BAC Information

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BAC

Clone NameB6Ng01-289A09
Chromosome10 (Build37)
Map Location 61,854,300 - 62,053,055
singlet/doubletdoublet
Overlap geneHkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21
Upstream geneNodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik
Downstream geneDdx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289A09.bB6Ng01-289A09.g
ACCGA086534GA086535
length1,150932
definitionB6Ng01-289A09.b B6Ng01-289A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,854,300 - 61,855,456)(62,052,139 - 62,053,055)
sequence
gaattcatggttcacagtggcctcggaggctctctctacagttgtcaaag
aaacataacacagagaacagggtgaagtgaaagaggtagacctcagagcc
atgtgggagccaagcccagcttcccacatcctgtcatggcatgcacctct
actgtaaggtttacctgtaaactgagagcaaagcagcattctaagggccg
caggaggcagggttagcctctgccagccaggaatgaacattgccaaagag
ggagagggaccatcaataaccatcgggtccttgtccaagcctctgcctag
acaatgttctcagcgaaacgtatccttgagcctgatcttagcacatttct
gaggtgctcagcctctacttgcttgtttgccatcgtgataaatctcagct
tcccctcggtttatatattataaacccaagcttaactgggacgcatctca
ccagatctaaaacactctctggccatttgcagaacactgtcctaaccctg
tcccaagggaagggcccagtcttactcctgggggcctcatacactagctt
cacctcagtctagccctctcttccagtgagcatcagaatgcaggtggaaa
tctaccataaggtgtctagaagccgttcattattttctgtcttttcagta
gttagtaattgcagtgtaccttacaaaggcttgtggcccatgataagatg
tgataccatgtcaaggtcagccttcccatccatcctagggacccctttcc
caccccttaggatacactgactttaaaaggccaaggaccttgacctctaa
atgggacctcataaagcccaccttatggacccacacccctgctctgtggt
acccgggcactctgcaagcagacattctgacagcttctggttggcttcca
gagcccacaagccttcaaagtaccttatggtaattagaaaagggaccctt
tcctctcctgtcagaaaacataaagatggccttcttttattccctgttct
ggcatctggtcagtgatataagcatagcgaaagctgccagtgatgccaca
gaacaaacctgcttcctggatttgcaatggcttctgccagggcacggggt
tgtacactgtgtaatcaatgctgtttgctgtgcccaaggatctgtagcag

gaattcatttcacccaaagcgggcctgtacagtagttattgcaggttgta
ttttaagtggatgaaggggcatagcatgcacaggcctttcttgtctgtta
tttggtttcctgcgggggtgtgggaaatagtgtttcctgattacattaga
atgcaatgaaaccagatgctctttggaaaaaggataagcctggaggaggt
agaccatgctgctcctgacttgggtttatttagtttccttttttccctct
aagccatggtggcagcagacagccctgtaaggtctgcgtttacttcctgt
accaagcattagatgtaagagttgagaagggagctgcaatgtccatctag
gctttagtaagtgttcctttctctcttcagcacctggcgattaagtgtca
ctggacagaaagggcagcggtgattggggatgtgatccgagtgtacagtg
gtcatcaagggcgcacgatcatcttctgtgaaaccaagaaggatgcccag
gagctatctcagaacacgtgcataaagcaggttggtccttttcatacctg
aagcctgggtcttcagtgagtttttatcttggactctgctttcattctgg
atttcaattatccagtgacttccatgttgtgttagattaggggaagtgtc
tctgatggtcagggttttatgaaatctaccagtcctgcctcatgggtggt
ggttcactggtaaagctaacacctacaaaagtaggtatagtctcctttgg
gtgatatttctcaaccttggagagtgtagttagaaaagagttgatgtggg
ctggggagatggacccagcagttaagagtactgactgcagaggttctgag
ttcaaatccccaacaacccacgtggttgcctcaccaaccattctgtaatg
gggatcgaatgcccactttctgggtggtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61854300_61855456
seq2: B6Ng01-289A09.b_46_1195

seq1  GAATTCATGGTTCACAGTGGCCTCGGAGGCTCTCTCTACAGTTGTCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGTTCACAGTGGCCTCGGAGGCTCTCTCTACAGTTGTCAAAG  50

seq1  AAACATAACACAGAGAACAGGGTGAAGTGAAAGAGGTAGACCTCAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACACAGAGAACAGGGTGAAGTGAAAGAGGTAGACCTCAGAGCC  100

seq1  ATGTGGGAGCCAAGCCCAGCTTCCCACATCCTGTCATGGCATGCACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGAGCCAAGCCCAGCTTCCCACATCCTGTCATGGCATGCACCTCT  150

