAATTGCCTCTTGCTGAAGTACAGGAAACAAATGGGAGAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAATTGCCTCTTGCTGAAGTACAGGAAACAAATGGGAGAAGGC  500

seq1  TAAATTGGAAGCAAGAAGATCCATTCAAAGACCATTCCGATGACTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGAAGCAAGAAGATCCATTCAAAGACCATTCCGATGACTTCTGG  550

seq1  CTACTGGGATAATGGTAGCCTGATCTGCTGCAAAGGTTGGGTAGGCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGGGATAATGGTAGCCTGATCTGCTGCAAAGGTTGGGTAGGCTATA  600

seq1  AGGAAACTGATAAGGGACTATTAGGTTGACTTACATGAAATTGCTGGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGATAAGGGACTATTAGGTTGACTTACATGAAATTGCTGGAAT  650

seq1  TTCTTGACCTAGAGCATGTCAACTTCATAAGACTCCCCCCGCAAGGATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGACCTAGAGCATGTCAACTTCATAAGACTCCCCCCGCAAGGATTT  700

seq1  TAAGAAAATAGACTTGTCTGGTCACAAATGTTAAACATATAATTGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAATAGACTTGTCTGGTCACAAATGTTAAACATATAATTGTTACA  750

seq1  TGAGGGCACAATGCATACACTAGCAAGCGTTGGCTGAAAGGACCCTGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCACAATGCATACACTAGCAAGCGTTGGCTGAAAGGACCCTGATA  800

seq1  TACCTGTCTCTTTTGAGACTAGGCCGGGGCCTAGCAAACACATAAGTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCTCTTTTGAGACTAGGCCGGGGCCTAGCAAACACATAAGTGGA  850

seq1  TATTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAAT-GGAGGAGC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTCACAGTCAGCTATTGGATGGAGCACAGGGCCCCCAATGGGAGGAGC  900

seq1  TAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTACCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTACAA  950

seq1  CAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA  999
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA  999

seq1  TGTATCAAAAGATGGCCTAGTCGGCCA-TCACTGGAAAGAGAGG-CCCAT  1047
      ||||||  ||||||||||||||||||| ||||| |||||||||| || ||
seq2  TGTATC--AAGATGGCCTAGTCGGCCATTCACT-GAAAGAGAGGTCCAAT  1046

seq1  TGGACACACAAACTTTATA-TGCCCCAG-TACAGGGAAATACCAGGGCCA  1095
      || |||||||||||||||| ||||| || ||||||| |||  |||| |  
seq2  TGAACACACAAACTTTATATTGCCCAAGTTACAGGGTAAT--CAGGTC--  1092

seq1  AAAAATGGGAATGGGTGGGTAGGGTAGGGGG  1126
      ||||||||| ||||||||||   ||||||||
seq2  AAAAATGGGGATGGGTGGGT---GTAGGGGG  1120


| Home | SequenceCutter | Blast | Download |