BAC Information

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BAC

Clone NameB6Ng01-289A17
Chromosome10 (Build37)
Map Location 100,558,417 - 100,559,514
singlet/doubletsinglet
Overlap genenone
Upstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289A17.bB6Ng01-289A17.g
ACCGA086550GA086551
length1,1491,072
definitionB6Ng01-289A17.b B6Ng01-289A17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataacaaagatctgagaagcactagaaaaaatg
ttcaacatccgtaatcatcagggaaataaaaagtcaaaacaaccctgaga
ttccacttcaaccagtcagaatggctaagataaaaaaattcaggtgtcag
cagatgctggcaaggatgtggaaaaagagaaacactcctccattgctggt
gggattgcaagcttgttacaaccactctggaaatcagtctggcggttcct
cagaaaattggacatagtactactggaagatccagcaaaacttctcctgg
gcatatacccagaagatgttccaactgaaaataaggacacatgctccact
atgttcataacagccttatttataattgccagaaactgaaaagaacccag
atgttcctcaacagatgaatggatacagaaactgtggtaaatttatacaa
tggagtactactcagctattaaaaacaatgaatttatgaaattattgggc
aaatggatgtatctggaggatatcatcctgagtgaggtaacccaatcaca
aaagaagtcacttgatatgcactcactgataagtagatattagccatgaa
acttagaatacccaagatacaatttgcaaaacataagaaaatcaagaaga
aggaagaccaaagtgtggatacttcattcctccttagaatagggaacaaa
atacccagggatggagttacagagacaaagtttgaagctaagaccaaagg
atgggccatccagatactaccccactggggatccatcccataatcagcca
ccaaatgcagatactattgcatatgccagcaagattttactgaaaggacc
ctgatataactgtctcgtgtgaggctatgccagtgactggcaaatacaga
actggatgcttgcagtaatctattgggtagaacacaggtcaccaatggaa
cagctagagaaagcacctaggagctgaagtactatccagtatcccagagc
tcgtgtctctagcagcatttgtggcagaagatgactagtcgcatcattgg
ggagaagaagacccattggtctgcgactttatattccccagtacaggaat
gccaaggctaaatgggagtggggtgggttagggaaacaaggggtggggg
gaattccatacatgtacatacacatttccatccacatatttccttgtcaa
cctgtcctaaattctccaaacaaggccctcttagaaatacaggttttcct
ttttctgtattttaaaaaatttctcaaactacacttttaaataggaattg
tattctagtttgtcttttcttgcttcattgatctacacttctataatttt
ataactacttataaacatgttgcaaatcataggctcttcatcaccatcta
ggtgttagattgaaattacctaatactcttaatttaattgcttatgtttt
tattaattttattttaaaagtaacttaaagtaaccaaagatccatccagc
taagtaattccaacgtaaccttgtaattaaccatctggctactattgaag
tcttctggctcctaatttttttttaattgatgttcaacaaaccagcaccc
aatcttggcttcaaattcttcctctatgatcttctccacttaaccatctt
tttaccactgaaggttctctgcaaatatttagtaatgttgtgaattattt
tcaaactttagtctatcttttcctcctccttctcctcctaattttttcct
tcctttttgtttgttgttcattttgcattcttccccttatttcatttttt
aaaataatgaaaaattccatttattcaagaaattagcataaaaaagctta
catgctttgtttgctaatttaatttaaccataaatcttttgtttattaag
aaaaatatttcatatacaaacaccatgtacaaaaatctttatttgcaaaa
cagatcacacccaaaggtgttagaacaaaatgttcccagttgattcactt
agctataccatggcataatgggttaattctctgctgtaaataggatttga
aatccaagttttccatatctaaatcatggacattttcctgattaaatttt
ccatagcactctatttggtatttcatcatcgttgttgtttgttatcatta
ttttgttttgttttgctgttgtttgtttttctgagacaggattctcatat
agctgctgtcttgaattcactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_100558417_100559514
seq2: B6Ng01-289A17.g_68_1139 (reverse)

seq1  AAGTGAATTCCAGGACAGCCAGGGCTATATGGAGAAACCCTGTCTCAAGA  50
      ||||||||| || ||||||    ||||||| ||| || ||||||||    
seq2  AAGTGAATT-CAAGACAGC---AGCTATAT-GAG-AATCCTGTCTC----  40

seq1  AAAAACAAAAACAAACAAGCAAAAACAAAAAACAAAAATAAATGAATAAA  100
          | |||||||||||| ||  || | |||||||||   |||||   ||
seq2  ----AGAAAAACAAACAA-CAGCAAAACAAAACAAAA--TAATGA--TAA  81