seq1  ACTGTAAGGTTTACCTGTAAACTGAGAGCAAAGCAGCATTCTAAGGGCCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGGTTTACCTGTAAACTGAGAGCAAAGCAGCATTCTAAGGGCCG  200

seq1  CAGGAGGCAGGGTTAGCCTCTGCCAGCCAGGAATGAACATTGCCAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGGGTTAGCCTCTGCCAGCCAGGAATGAACATTGCCAAAGAG  250

seq1  GGAGAGGGACCATCAATAACCATCGGGTCCTTGTCCAAGCCTCTGCCTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGGACCATCAATAACCATCGGGTCCTTGTCCAAGCCTCTGCCTAG  300

seq1  ACAATGTTCTCAGCGAAACGTATCCTTGAGCCTGATCTTAGCACATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTCAGCGAAACGTATCCTTGAGCCTGATCTTAGCACATTTCT  350

seq1  GAGGTGCTCAGCCTCTACTTGCTTGTTTGCCATCGTGATAAATCTCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTCAGCCTCTACTTGCTTGTTTGCCATCGTGATAAATCTCAGCT  400

seq1  TCCCCTCGGTTTATATATTATAAACCCAAGCTTAACTGGGACGCATCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCGGTTTATATATTATAAACCCAAGCTTAACTGGGACGCATCTCA  450

seq1  CCAGATCTAAAACACTCTCTGGCCATTTGCAGAACACTGTCCTAACCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATCTAAAACACTCTCTGGCCATTTGCAGAACACTGTCCTAACCCTG  500

seq1  TCCCAAGGGAAGGGCCCAGTCTTACTCCTGGGGGCCTCATACACTAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGGAAGGGCCCAGTCTTACTCCTGGGGGCCTCATACACTAGCTT  550

seq1  CACCTCAGTCTAGCCCTCTCTTCCAGTGAGCATCAGAATGCAGGTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGTCTAGCCCTCTCTTCCAGTGAGCATCAGAATGCAGGTGGAAA  600

seq1  TCTACCATAAGGTGTCTAGAAGCCGTTCATTATTTTCTGTCTTTTCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATAAGGTGTCTAGAAGCCGTTCATTATTTTCTGTCTTTTCAGTA  650

seq1  GTTAGTAATTGCAGTGTACCTTACAAAGGCTTGTGGCCCATGATAAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTAATTGCAGTGTACCTTACAAAGGCTTGTGGCCCATGATAAGATG  700

seq1  TGATACCATGTCAAGGTCAGCCTTCCCATCCATCCTAGGGACCCCTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCATGTCAAGGTCAGCCTTCCCATCCATCCTAGGGACCCCTTTCC  750

seq1  CACCCCTTAGGATACACTGACTTTAAAAGGCCAAGGACCTTGACCTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTTAGGATACACTGACTTTAAAAGGCCAAGGACCTTGACCTCTAA  800

seq1  ATGGGACCTCATAAAGCCCACCTTATGGACCCACACCCCTGCTCTGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCTCATAAAGCCCACCTTATGGACCCACACCCCTGCTCTGTGGT  850

seq1  ACCCGGGCACTCTGCAAGCAGACATTCTGACAGCTTCTGGTTGGCTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGGCACTCTGCAAGCAGACATTCTGACAGCTTCTGGTTGGCTTCCA  900

seq1  GAGCCCACAAGCCTTCAAAGTACCTTATGGTAATTAGAAAAGGGACCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCACAAGCCTTCAAAGTACCTTATGGTAATTAGAAAAGGGACCCTT  950

seq1  TCCTCTCCTGTCAG-AAACATAAAGATGGCCTTCTTTTATTCCCTGTTCT  999
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTGTCAGAAAACATAAAGATGGCCTTCTTTTATTCCCTGTTCT  1000

seq1  GGCATCTGGTTCAGTGATATAAGCATAGCGAAAGCTGCCAGGTTGATGCC  1049
      ||||||||| |||||||||||||||||||||||||||||||  |||||||
seq2  GGCATCTGG-TCAGTGATATAAGCATAGCGAAAGCTGCCAG--TGATGCC  1047

seq1  ACAGAACAGACCTGCTCCCTGGGTTTGGCAAAATGGCTTCTGCCAGGGCA  1099
      |||||||| ||||||| ||||| ||||    |||||||||||||||||||
seq2  ACAGAACAAACCTGCTTCCTGGATTTG---CAATGGCTTCTGCCAGGGCA  1094

seq1  CGGTGTTGTACACTGTGTATTCAGATGCTGTTTGCTGTGCCCAGAGATCT  1149
      ||| ||||||||||||||| ||| |||||||||||||||||||  |||||
seq2  CGGGGTTGTACACTGTGTAATCA-ATGCTGTTTGCTGTGCCCAAGGATCT  1143

