BAC Information

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BAC

Clone NameB6Ng01-288H03
Chromosome10 (Build37)
Map Location 21,524,507 - 21,672,962
singlet/doubletdoublet
Overlap geneLOC628133
Upstream geneLOC667202, Ahi1, Myb, LOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936
Downstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288H03.bB6Ng01-288H03.g
ACCGA086106GA086107
length7981,097
definitionB6Ng01-288H03.b B6Ng01-288H03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,524,507 - 21,525,304)(21,671,871 - 21,672,962)
sequence
gaattcatccctttgagaagacagaaccaagagaccctccttagtaattg
caacacaagcaatcacctgcttctatttctccatgagcagccagaaagga
ctattttagtgttttctgctgaagacctctaccatggtttggctcttcct
tagttatattgttttagttgggtgatgctcttacagtataaggttaaccg
ttatatagtataaagttcactagtccttggtacagtcagtgctgtcacca
gcaccagagtgtcatcacccataaagaagtagctccaccccttaggctaa
caccctgaactgctccaatcccagactctggtctctggaatcatcacagt
tccaggacagccagggctacagagaaaccctgtcttgaaaaaacaaacaa
acaaacaaaaaaattgattgcttaaagcggcttactacttacagaacttg
attggcaatgttcccaccccttaaccctgggaacagtagaggcgattgag
atcaactaacaaatacggaacttttcaggcctctggccaaccagtctgac
atcttcagacttggagctttttccagagctttctccagtcctagtgaata
cattcattctgatcgactggctgagataggagaagatgccccttgcgggt
gcaagagaggtgcatagggtagttgagcaacaggagggctggggtgatgt
tttaagctagaacaaagcaagttttgatgtagttgaaggaaggaggaaag
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaagg
gaattcacagtttgtttttttttttttttcctaaaatcaaagtgcattgt
acttactaacgaacaaaatgaattaacttgtcaaatggaaacagtataat
tgaactagggacaagtttggcgaattaagaaaggagaagccttgaaccct
gggactcaggattgagtccctgacaggtgttcatcaatgccttatccaca
gtcatctacttaaaatttaaacattttaaaaccccacacggcgcttattt
tgcagatcaaaatcagaagtgaacaatgatcaaatacattataagtgtgc
ctacccatggttatgaagtctaaaggctgactctgcagggagggagctgc
ctcctcctagctgttgagctacagaagtgagcacatctggatccctagtg
atcccaggagctttgggtgttgggaggcagccatctggtacaaaggaaat
ctggacagagtgtcccacccaaaagaaagcactgtattgtgctgctatga
aaagcaaccactacacttccctctgataaaacatcagcctctcagctggt
aaaggattcaaagaaatacatgtgcaaaagtgttcactggctgaccaagg
ttccaaaaccaccaccgacctgcagataagaaacacgaaatcaattactt
tcggaaactgcctaggaacagcatgctgccttcattttaaaatgctgctc
tttttataatttctgttggttatggacttctcctgaccttaggtgtctgg
ttggtttttaatccaaaatgaaaaggctggacaccttgaaaaatgtgagt
cctttctagtcttcttatctcatctgtgtggaattcaatggaaatgtaaa
atgtttttttttttatttttcggtctctatatatgaatatgtgaaatatg
ggaattgattatgatgggatttaatatacaatttatgcattgatgagaag
taaaattgcagcacttagataaagccagtttcaaggctaccctcagccta
ttgacttcagaccatcttgagcttacatgaccaggccctcagccccctcc
ccaacattcttttttaatattcatttttatgttctaagattaagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_21524507_21525304
seq2: B6Ng01-288H03.b_47_844

seq1  GAATTCATCCCTTTGAGAAGACAGAACCAAGAGACCCTCCTTAGTAATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTTTGAGAAGACAGAACCAAGAGACCCTCCTTAGTAATTG  50

seq1  CAACACAAGCAATCACCTGCTTCTATTTCTCCATGAGCAGCCAGAAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAAGCAATCACCTGCTTCTATTTCTCCATGAGCAGCCAGAAAGGA  100

seq1  CTATTTTAGTGTTTTCTGCTGAAGACCTCTACCATGGTTTGGCTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTAGTGTTTTCTGCTGAAGACCTCTACCATGGTTTGGCTCTTCCT  150