seq1  CAAACAAACAAACGAATGAATGAAAATTACCCAAAATAGAGTGCTATGGA  150
      |||||||   |||| ||| ||||||  ||||  |||||||||||||||||
seq2  CAAACAA--CAACG-ATG-ATGAAA--TACC--AAATAGAGTGCTATGGA  123

seq1  AAATTTAATCAGGAAAATGTCCATGATTTAGATATGGAAAACTTGGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATCAGGAAAATGTCCATGATTTAGATATGGAAAACTTGGATTT  173

seq1  CAAATCCTATTTACAGCAGAGAATTAACCCATTATGCCATGGTATAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCTATTTACAGCAGAGAATTAACCCATTATGCCATGGTATAGCTA  223

seq1  AGTGAATCAACTGGGAACATTTTGTTCTAACACC-TTGGGTGTGATCTGT  299
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTGAATCAACTGGGAACATTTTGTTCTAACACCTTTGGGTGTGATCTGT  273

seq1  TTTGCAAATAAAGATTTTTGTACATGGTGTTTGTATATGAAATATTTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAATAAAGATTTTTGTACATGGTGTTTGTATATGAAATATTTTTC  323

seq1  TTAATAAACAAAAGATTTATGGTTAAATTAAATTAGCAAACAAAGCATGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAACAAAAGATTTATGGTTAAATTAAATTAGCAAACAAAGCATGT  373

seq1  AAGCTTTTTTATGCTAATTTCTTGAATAAATGGAATTTTTCATTATTTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTTTTATGCTAATTTCTTGAATAAATGGAATTTTTCATTATTTTA  423

seq1  AAAAATGAAATAAGGGGAAGAATGCAAAATGAACAACAAACAAAAAGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAAATAAGGGGAAGAATGCAAAATGAACAACAAACAAAAAGGAA  473

seq1  GGAAAAAATTAGGAGGAGAAGGAGGAGGAAAAGATAGACTAAAGTTTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATTAGGAGGAGAAGGAGGAGGAAAAGATAGACTAAAGTTTGAA  523

seq1  AATAATTCACAACATTACTAAATATTTGCAGAGAACCTTCAGTGGTAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCACAACATTACTAAATATTTGCAGAGAACCTTCAGTGGTAAAA  573

seq1  AGATGGTTAAGTGGAGAAGATCATAGAGGAAGAATTTGAAGCCAAGATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTAAGTGGAGAAGATCATAGAGGAAGAATTTGAAGCCAAGATTG  623

seq1  GGTGCTGGTTTGTTGAACATCAATTAAAAAAAAATTAGGAGCCAGAAGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGTTTGTTGAACATCAATTAAAAAAAAATTAGGAGCCAGAAGAC  673

seq1  TTCAATAGTAGCCAGATGGTTAATTACAAGGTTACGTTGGAATTACTTAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATAGTAGCCAGATGGTTAATTACAAGGTTACGTTGGAATTACTTAG  723

seq1  CTGGATGGATCTTTGGTTACTTTAAGTTACTTTTAAAATAAAATTAATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGGATCTTTGGTTACTTTAAGTTACTTTTAAAATAAAATTAATAA  773

seq1  AAACATAAGCAATTAAATTAAGAGTATTAGGTAATTTCAATCTAACACCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAGCAATTAAATTAAGAGTATTAGGTAATTTCAATCTAACACCT  823

seq1  AGATGGTGATGAAGAGCCTATGATTTGCAACATGTTTATAAGTAGTTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTGATGAAGAGCCTATGATTTGCAACATGTTTATAAGTAGTTATA  873

seq1  AAATTATAGAAGTGTAGATCAATGAAGCAAGAAAAGACAAACTAGAATAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATAGAAGTGTAGATCAATGAAGCAAGAAAAGACAAACTAGAATAC  923

seq1  AATTCCTATTTAAAAGTGTAGTTTGAGAAATTTTTTAAAATACAGAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTATTTAAAAGTGTAGTTTGAGAAATTTTTTAAAATACAGAAAAA  973

seq1  GGAAAACCTGTATTTCTAAGAGGGCCTTGTTTGGAGAATTTAGGACAGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCTGTATTTCTAAGAGGGCCTTGTTTGGAGAATTTAGGACAGGT  1023

seq1  TGACAAGGAAATATGTGGATGGAAATGTGTATGTACATGTATGGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGAAATATGTGGATGGAAATGTGTATGTACATGTATGGAATTC  1072