BAC Information

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BAC

Clone NameB6Ng01-286E13
Chromosome10 (Build37)
Map Location 89,880,405 - 90,053,190
singlet/doubletdoublet
Overlap geneAnks1b
Upstream geneGas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, LOC100043039, LOC544719
Downstream geneApaf1, 1200009F10Rik, Slc25a3, Tmpo, LOC100041769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286E13.bB6Ng01-286E13.g
ACCGA084520GA084521
length1,0681,165
definitionB6Ng01-286E13.b B6Ng01-286E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,880,405 - 89,881,428)(90,052,014 - 90,053,190)
sequence
gaattccttaacagcttgtcatgttccattacccccttgtgaataaatat
attttcttcgatttttgaatacctaataactcgttttaaaaattgacatc
tttaaggtttaacttcattgattatgtatacgtggcacacacacatgctt
ctactgttggtgtttatgtggggctgtcgctgacttagcgacttttcaga
actattctctgaactgttgttatttgtcaagtatgcttgctggaatctct
tctactcattcattggctgatcaggttgtggtctcatggaagttgttgca
caagtgtgggaagtaagacaaattctcctggcatttgtagttgggctttc
tggacattagggttggcactgcactggctgctctggacagagcacagctc
agcttttggctttagtttttgttcacacagtctgaggccaattgaagggg
agtgttagggtctttgctggtcatttctgttcatatgccttgtgcatagg
tgtggccatctggacagctagaaaccataaagttttcacagctcttcctt
cctgagtatctgactccctaaccatttctctccagtattattgtttctta
tttttctcaattatttgtgctgttatttttctttaccttttttttttttt
ttggccaggaatagaggaggtggatagtggaaaatgacctctaaatctcg
cccactgtgtttcagccctcatctttcatgattgaacttgtttattataa
atctttggttcttttccagagtttaaaaatgatagctttttgttctactg
tttttagaatgttaggccttctagtttccatgtagagggacatgtaatag
ctccctgattttcttttcagcacctctgatctctttgtgcacatcttagg
ttggcttttgcacattcatgactcctggtcttcagatgtctcttggccta
gctacttaggaatacatttcctgtaggttattactgtggaataaactatg
tatataatgtggaggttccccccttcccctcccttctctctctctactct
ttcctctacttcctctct
gaattcaaatgaccttccacaatatctggcacatgaaagtggctatagag
caactatgccttcatttgcattcttggaacattctggagaaacctagttt
tattgttgaggagtcaagcattggtcctgggtgcagggacacagtgcagg
tatttgctttagtgattagggctcagtgattatctgcaaaaaacaaacaa
acaacaacaacacatggtctggtggacaggaagaacagtatattctaaag
gcatgagctattgagaacaggttttctctggctttgagataaaaccttag
tctgtaggatggtgggtgttctggttgatactgtgaacttgagacatgca
tatggcagcatttgtagactgggttaattgaaaaagaaagacctgctctg
tgattgacacaataccttggacttgaactctggacttaacaaaaggaaga
aagcaaactgagtatgaacattctctgttctcttcttccaaatcgcggat
gcaaagtatgtagttacttcatgctggccgttgccataatctcccccccc
cccattatatgattgattggactctcaaactatgagccaaaataaatgct
tccttcctcaagctgttttcctcaggcatttggccacagtaatgagaaca
tttactgacaccttctgtttgggagaggcacctaatgtaactggtaactt
catttttttatcagcactagctagaaatagccagctaatcagcctcagac
agatgttgtcttgctcatcattcttgctaccttggtatgtggagtgcatg
tgtgtgctgtcatcccggtaagcttatctagggacagtgataggtcagca
agctgtctctccacatggcgcatgtggagcacctgatccatgattttgca
aggcagggaaacattttcatgcaaagaagcatagtcaccctggaatattg
cctgactaggatccgctttggtttcaaatctaacagccacctggacatct
tacctcatttgttcagatttcatggtgttcaccccatttcttctgtgtct
acacaaacacctaacttcacacccatttcatcagagaccctttcctgaaa
tgcctcgagttcagacgtctctttctccgactagcatcagatacaacttt
attcttccgatagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_89880405_89881428
seq2: B6Ng01-286E13.b_42_1109

seq1  GAATTCCTTAACAGCTTGTCATGTTCCATTACCCCCTTGTGAATAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACAGCTTGTCATGTTCCATTACCCCCTTGTGAATAAATAT  50

seq1  ATTTTCTTCGATTTTTGAATACCTAATAACTCGTTTTAAAAATTGACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTCGATTTTTGAATACCTAATAACTCGTTTTAAAAATTGACATC  100

seq1  TTTAAGGTTTAACTTCATTGATTATGTATACGTGGCACACACACATGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGGTTTAACTTCATTGATTATGTATACGTGGCACACACACATGCTT  150

seq1  CTACTGTTGGTGTTTATGTGGGGCTGTCGCTGACTTAGCGACTTTTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTTGGTGTTTATGTGGGGCTGTCGCTGACTTAGCGACTTTTCAGA  200

