BAC Information

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BAC

Clone NameB6Ng01-287N09
Chromosome9 (Build37)10 (Build37)
Map Location 92,296,714 - 92,297,02760,199,787 - 60,200,944
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850
Downstream genePlscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287N09.bB6Ng01-287N09.g
ACCGA085653GA085654
length9191,166
definitionB6Ng01-287N09.b B6Ng01-287N09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(92,296,714 - 92,297,027)(60,199,787 - 60,200,944)
sequence
gaattctctatgtagaaccgcctagtccccaagattagagatatgcctgc
ctgtgcctcctaagtgctagggttaaagccgtacatcactacgcccagct
cgaagggggtactttcccaatgtaattaagtttactaattgtttggcctt
aaaaaggaatgattatactaaattacattggctgaggaataaattactct
agtgtaattacatgagtctctaaaagcaaagatgtctggggcaggagaga
tggctcagcagttaagggcacttgatgttcttggagaggacctgagttaa
gttcccagcatccgcatgtagcttcacaaccacccgttaacgccagttca
agggaattcaacgccctcttctggaccctgaggacacctgggtacatgta
ctgcacagaaacgtacggaggtgcacacatatatacagggctaaggtaaa
taagtcctttttaagtacaaatgttgtgaagggagatcaggagattttag
acatatgataaaacatgtattatatgtgttttatgtattataggatgaat
cactgctttgaggttggttaggacaccatgccaggaatgagggcaatctc
aggaagctatgaacagtcctagctggcagaaaccacagaaatgagggccc
tgaggcgagagcaataagaactgaggttgtgccaggtggtggtggcacac
acctttaatcccagcacttgggaggcagaggcaggcagatctctgtaatt
ttgaggctagcctgatctacagtgtttgaggacagccagggctgcacaga
gaaacaatgttataataaaatatataaatatatataaaacttttctttaa
ctaaactctgtaactatggggaattattttctttacatagttgcacacac
aaattatgtgtgtgtgtgt

gaattcaaaagcctagcggagccagccggccagatgtgaggccattttcc
agcagagaacttcctccagccacctcgctgagaggccccgtgctaaagct
gctcttctggaagaatctgattctgggctcagggtccaggtaagaaggtt
tctctgggcagggaggccctgaaatgagcctgtttatctctggcaggcct
tgggtaaaattctctcctcggaatgccatttgggccctttgatataagca
gagtacattagtcacgagcctcagcggcctcggaatctgaaactactgtc
accaaacagttctgcgttgccccccccacctcaggtctgcagtggaggag
gcagctgggctcctgcagggtaaggaaagtgattccagcccggggatggt
agctcagggcggcagagcgttacctggatcacagggccatgaaattagca
gcagtgagcgggctgcagccaagaacgattggccatgcaggctcctgcct
tcagctgtctggttccacggcctggggtgttaaggatgcaccctcatcct
ggaacagcccactcccatctggacaagttgagaggtaaacagagggaaga
cagtggcttcctgtgctcctgaggtcccatggaggggacatgggactggg
acatgcttggtggctgtgccacttccaagtggggttgagggggctgggga
ggggtccagaggagagatgggaaagcctcaaaaaactgcagccagccata
tgtcaccataggtccctaaggatggggaggcccaatcaaatggttccctc
agccctggaaactttgaccccttgggctatcttgggctatgaagatagcc
ccaaggtcaacatgaactgagactaaatctgtttctccaaagagcaaggg
cttccctagcctcttgtccctgtccatactttattagtttctttcgagac
gatcagcagagcctccccagtctctggaagggccctacttttccctgtct
tgcatggaaggcagagccacttctttctttcctttcccaccagacgggag
cactcttctgctccccatcactgtactctcttcccttgctgccgagccat
ttgcacaagaacgctggatactcattaacttgtttgcttgatcctccttc
ttgtggtcaagagctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92296714_92297027
seq2: B6Ng01-287N09.b_740_965 (reverse)

