BAC Information

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BAC

Clone NameB6Ng01-287E06
Chromosome10 (Build37)11 (Build37)
Map Location 32,234,477 - 32,234,79970,113,806 - 70,114,153
singlet/doubletsingletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287E06.bB6Ng01-287E06.g
ACCGA085237GA085238
length990393
definitionB6Ng01-287E06.b B6Ng01-287E06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,234,477 - 32,234,799)(70,113,806 - 70,114,153)
sequence
gaattcttatcatacctcctttagtgatatctgcaatctcaaaaggaatt
ccagaaacattcagcattcctttacaaatgggccttagattacagtaagt
actaaatgattttttttttttttttggttctcagtgtgaatgtctttatt
tttgaagctatttaatggcaaaggaagtgagagcaaaatactgcttcata
ctacttaatcagtccttttcagatctgccttgactcaaagacttaattta
acatttattgtaagttacattttttttaattaggtattttcctcgtttac
atttccaatgctatcccaaaagtcccccatacccaccccccaatccccta
cccacccactcccgctttttggccctggcgttcccctgtactgggacata
taaagtttgcaagtccaaagggcctctctttccagtgatggctgactagg
ccatctcttgatacatatgcagctagagacaagagctccggggtactggt
tagttcatattgttgttccacattaccatagatggagaaaccaaagtatt
ccacgacaataccaaattcacacattatctttccaacaatccagcccttc
aaaggataataacagaaaaaaaaatacaaggacggaaatcatgccctaga
aaaagcaagaaagtaatccctcaacgaaacaaaaagaagactgccacaag
aaaagaatgccaactctaacaacaaaaataaaaggaagcaacaattactt
ttccttaatatctcttaatatcaatgaactcaattccccaataaaaagac
ataaactaacagactggctacacaaacaggacccaacattctgctgctta
caggaaacccatctcagggaaaaagacagacactacctcagagtgaaagg
ctggaaaatattttccaagcaaatggtctgaagaaacaagctggagtagc
cattctgtatcctaataaaatcgactttcaacccgaagtt
aggaaaggaaagttggaaggtgtgttaggattctttaaagaaatagaact
tacagaattaatatataaacagatgtacacacacatgcacaagcacatac
acatacataaagggaatttattagaacagcctacaggctgtgatctagtt
acttaccagttatagtctgtctaccaataaaaggcctaagaagccagtag
ttgttcagtcctcaaggctggatgtcttaattgttcttcagtatatgcca
gaatccagaagtaggctccaatgccaatgaagaaatagactagttagcaa
tgcaaaagagagcctgaaaagagcaaagcttccttcttccaagatgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_32234477_32234799
seq2: B6Ng01-287E06.b_153_562

seq1  TTTTTTTTTTTTTTG-----CAG-----------TAAATAGAGAATGGAT  34
      |||||||||||||||     |||           | | |   |||   ||
seq2  TTTTTTTTTTTTTTGGTTCTCAGTGTGAATGTCTTTATTTTTGAAGCTAT  50

seq1  TTAATGG---ATGTAG-----------------------CTATT------  52
      |||||||   | | ||                       ||| |      
seq2  TTAATGGCAAAGGAAGTGAGAGCAAAATACTGCTTCATACTACTTAATCA  100

seq1  ----TTTT---------------------------TTT---ATTTTTT--  66
          ||||                           |||   |||| ||  
seq2  GTCCTTTTCAGATCTGCCTTGACTCAAAGACTTAATTTAACATTTATTGT  150

seq1  ---TTCCATTTTTT---ATTAGGTATTAAGCTCATTTACATTTCCAATGC  110
         || ||||||||   ||||||||||   ||| ||||||||||||||||
seq2  AAGTTACATTTTTTTTAATTAGGTATTTTCCTCGTTTACATTTCCAATGC  200

seq1  TATACCAAAAGTCCCCCATATCCACCCACCCCCACTCCCCTGCCCACCCA  160
      ||| |||||||||||||||| ||||   |||||| |||||| ||||||||
seq2  TATCCCAAAAGTCCCCCATACCCAC---CCCCCAATCCCCTACCCACCCA  247

seq1  CTCCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTT  210
      ||||| |||||||||||||| |||||||||||||||| ||||||||||||
seq2  CTCCCGCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGACATATAAAGTTT  297

seq1  GCAAATCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  260
      |||| ||||| ||||||||||||||||||||||| ||||||||||||| |
seq2  GCAAGTCCAAAGGGCCTCTCTTTCCAGTGATGGCTGACTAGGCCATCTCT  347

seq1  TGATATATATGCAGCTAGAGTCAGGAGCTCCGGGGTACTGGTTAGTTCAT  310
      ||||| |||||||||||||| || ||||||||||||||||||||||||||
seq2  TGATACATATGCAGCTAGAGACAAGAGCTCCGGGGTACTGGTTAGTTCAT  397

seq1  AATGTTGTTCCAC  323
      | |||||||||||
seq2  ATTGTTGTTCCAC  410

seq1: chr11_70113806_70114153
seq2: B6Ng01-287E06.g_147_462 (reverse)

seq1  ATACACACACACACACACACACACACACACACACACACTAACAGGTAATA  50
      ||||||||||||||||||||||||||||||||||||||            
seq2  ATACACACACACACACACACACACACACACACACACAC------------  38

seq1  TACCTCCCCACACAAACACACACACAGGTAACAGAACACTGTTCCTTTAG  100
                     |||||||||||  |    ||| |  |   |||| |
seq2  ---------------ACACACACACA--TCTTGGAAGAAGGAAGCTTT-G  70

seq1  TTCTTTTCACATTTTGTATTACATT-TTAACTTATCT-TGTGTTCACATG  148
       ||||||||   | | | || ||||  |||||  ||| | | ||||   |
seq2  CTCTTTTCAGGCTCTCTTTTGCATTGCTAACTAGTCTATTTCTTCATTGG  120

seq1  CATGAGTGGAAGCTTGTGAGGGTGGGGACATGGTGCCACAGAGTGCCAGT  198
      |||   ||||  ||  |   ||       ||  || || | | ||  || 
seq2  CAT---TGGAGCCTACTTCTGG-------ATTCTGGCATATACTG-AAGA  159

seq1  TAAGGTCAGAGAACAAG--TTGAAGGAATCTCTTCTCTCTGTCCATCATG  246
        |  | ||| | | ||  ||| ||||           |||  || |   
seq2  ACAATTAAGACATCCAGCCTTG-AGGA-----------CTGAACAACTAC  197

seq1  TGGGTCCTGGGG------ATTG---AACTCAC-GTCCTTGGGCTTGAGTC  286
      ||| | ||  ||      ||||    ||  ||  |   |||   | ||| 
seq2  TGGCTTCTTAGGCCTTTTATTGGTAGACAGACTATAACTGG---TAAGT-  243

seq1  ATCT---TCCCAGCC------CACTTTTAGT---TCTCCTTTTTGTATGT  324
      | ||   || |||||      |  || || |   |  ||||| |||||||
seq2  AACTAGATCACAGCCTGTAGGCTGTTCTAATAAATTCCCTTTATGTATGT  293

seq1  GTATGTGTGTGTGCTCTGTGTGTG  348
      |||||||  |||||  ||||||||
seq2  GTATGTGCTTGTGC-ATGTGTGTG  316