BAC Information

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BAC

Clone NameB6Ng01-287J24
Chromosome10 (Build37)
Map Location 82,121,629 - 82,293,243
singlet/doubletdoublet
Overlap geneGlt8d2, Hcfc2, Nfyb, 1700028I16Rik
Upstream geneLOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg
Downstream geneTxnrd1, Eid3, EG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287J24.bB6Ng01-287J24.g
ACCGA085498GA085499
length1,1271,083
definitionB6Ng01-287J24.b B6Ng01-287J24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,121,629 - 82,122,741)(82,292,155 - 82,293,243)
sequence
gaattccacacccctaagccccttaccccataaaaacccctagcttttga
gccttgtggccgacatctgttatctcctgtgtgggatgcatgtcggtctg
gagctccgtcattaaactacctcatgtaattacatcagggtggtctattc
atgattctttgggtgcacgctgaatcgggaattgagtgggggtttcccca
ctaggttctatcactgtgtgtgtgcctggtgcccaaggaaactagaagag
ggcattggttcccctggaactggagttacattaagatgtgagtctcaatg
tactgggaaccaaacccctcctagcctgtggtgatgagtagtgttacagc
tacccctttagagcattctctacacattggacatctcacagcatcccatt
gtatctcacaaacacagaagagtagacagcgtctgtgccatgctgcagat
tagaaaagcgagactccacggggttacagaaattgtcctgagagggtgag
aaaatggaacccccataccgtccccatctcctggtagttcccactggctt
tggatgggtggatcatgataatttggacaaagggccagagaaaaaggata
aaagtgtgattctatgatggcatgcccacctgtagtcccacaagtcggtg
gatgtcttgagcagagggtaagtcacagtcgtctgaaaaggccgctgcat
ggcccagagccaaggtggtgtcatacagctcctggatatcgcctgcattt
gggaagtatcagcagatagaacacaagtatctcaggactagacagaacca
tcccttaattcctaacttcagtagagcaaaggtgcaaggctcctattttt
cccatggcattgcagtgttccctaagaacattttcagctggagagatggg
ctcagtgggttaaagagtactgtctgctcttccagaaggacccaagggtc
aattccaagcacaccacatggtagctcaacaactgtctgtacttcaagtt
tccaaggaatctgacatctcataccagtgcacataaaaataaagttaata
atcacttaaaaaaaaaaaaaaaaaggacctggccattggtgcacacacct
tatattcccagtcacttggtggagaga
gaattctcagggaaaaaaaataaaaatctataccatttaattttagaatc
ctaaagagccatggggtctgtatctgttatagatcggactgtagtatcct
ccatagctggtactgtaaggcaggcctgtcaacactcttatcaatactag
cgcagctccctggtcttctcacaaccttctgagacacaactgcaaggcac
ggagcccaagctcttgtgcgtgtacctatacttacacatttacatatatg
cattcatcttaaacatccaccggacattctcacctacactcttaatggag
aactgtcggaccagagcaacacacaggaccattccaccaacaacacatca
gaaactgtaatccaatctctggtgttcgttttctcctttccactcttatt
gttcgaaagacaacacagaaattaggattcccggtggcaacagttaggga
agatcatgggatgtcagcctgggagacttttggagtcagtaggccagcca
cgcccactgaggaagaatccgaggtcaaggcaggtaattagagtcagaat
tggctctacgattcgagctcctaattccattaagcttggctgactcctgc
ctctgatgactgactctacaggaaggtgatgatgatcctgccaaggcatt
catgccaaggacaccgcccaagcgaccattatctctggcacctgccgata
ctcagagcgcagcacaaagggatgtcacgagatcttctatgattaagaaa
agctgcggtctcacctgggagagactgtctaccaaaacaaaaggaaagca
aattcatggtggatacgcctcttatatgtctgtcacctctccataaatca
tgttattcaactggtcaaaatcactaggattttccctttaaaatttgcat
ataaacaatttttttgccatttgcttatcatttctgtttccagattttca
tccatcatgaaaaacatttctatgtattctttgaacattcacacacgtat
atacgtatcctgattatttttctttctcagtttgaataaatttccaagca
gcattcaaagaaatagataggtagatgtagagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_82121629_82122741
seq2: B6Ng01-287J24.b_46_1172

seq1  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCCTAAGCCCCTTACCCCATAAAAACCCCTAGCTTTTGA  50

seq1  GCCTTGTGGCCGACATCTGTTATCTCCTGTGTGGGATGCATGTCGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGGCCGACATCTGTTATCTCCTGTGTGGGATGCATGTCGGTCTG  100

seq1  GAGCTCCGTCATTAAACTACCTCATGTAATTACATCAGGGTGGTCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTCATTAAACTACCTCATGTAATTACATCAGGGTGGTCTATTC  150

seq1  ATGATTCTTTGGGTGCACGCTGAATCGGGAATTGAGTGGGGGTTTCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCTTTGGGTGCACGCTGAATCGGGAATTGAGTGGGGGTTTCCCCA  200