seq1  ACTATTCTCTGAACTGTTGTTATTTGTCAAGTATGCTTGCTGGAATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTCTGAACTGTTGTTATTTGTCAAGTATGCTTGCTGGAATCTCT  250

seq1  TCTACTCATTCATTGGCTGATCAGGTTGTGGTCTCATGGAAGTTGTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCATTCATTGGCTGATCAGGTTGTGGTCTCATGGAAGTTGTTGCA  300

seq1  CAAGTGTGGGAAGTAAGACAAATTCTCCTGGCATTTGTAGTTGGGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGGAAGTAAGACAAATTCTCCTGGCATTTGTAGTTGGGCTTTC  350

seq1  TGGACATTAGGGTTGGCACTGCACTGGCTGCTCTGGACAGAGCACAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACATTAGGGTTGGCACTGCACTGGCTGCTCTGGACAGAGCACAGCTC  400

seq1  AGCTTTTGGCTTTAGTTTTTGTTCACACAGTCTGAGGCCAATTGAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGGCTTTAGTTTTTGTTCACACAGTCTGAGGCCAATTGAAGGGG  450

seq1  AGTGTTAGGGTCTTTGCTGGTCATTTCTGTTCATATGCCTTGTGCATAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGGGTCTTTGCTGGTCATTTCTGTTCATATGCCTTGTGCATAGG  500

seq1  TGTGGCCATCTGGACAGCTAGAAACCATAAAGTTTTCACAGCTCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATCTGGACAGCTAGAAACCATAAAGTTTTCACAGCTCTTCCTT  550

seq1  CCTGAGTATCTGACTCCCTAACCATTTCTCTCCAGTATTATTGTTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTATCTGACTCCCTAACCATTTCTCTCCAGTATTATTGTTTCTTA  600

seq1  TTTTTCTCAATTATTTGTGCTGTTATTTTTCTTTACCTTTTTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATTATTTGTGCTGTTATTTTTCTTTACCTTTTTTTTTTTTT  650

seq1  TTGGCCAGGAATAGAGGAGGTGGATAGTGGAAAATGACCTCTAAATCTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGGAATAGAGGAGGTGGATAGTGGAAAATGACCTCTAAATCTCG  700

seq1  CCCACTGTGTTTCAGCCCTCATCTTTCATGATTGAACTTGTTTATTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGTGTTTCAGCCCTCATCTTTCATGATTGAACTTGTTTATTATAA  750

seq1  ATCTTTGGTTCTTTTCCAGAGTTTAAAAATGATAGCTTTTTGTTCTACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGTTCTTTTCCAGAGTTTAAAAATGATAGCTTTTTGTTCTACTG  800

seq1  TTTTTAGAATGTTAGGCCTTCTAGTTTCCATGTAGAGGGACATGTAATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAATGTTAGGCCTTCTAGTTTCCATGTAGAGGGACATGTAATAG  850

seq1  CT-CCTGATTT--CTTTCAGCACCTCTGATCTCTTTGTGCACATCTTAGG  897
      || ||||||||   ||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGATTTTCTTTTCAGCACCTCTGATCTCTTTGTGCACATCTTAGG  900

seq1  TTGGCTTTTGCACATTCATGACTCCTGGTCTTCAGATGTCTCTT-GCCTA  946
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGGCTTTTGCACATTCATGACTCCTGGTCTTCAGATGTCTCTTGGCCTA  950

seq1  GCTACTTAAGAAATACATTTCCTGTA-GTTATAACTGT-GAAT-AACTAT  993
      ||||||| || ||||||||||||||| ||||| ||||| |||| ||||||
seq2  GCTACTT-AGGAATACATTTCCTGTAGGTTATTACTGTGGAATAAACTAT  999

seq1  GTATAT-ATGT-GAG----------TTCTCTCTCTTC-CTCTCT------  1024
      |||||| |||| |||          | | ||| |||| ||||||      
seq2  GTATATAATGTGGAGGTTCCCCCCTTCCCCTCCCTTCTCTCTCTCTACTC  1049

seq1  -------------------  1024
                         
seq2  TTTCCTCTACTTCCTCTCT  1068

seq1: chr10_90052014_90053190
seq2: B6Ng01-286E13.g_70_1234 (reverse)

seq1  AACTATCGGAAGAATAAATGTTGTAAATCTGTGAATGCCTATGTCTGGGA  50
      |||||||||||||||||| |||||  |||||   ||| ||| |||   | 
seq2  AACTATCGGAAGAATAAA-GTTGT--ATCTG---ATG-CTA-GTC---GG  39

seq1  AGGAAGAGCTGTCTGACATCTGGAGCA-TTCAGGGAAGGGTCTCTGATGG  99
      || |||||  ||||||  || |  ||| |||||| ||||||||||||| |
seq2  AGAAAGAGACGTCTGAACTC-GAGGCATTTCAGGAAAGGGTCTCTGAT-G  87

seq1  AAATGGGTGTG-AGT--AGTGTTTGTGTAGACACAGAAG-AATGGGGTGA  145
      ||||||||||| |||   ||||||||||||||||||||| ||||||||||
seq2  AAATGGGTGTGAAGTTAGGTGTTTGTGTAGACACAGAAGAAATGGGGTGA  137