seq1  ACACACACACACATGCACAGCAGAAAAAAACATAATGGTTATAT-TACAA  49
        ||||||||||                 |||||||  || | | | |||
seq2  --ACACACACAC-----------------ACATAAT--TTGTGTGTGCAA  29

seq1  GTTTTTTTTTCCCAGAAGGAAAATAATTTTATGGTTTTATCGGCTA-TTT  98
       | | |         || ||||||||||            |   || || 
seq2  CTATGT---------AAAGAAAATAATT-----------CCCCATAGTTA  59

seq1  CAGATAATTATTTCTTTATGAATAAAATAAAATTTCATAAGTGTTTCTTA  148
      ||||          ||||    ||||  ||| ||| |||         ||
seq2  CAGA---------GTTTA--GTTAAAGAAAAGTTTTATA---------TA  89

seq1  GTTTTTTTTGTTTTGTTTTGTTTTTTGTTTTTTGGGTTTTTTTCAAAGCA  198
        ||| | | |||| ||                           | | ||
seq2  TATTTATATATTTTATT---------------------------ATAACA  112

seq1  GGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTCGTAGACCAG  248
        ||||||||||| |||||||||||||||  ||  ||||  ||||| |||
seq2  TTGTTTCTCTGTGCAGCCCTGGCTGTCCTCAAA--CACT--GTAGATCAG  158

seq1  GCTGGCCTCAAACT--CAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTG  296
      ||| |||||||| |  |||| |||||||||||||||||||||||||||||
seq2  GCTAGCCTCAAAATTACAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTG  208

seq1  GGATTAAAGGTGTGTGCC  314
      ||||||||||||||||||
seq2  GGATTAAAGGTGTGTGCC  226


seq1: chr10_60199787_60200944
seq2: B6Ng01-287N09.g_66_1231

seq1  GAATTCAAAAGCCTAGCGGAGCCAGCCGGCCAGATGTGAGGCCATTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGCCTAGCGGAGCCAGCCGGCCAGATGTGAGGCCATTTTCC  50

seq1  AGCAGAGAACTTCCTCCAGCCACCTCGCTGAGAGGCCCCGTGCTAAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGAACTTCCTCCAGCCACCTCGCTGAGAGGCCCCGTGCTAAAGCT  100

seq1  GCTCTTCTGGAAGAATCTGATTCTGGGCTCAGGGTCCAGGTAAGAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCTGGAAGAATCTGATTCTGGGCTCAGGGTCCAGGTAAGAAGGTT  150

seq1  TCTCTGGGCAGGGAGGCCCTGAAATGAGCCTGTTTATCTCTGGCAGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGCAGGGAGGCCCTGAAATGAGCCTGTTTATCTCTGGCAGGCCT  200

seq1  TGGGTAAAATTCTCTCCTCGGAATGCCATTTGGGCCCTTTGATATAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAAATTCTCTCCTCGGAATGCCATTTGGGCCCTTTGATATAAGCA  250

seq1  GAGTACATTAGTCACGAGCCTCAGCGGCCTCGGAATCTGAAACTACTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACATTAGTCACGAGCCTCAGCGGCCTCGGAATCTGAAACTACTGTC  300

seq1  ACCAAACAGTTCTGCGTTGCCCCCCCCACCTCAGGTCTGCAGTGGAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGTTCTGCGTTGCCCCCCCCACCTCAGGTCTGCAGTGGAGGAG  350

seq1  GCAGCTGGGCTCCTGCAGGGTAAGGAAAGTGATTCCAGCCCGGGGATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGGCTCCTGCAGGGTAAGGAAAGTGATTCCAGCCCGGGGATGGT  400

seq1  AGCTCAGGGCGGCAGAGCGTTACCTGGATCACAGGGCCATGAAATTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGGCGGCAGAGCGTTACCTGGATCACAGGGCCATGAAATTAGCA  450