seq1  CTAGGTTCTATCACTGTGTGTGTGCCTGGTGCCCAAGGAAACTAGAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCTATCACTGTGTGTGTGCCTGGTGCCCAAGGAAACTAGAAGAG  250

seq1  GGCATTGGTTCCCCTGGAACTGGAGTTACATTAAGATGTGAGTCTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGGTTCCCCTGGAACTGGAGTTACATTAAGATGTGAGTCTCAATG  300

seq1  TACTGGGAACCAAACCCCTCCTAGCCTGTGGTGATGAGTAGTGTTACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGAACCAAACCCCTCCTAGCCTGTGGTGATGAGTAGTGTTACAGC  350

seq1  TACCCCTTTAGAGCATTCTCTACACATTGGACATCTCACAGCATCCCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTTAGAGCATTCTCTACACATTGGACATCTCACAGCATCCCATT  400

seq1  GTATCTCACAAACACAGAAGAGTAGACAGCGTCTGTGCCATGCTGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCACAAACACAGAAGAGTAGACAGCGTCTGTGCCATGCTGCAGAT  450

seq1  TAGAAAAGCGAGACTCCACGGGGTTACAGAAATTGTCCTGAGAGGGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGCGAGACTCCACGGGGTTACAGAAATTGTCCTGAGAGGGTGAG  500

seq1  AAAATGGAACCCCCATACCGTCCCCATCTCCTGGTAGTTCCCACTGGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAACCCCCATACCGTCCCCATCTCCTGGTAGTTCCCACTGGCTT  550

seq1  TGGATGGGTGGATCATGATAATTTGGACAAAGGGCCAGAGAAAAAGGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTGGATCATGATAATTTGGACAAAGGGCCAGAGAAAAAGGATA  600

seq1  AAAGTGTGATTCTATGATGGCATGCCCACCTGTAGTCCCACAAGTCGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTGATTCTATGATGGCATGCCCACCTGTAGTCCCACAAGTCGGTG  650

seq1  GATGTCTTGAGCAGAGGGTAAGTCACAGTCGTCTGAAAAGGCCGCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTTGAGCAGAGGGTAAGTCACAGTCGTCTGAAAAGGCCGCTGCAT  700

seq1  GGCCCAGAGCCAAGGTGGTGTCATACAGCTCCTGGATATCGCCTGCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGAGCCAAGGTGGTGTCATACAGCTCCTGGATATCGCCTGCATTT  750

seq1  -GGAAGTATCAGCAGATAGAACACAAGTATCTCAGGACTAGACAGAACCA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTATCAGCAGATAGAACACAAGTATCTCAGGACTAGACAGAACCA  800

seq1  TCCCTTAATTCCTAACTTCAGTAGAGCAAAGGTGCAAGGCTCCTA-TTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCCTTAATTCCTAACTTCAGTAGAGCAAAGGTGCAAGGCTCCTATTTTT  850

seq1  CCCATGGCATTGCAGTGTT-CCTAAGAACA-TTTCAGCTGGAGAGAT-GG  895
      ||||||||||||||||||| |||||||||| |||||||||||||||| ||
seq2  CCCATGGCATTGCAGTGTTCCCTAAGAACATTTTCAGCTGGAGAGATGGG  900

seq1  CTCAGT-GGTTTAAGAGTACTGTCTGCTCTTCCAG-AGGACCC-AGGTTC  942
      |||||| |||| ||||||||||||||||||||||| ||||||| ||| ||
seq2  CTCAGTGGGTTAAAGAGTACTGTCTGCTCTTCCAGAAGGACCCAAGGGTC  950

seq1  AATTCCCAGCAC-CCACATGGTAGCTC-ACAACTGTCTGTACCTCCAG-T  989
      |||||| ||||| |||||||||||||| |||||||||||||| || || |
seq2  AATTCCAAGCACACCACATGGTAGCTCAACAACTGTCTGTACTTCAAGTT  1000

seq1  TCCAAGGGATCTGACATCTTCATACCAGTGCACAT-AAAATAAAGTTAAA  1038
      ||||||| |||||||||| |||||||||||||||| ||||||||||||| 
seq2  TCCAAGGAATCTGACATC-TCATACCAGTGCACATAAAAATAAAGTTAA-  1048

seq1  TAAATCACTT-TAAAAAAAAAAAAAAAGGAGCTGGGCAGTGGTGCACACA  1087
        ||||||||  |||||||||||||||||| |||| || |||||||||||
seq2  -TAATCACTTAAAAAAAAAAAAAAAAAGGACCTGGCCATTGGTGCACACA  1097

seq1  CCTT-TAATCCCAG-CACTTG--GGAGAGA  1113
      |||| || |||||| ||||||  |||||||
seq2  CCTTATATTCCCAGTCACTTGGTGGAGAGA  1127

seq1: chr10_82292155_82293243
seq2: B6Ng01-287J24.g_67_1149 (reverse)

seq1  ACTCTAACATCTACTTAATCTATTTCTTTGAATGCTGCTTTGAATTTTAT  50
      ||||| |||||||| | ||||||||||||||||||||||| ||| |||| 
seq2  ACTCT-ACATCTACCT-ATCTATTTCTTTGAATGCTGCTTGGAAATTTA-  47