seq1  ACA-CATGGAATCTTGAACAAATGAGGTTAAGATGTCCAGGTGCCTGTAG  194
      ||| |||| |||| ||||||||||||| ||||||||||||||| ||||  
seq2  ACACCATGAAATC-TGAACAAATGAGG-TAAGATGTCCAGGTGGCTGTTA  185

seq1  GATTTGAAAACCAAAGCGGATCCTAGTCAGGCAATTATTCCAGGGTTGAC  244
      |||||| ||||||||||||||||||||||||||| |||||||||| ||||
seq2  GATTTG-AAACCAAAGCGGATCCTAGTCAGGCAA-TATTCCAGGG-TGAC  232

seq1  TATTGCTTCTTTGCATGAAAATG-TTCCCTGCCTTGCAAAATCATGGATC  293
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TA-TGCTTCTTTGCATGAAAATGTTTCCCTGCCTTGCAAAATCATGGATC  281

seq1  AGGTGCTCCACATGCGCCATGTGGAGAGACAGCTTGCTGACCTATCACTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCCACATGCGCCATGTGGAGAGACAGCTTGCTGACCTATCACTG  331

seq1  TCCCTAGATAAGCTTACCGGGATGACAGCACACACATGCACTCCACATAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGATAAGCTTACCGGGATGACAGCACACACATGCACTCCACATAC  381

seq1  CAAGGTAGCAAGAATGATGAGCAAGACAACATCTGTCTGAGGCTGATTAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAGCAAGAATGATGAGCAAGACAACATCTGTCTGAGGCTGATTAG  431

seq1  CTGGCTATTTCTAGCTAGTGCTGATAAAAAAATGAAGTTACCAGTTACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTATTTCTAGCTAGTGCTGATAAAAAAATGAAGTTACCAGTTACAT  481

seq1  TAGGTGCCTCTCCCAAACAGAAGGTGTCAGTAAATGTTCTCATTACTGTG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCCTCTCCCAAACAGAAGGTGTCAGTAAATGTTCTCATTACTGTG  531

seq1  GCCAAATGCCTGAGGAAAACAGCTTGAGGAAGGAAGCATTTATTTTGGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATGCCTGAGGAAAACAGCTTGAGGAAGGAAGCATTTATTTTGGCT  581

seq1  CATAGTTTGAGAGTCCAATCAATCATATAATGGGGGGGGGGGAGATTATG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTTGAGAGTCCAATCAATCATATAATGGGGGGGGGGGAGATTATG  631

seq1  GCAACGGCCAGCATGAAGTAACTACATACTTTGCATCCGCGATTTGGAAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGGCCAGCATGAAGTAACTACATACTTTGCATCCGCGATTTGGAAG  681

seq1  AAGAGAACAGAGAATGTTCATACTCAGTTTGCTTTCTTCCTTTTGTTAAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACAGAGAATGTTCATACTCAGTTTGCTTTCTTCCTTTTGTTAAG  731

seq1  TCCAGAGTTCAAGTCCAAGGTATTGTGTCAATCACAGAGCAGGTCTTTCT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGTTCAAGTCCAAGGTATTGTGTCAATCACAGAGCAGGTCTTTCT  781

seq1  TTTTCAATTAACCCAGTCTACAAATGCTGCCATATGCATGTCTCAAGTTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTAACCCAGTCTACAAATGCTGCCATATGCATGTCTCAAGTTC  831

seq1  ACAGTATCAACCAGAACACCCACCATCCTACAGACTAAGGTTTTATCTCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCAACCAGAACACCCACCATCCTACAGACTAAGGTTTTATCTCA  881

seq1  AAGCCAGAGAAAACCTGTTCTCAATAGCTCATGCCTTTAGAATATACTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGAAAACCTGTTCTCAATAGCTCATGCCTTTAGAATATACTGT  931

seq1  TCTTCCTGTCCACCAGACCATGTGTTGTTGTTGTTTGTTTGTTTTTTGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTGTCCACCAGACCATGTGTTGTTGTTGTTTGTTTGTTTTTTGCA  981

seq1  GATAATCACTGAGCCCTAATCACTAAAGCAAATACCTGCACTGTGTCCCT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATCACTGAGCCCTAATCACTAAAGCAAATACCTGCACTGTGTCCCT  1031

seq1  GCACCCAGGACCAATGCTTGACTCCTCAACAATAAAACTAGGTTTCTCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCAGGACCAATGCTTGACTCCTCAACAATAAAACTAGGTTTCTCCA  1081

seq1  GAATGTTCCAAGAATGCAAATGAAGGCATAGTTGCTCTATAGCCACTTTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCCAAGAATGCAAATGAAGGCATAGTTGCTCTATAGCCACTTTC  1131

seq1  ATGTGCCAGATATTGTGGAAGGTCATTTGAATTC  1177
      ||||||||||||||||||||||||||||||||||
seq2  ATGTGCCAGATATTGTGGAAGGTCATTTGAATTC  1165