seq1  GCAGTGAGCGGGCTGCAGCCAAGAACGATTGGCCATGCAGGCTCCTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGCGGGCTGCAGCCAAGAACGATTGGCCATGCAGGCTCCTGCCT  500

seq1  TCAGCTGTCTGGTTCCACGGCCTGGGGTGTTAAGGATGCACCCTCATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTCTGGTTCCACGGCCTGGGGTGTTAAGGATGCACCCTCATCCT  550

seq1  GGAACAGCCCACTCCCATCTGGACAAGTTGAGAGGTAAACAGAGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCCCACTCCCATCTGGACAAGTTGAGAGGTAAACAGAGGGAAGA  600

seq1  CAGTGGCTTCCTGTGCTCCTGAGGTCCCATGGAGGGGACATGGGACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTTCCTGTGCTCCTGAGGTCCCATGGAGGGGACATGGGACTGGG  650

seq1  ACATGCTTGGTGGCTGTGCCACTTCCAAGTGGGGTTGAGGGGGCTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTGGTGGCTGTGCCACTTCCAAGTGGGGTTGAGGGGGCTGGGGA  700

seq1  GGGGTCCAGAGGAGAGATGGGAAAGCCTCAAAAAACTGCAGCCAGCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCAGAGGAGAGATGGGAAAGCCTCAAAAAACTGCAGCCAGCCATA  750

seq1  TGTCACCATAGGTCCCTAAGGATGGGGAGGCCCAATCAAATGGTTCCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCATAGGTCCCTAAGGATGGGGAGGCCCAATCAAATGGTTCCCTC  800

seq1  AGCCCTGGAAACCTTGACCCCTTGGGCTATCTTGGGCTATGAAGATAG-C  849
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  AGCCCTGGAAACTTTGACCCCTTGGGCTATCTTGGGCTATGAAGATAGCC  850

seq1  CCAAGGTCAACATGAACTGAGACTAAATCTG-TTCTCCAAAGAGCAA-GG  897
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CCAAGGTCAACATGAACTGAGACTAAATCTGTTTCTCCAAAGAGCAAGGG  900

seq1  CTTCCCTAGCCTC-TGTCCCTGTCCATACTTTA-TAG-TTCCTTCCAGAC  944
      ||||||||||||| ||||||||||||||||||| ||| ||| ||| ||||
seq2  CTTCCCTAGCCTCTTGTCCCTGTCCATACTTTATTAGTTTCTTTCGAGAC  950

seq1  GATCAGCAGAG-CTCCCCAGTCTCCTGGAA-GGCCCTAC-TTTCCCTGTC  991
      ||||||||||| ||||||||||| |||||| |||||||| ||||||||||
seq2  GATCAGCAGAGCCTCCCCAGTCT-CTGGAAGGGCCCTACTTTTCCCTGTC  999

seq1  -TGCATGG-AGGCAGGAGCACTTCTT--CTTCCCTCCCCACCAGAAGGGG  1037
       ||||||| ||||||   ||||||||   |||| | |||||||| | |||
seq2  TTGCATGGAAGGCAGAGCCACTTCTTTCTTTCCTTTCCCACCAG-ACGGG  1048

seq1  AGCACTCCTTCTTCCCTCCCCATCACTGT-CTCTCTTCCCTCTGCTGCCG  1086
      |||||| |||||   |||||||||||||| ||||||||||| ||||||||
seq2  AGCACT-CTTCT--GCTCCCCATCACTGTACTCTCTTCCCT-TGCTGCCG  1094

seq1  AGCCA-TTGCACAAGACCGCCTGACTCCCAATTTC-TGTTGGCTGGCTCT  1134
      ||||| |||||||||| |||  ||  | || |  | |||| ||| | || 
seq2  AGCCATTTGCACAAGAACGCTGGATACTCATTAACTTGTTTGCTTGATCC  1144

seq1  TCCTTCTCTGTGGGTCAAGAGCTT  1158
      ||||||| ||| ||||||||||||
seq2  TCCTTCT-TGT-GGTCAAGAGCTT  1166


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