seq1  GGTAGCAG  1157
       |||||||
seq2  -GTAGCAG  1150

seq1: chr10_62052139_62053055
seq2: B6Ng01-289A09.g_68_999 (reverse)

seq1  AGACAC--ACCAG-AAGTGGGCATTCGAT-CCCATTACAG-ATGGTT-GT  44
      ||||||   |||| ||||||||||||||| |||||||||| |||||| ||
seq2  AGACACCACCCAGAAAGTGGGCATTCGATCCCCATTACAGAATGGTTGGT  50

seq1  GA-GCCACCATGT-GGTTGTT-GGGATTTGAACTCAGAACCTCTGCAGTC  91
      || || |||| || ||||||| ||||||||||||||||||||||||||||
seq2  GAGGCAACCACGTGGGTTGTTGGGGATTTGAACTCAGAACCTCTGCAGTC  100

seq1  AGTACTCTTAACTGCTGGGT-CATCTCCCCAGCCCACATCAACTC-TTTC  139
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  AGTACTCTTAACTGCTGGGTCCATCTCCCCAGCCCACATCAACTCTTTTC  150

seq1  TAACTACACTCTCCAAGGTTGAG-AATATCACCCAAAGGAGACTATACCT  188
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAACTACACTCTCCAAGGTTGAGAAATATCACCCAAAGGAGACTATACCT  200

seq1  AC-TTTGTAGGTG-TAGCTTTACCAGTGAACCACCACCCATGAGGCAGGA  236
      || |||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTAGGTGTTAGCTTTACCAGTGAACCACCACCCATGAGGCAGGA  250

seq1  CTGGTAGATTTCAT-AAACCCTGACCATCAGAGACACTTCCCCTAATCTA  285
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGGTAGATTTCATAAAACCCTGACCATCAGAGACACTTCCCCTAATCTA  300

seq1  ACACAACATGGAAGTCACTGGATAATTGAAATCCAGAATGAAAGCAGAGT  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACATGGAAGTCACTGGATAATTGAAATCCAGAATGAAAGCAGAGT  350

seq1  CCAAGATAAAAACTCACTGAAGACCCAGGCTTCAGGTATGAAAAGGACCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATAAAAACTCACTGAAGACCCAGGCTTCAGGTATGAAAAGGACCA  400

seq1  ACCTGCTTTATGCACGTGTTCTGAGATAGCTCCTGGGCATCCTTCTTGGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTTATGCACGTGTTCTGAGATAGCTCCTGGGCATCCTTCTTGGT  450

seq1  TTCACAGAAGATGATCGTGCGCCCTTGATGACCACTGTACACTCGGATCA  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAAGATGATCGTGCGCCCTTGATGACCACTGTACACTCGGATCA  500

seq1  CATCCCCAATCACCGCTGCCCTTTCTGTCCAGTGACACTTAATCGCCAGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAATCACCGCTGCCCTTTCTGTCCAGTGACACTTAATCGCCAGG  550

seq1  TGCTGAAGAGAGAAAGGAACACTTACTAAAGCCTAGATGGACATTGCAGC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGAGAGAAAGGAACACTTACTAAAGCCTAGATGGACATTGCAGC  600

seq1  TCCCTTCTCAACTCTTACATCTAATGCTTGGTACAGGAAGTAAACGCAGA  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCAACTCTTACATCTAATGCTTGGTACAGGAAGTAAACGCAGA  650

seq1  CCTTACAGGGCTGTCTGCTGCCACCATGGCTTAGAGGGAAAAAAGGAAAC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACAGGGCTGTCTGCTGCCACCATGGCTTAGAGGGAAAAAAGGAAAC  700

seq1  TAAATAAACCCAAGTCAGGAGCAGCATGGTCTACCTCCTCCAGGCTTATC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACCCAAGTCAGGAGCAGCATGGTCTACCTCCTCCAGGCTTATC  750

seq1  CTTTTTCCAAAGAGCATCTGGTTTCATTGCATTCTAATGTAATCAGGAAA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCAAAGAGCATCTGGTTTCATTGCATTCTAATGTAATCAGGAAA  800

seq1  CACTATTTCCCACACCCCCGCAGGAAACCAAATAACAGACAAGAAAGGCC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTTCCCACACCCCCGCAGGAAACCAAATAACAGACAAGAAAGGCC  850

seq1  TGTGCATGCTATGCCCCTTCATCCACTTAAAATACAACCTGCAATAACTA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGCTATGCCCCTTCATCCACTTAAAATACAACCTGCAATAACTA  900

seq1  CTGTACAGGCCCGCTTTGGGTGAAATGAATTC  917
      ||||||||||||||||||||||||||||||||
seq2  CTGTACAGGCCCGCTTTGGGTGAAATGAATTC  932