seq1  TTCAAACTGAGAAAG-AAAATAATCAGGATACGTTATATACGTGTGTGAA  99
      ||||||||||||||| ||||||||||||||||| |||||||||||||| |
seq2  TTCAAACTGAGAAAGAAAAATAATCAGGATACG-TATATACGTGTGTG-A  95

seq1  ATTGTCAAAGAATACATAGAAATTGTTTTTCATGATGGATGAAAAATCTG  149
      ||  |||||||||||||||||| |||||||||||||||||| ||||||||
seq2  ATGTTCAAAGAATACATAGAAA-TGTTTTTCATGATGGATG-AAAATCTG  143

seq1  GAAACAGAAATGATAAGCAAATGGCAAAAAAATTGTTTTATATGCAAATT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAAACAGAAATGATAAGCAAATGGCAAAAAAATTG-TTTATATGCAAATT  192

seq1  TT-AAGGGAAAATCCTAGTGATTTTGACCAGTTGAATAACATGATTTATG  248
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGGAAAATCCTAGTGATTTTGACCAGTTGAATAACATGATTTATG  242

seq1  GAGAGGTGACAGACATATAAGAGGCGTATCCACCATGAATTTGCTTTCCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTGACAGACATATAAGAGGCGTATCCACCATGAATTTGCTTTCCT  292

seq1  TTTGTTTTGGTAGACAGTCTCTCCCAGGTGAGACCGCAGCTTTTCTTAAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGGTAGACAGTCTCTCCCAGGTGAGACCGCAGCTTTTCTTAAT  342

seq1  CATAGAAGATCTCGTGACATCCCTTTGTGCTGCGCTCTGAGTATCGGCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAAGATCTCGTGACATCCCTTTGTGCTGCGCTCTGAGTATCGGCAG  392

seq1  GTGCCAGAGATAATGGTCGCTTGGGCGGTGTCCTTGGCATGAATGCCTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGAGATAATGGTCGCTTGGGCGGTGTCCTTGGCATGAATGCCTTG  442

seq1  GCAGGATCATCATCACCTTCCTGTAGAGTCAGTCATCAGAGGCAGGAGTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATCATCATCACCTTCCTGTAGAGTCAGTCATCAGAGGCAGGAGTC  492

seq1  AGCCAAGCTTAATGGAATTAGGAGCTCGAATCGTAGAGCCAATTCTGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCTTAATGGAATTAGGAGCTCGAATCGTAGAGCCAATTCTGACT  542

seq1  CTAATTACCTGCCTTGACCTCGGATTCTTCCTCAGTGGGCGTGGCTGGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACCTGCCTTGACCTCGGATTCTTCCTCAGTGGGCGTGGCTGGCC  592

seq1  TACTGACTCCAAAAGTCTCCCAGGCTGACATCCCATGATCTTCCCTAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACTCCAAAAGTCTCCCAGGCTGACATCCCATGATCTTCCCTAACT  642

seq1  GTTGCCACCGGGAATCCTAATTTCTGTGTTGTCTTTCGAACAATAAGAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCACCGGGAATCCTAATTTCTGTGTTGTCTTTCGAACAATAAGAGT  692

seq1  GGAAAGGAGAAAACGAACACCAGAGATTGGATTACAGTTTCTGATGTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAAAACGAACACCAGAGATTGGATTACAGTTTCTGATGTGTT  742

seq1  GTTGGTGGAATGGTCCTGTGTGTTGCTCTGGTCCGACAGTTCTCCATTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGGAATGGTCCTGTGTGTTGCTCTGGTCCGACAGTTCTCCATTAA  792

seq1  GAGTGTAGGTGAGAATGTCCGGTGGATGTTTAAGATGAATGCATATATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTAGGTGAGAATGTCCGGTGGATGTTTAAGATGAATGCATATATGT  842

seq1  AAATGTGTAAGTATAGGTACACGCACAAGAGCTTGGGCTCCGTGCCTTGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTAAGTATAGGTACACGCACAAGAGCTTGGGCTCCGTGCCTTGC  892

seq1  AGTTGTGTCTCAGAAGGTTGTGAGAAGACCAGGGAGCTGCGCTAGTATTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGTCTCAGAAGGTTGTGAGAAGACCAGGGAGCTGCGCTAGTATTG  942

seq1  ATAAGAGTGTTGACAGGCCTGCCTTACAGTACCAGCTATGGAGGATACTA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTGTTGACAGGCCTGCCTTACAGTACCAGCTATGGAGGATACTA  992

seq1  CAGTCCGATCTATAACAGATACAGACCCCATGGCTCTTTAGGATTCTAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCGATCTATAACAGATACAGACCCCATGGCTCTTTAGGATTCTAAA  1042

seq1  ATTAAATGGTATAGATTTTTATTTTTTTTCCCTGAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGGTATAGATTTTTATTTTTTTTCCCTGAGAATTC  1083