seq1  TAGTTATATTGTTTTAGTTGGGTGATGCTCTTACAGTATAAGGTTAACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATATTGTTTTAGTTGGGTGATGCTCTTACAGTATAAGGTTAACCG  200

seq1  TTATATAGTATAAAGTTCACTAGTCCTTGGTACAGTCAGTGCTGTCACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGTATAAAGTTCACTAGTCCTTGGTACAGTCAGTGCTGTCACCA  250

seq1  GCACCAGAGTGTCATCACCCATAAAGAAGTAGCTCCACCCCTTAGGCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGAGTGTCATCACCCATAAAGAAGTAGCTCCACCCCTTAGGCTAA  300

seq1  CACCCTGAACTGCTCCAATCCCAGACTCTGGTCTCTGGAATCATCACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAACTGCTCCAATCCCAGACTCTGGTCTCTGGAATCATCACAGT  350

seq1  TCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTTGAAAAAACAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTACAGAGAAACCCTGTCTTGAAAAAACAAACAA  400

seq1  ACAAACAAAAAAATTGATTGCTTAAAGCGGCTTACTACTTACAGAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAAATTGATTGCTTAAAGCGGCTTACTACTTACAGAACTTG  450

seq1  ATTGGCAATGTTCCCACCCCTTAACCCTGGGAACAGTAGAGGCGATTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAATGTTCCCACCCCTTAACCCTGGGAACAGTAGAGGCGATTGAG  500

seq1  ATCAACTAACAAATACGGAACTTTTCAGGCCTCTGGCCAACCAGTCTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTAACAAATACGGAACTTTTCAGGCCTCTGGCCAACCAGTCTGAC  550

seq1  ATCTTCAGACTTGGAGCTTTTTCCAGAGCTTTCTCCAGTCCTAGTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAGACTTGGAGCTTTTTCCAGAGCTTTCTCCAGTCCTAGTGAATA  600

seq1  CATTCATTCTGATCGACTGGCTGAGATAGGAGAAGATGCCCCTTGCGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCTGATCGACTGGCTGAGATAGGAGAAGATGCCCCTTGCGGGT  650

seq1  GCAAGAGAGGTGCATAGGGTAGTTGAGCAACAGGAGGGCTGGGGTGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGAGGTGCATAGGGTAGTTGAGCAACAGGAGGGCTGGGGTGATGT  700

seq1  TTTAAGCTAGAACAAAGCAAGTTTTGATGTAGTTGAAGGAAGGAGGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTAGAACAAAGCAAGTTTTGATGTAGTTGAAGGAAGGAGGAAAG  750

seq1  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGG  798

seq1: chr10_21671871_21672962
seq2: B6Ng01-288H03.g_68_1164 (reverse)

seq1  AAACTTAATCTTTAGAACATTAAAAATG-ATATTTAAAAAGAAATGTTGG  49
      |||||||||| |||||||| |||||||| ||||| |||||| ||||||||
seq2  AAACTTAATC-TTAGAACA-TAAAAATGAATATTAAAAAAG-AATGTTGG  47

seq1  GGAGGGGGCTGAGGGGCT-GTCATGT-AGCTC-AGATGGTCTGGAAGTCA  96
      ||||||||||||||| || ||||||| ||||| ||||||||| |||||||
seq2  GGAGGGGGCTGAGGGCCTGGTCATGTAAGCTCAAGATGGTCT-GAAGTCA  96

seq1  ATA-GCTGAGGGTAGCCTTG-AACTGGCTTTCCTTCTAAGTGCTGC-ATT  143
      ||| |||||||||||||||| ||||||||||   |||||||||||| |||
seq2  ATAGGCTGAGGGTAGCCTTGAAACTGGCTTT--ATCTAAGTGCTGCAATT  144

seq1  TTACTTTCTCATCAATGCAT-AATTGTATATTAA--TCCATCATTATCAA  190
      |||| ||||||||||||||| |||||||||||||   ||||||| |||||
seq2  TTAC-TTCTCATCAATGCATAAATTGTATATTAAATCCCATCATAATCAA  193

seq1  TT-CCATATTTCACATATTCATATATAGAGACCGAAAAAT-AAAAAAAAA  238
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCCCATATTTCACATATTCATATATAGAGACCGAAAAATAAAAAAAAAA  243

seq1  ACATTTTACATTTCCATTGAATTCCACACAGATGAGATAAGAAGACTAGA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTACATTTCCATTGAATTCCACACAGATGAGATAAGAAGACTAGA  293

seq1  AAGGACTCACATTTTTCAAGGTGTCCAGCCTTTTCATTTTGGATTAAAAA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTCACATTTTTCAAGGTGTCCAGCCTTTTCATTTTGGATTAAAAA  343

seq1  CCAACCAGACACCTAAGGTCAGGAGAAGTCCATAACCAACAGAAATTATA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCAGACACCTAAGGTCAGGAGAAGTCCATAACCAACAGAAATTATA  393

seq1  AAAAGAGCAGCATTTTAAAATGAAGGCAGCATGCTGTTCCTAGGCAGTTT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAGCATTTTAAAATGAAGGCAGCATGCTGTTCCTAGGCAGTTT  443

seq1  CCGAAAGTAATTGATTTCGTGTTTCTTATCTGCAGGTCGGTGGTGGTTTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAAGTAATTGATTTCGTGTTTCTTATCTGCAGGTCGGTGGTGGTTTT  493

seq1  GGAACCTTGGTCAGCCAGTGAACACTTTTGCACATGTATTTCTTTGAATC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTGGTCAGCCAGTGAACACTTTTGCACATGTATTTCTTTGAATC  543

seq1  CTTTACCAGCTGAGAGGCTGATGTTTTATCAGAGGGAAGTGTAGTGGTTG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAGCTGAGAGGCTGATGTTTTATCAGAGGGAAGTGTAGTGGTTG  593

seq1  CTTTTCATAGCAGCACAATACAGTGCTTTCTTTTGGGTGGGACACTCTGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATAGCAGCACAATACAGTGCTTTCTTTTGGGTGGGACACTCTGT  643

seq1  CCAGATTTCCTTTGTACCAGATGGCTGCCTCCCAACACCCAAAGCTCCTG  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTCCTTTGTACCAGATGGCTGCCTCCCAACACCCAAAGCTCCTG  693

seq1  GGATCACTAGGGATCCAGATGTGCTCACTTCTGTAGCTCAACAGCTAGGA  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACTAGGGATCCAGATGTGCTCACTTCTGTAGCTCAACAGCTAGGA  743

seq1  GGAGGCAGCTCCCTCCCTGCAGAGTCAGCCTTTAGACTTCATAACCATGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGCTCCCTCCCTGCAGAGTCAGCCTTTAGACTTCATAACCATGG  793

seq1  GTAGGCACACTTATAATGTATTTGATCATTGTTCACTTCTGATTTTGATC  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCACACTTATAATGTATTTGATCATTGTTCACTTCTGATTTTGATC  843

seq1  TGCAAAATAAGCGCCGTGTGGGGTTTTAAAATGTTTAAATTTTAAGTAGA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAATAAGCGCCGTGTGGGGTTTTAAAATGTTTAAATTTTAAGTAGA  893

seq1  TGACTGTGGATAAGGCATTGATGAACACCTGTCAGGGACTCAATCCTGAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGGATAAGGCATTGATGAACACCTGTCAGGGACTCAATCCTGAG  943

seq1  TCCCAGGGTTCAAGGCTTCTCCTTTCTTAATTCGCCAAACTTGTCCCTAG  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGTTCAAGGCTTCTCCTTTCTTAATTCGCCAAACTTGTCCCTAG  993

seq1  TTCAATTATACTGTTTCCATTTGACAAGTTAATTCATTTTGTTCGTTAGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTATACTGTTTCCATTTGACAAGTTAATTCATTTTGTTCGTTAGT  1043

seq1  AAGTACAATGCACTTTGATTTTAGGAAAAAAAAAAAAAAACAAACTGTGA  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAATGCACTTTGATTTTAGGAAAAAAAAAAAAAAACAAACTGTGA  1093

seq1  ATTC  1092
      ||||
seq2  ATTC  1097