BAC Information

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BAC

Clone NameB6Ng01-289N02
Chromosome10 (Build37)
Map Location 43,961,152 - 44,118,925
singlet/doubletdoublet
Overlap geneAtg5
Upstream genePdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
Downstream geneLOC100041506, Prdm1, LOC546476, 4930431F10Rik, LOC629573, LOC100041529, EG215974, Prep, Popdc3, Bves, Lin28b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289N02.bB6Ng01-289N02.g
ACCGA087113GA087114
length1,142698
definitionB6Ng01-289N02.b B6Ng01-289N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,961,152 - 43,961,867)(44,118,228 - 44,118,925)
sequence
gaattctatcagaccttcaaagaagacctaatcccaatactcttcaaata
ttccacaaaatagacacagaaggaacactacccaattctttctatggagt
cacaattgcacttatacctaaaccacataaagacccaacagagttagaat
gtcagaccaattttccttatgaatatcgatgcaaaaatgctcaataaaat
tctcaaaaactgaatccaagaacacatacatcaaaatgattattcaccat
gcttcagaaggcttcatcccaggaatgcaaggattgtacaatatacagaa
atccatcaatgtaatctactatataaacaaactcaaaggggaaaaaaaac
cataatcatctcattagatgctgagaaagcatttgacacaattcaacacc
ccttcatggtaaaagtcttggaaagatcaggaattcaaggtctataccca
agcataataaaagcaatatacagcaaactagtagccaacatcaaaataaa
tggagaaaaacttgaagcaatccaactaaaatcaaggtctagacaaggct
gcccactctctccctacttattaaatatagttcttgaagtcctagccaga
gaaattcgaaaacaaaaggagatcaaagggatacaaataggaaaggaaga
agtcaaaatatcactatttgcagatgataaagaaaagcagtcctctccga
ctatctggggatgatcttgtgaaagagaaggaaaatgaatgtaagctgtt
tcagagctctcctaaggacaggaggaggtccagagacgtcctgcctcctc
tctggctcctactggaggaatgcttggttctgggtctcttaagaaggata
tctgggtccctttcgggaggtttgattctttcctttctgtctgttgtctg
tccttgacgtgccaatctgtccatagtctagccactcttcctacctttct
tctgatctgtctcacagtgtggatgacactgtggagatctctgtgcggat
cttcacttcactttctaatgagtagtgatctagtgcttgcatcactaacc
ccctgagagccagcggtccaatgagaatcctcacttacctctgaagaggc
agttgttcaatggcgagcctttcactcactttgaccaaagca
gaattcacttagaccaggttgacctcgaactcaaagatccacctgcctct
gcctcccaagtcctgggatcaaaggcatgcgccactactctctatttaag
gggaggcggtggcagtctgaattcccttgtgaatgtaactggcctctctt
tgccttgcttcctggagtttggtgaaggggttgatagggttaagcgattg
cctaagctgtctccatgctaagattaaaactgtgttctccgttcttagtt
agtgcacggattctgcctgacttttcgcctcgcctgacagttgctggaac
attgtcaaatttccttcacgtaaaactccaagtactgcctctcttgaatt
gttctaccctactctcagagataataatccattccagcactgaataggca
aaatgagattaccaggccagtccctgcccctcaagaagataacccttggt
gtccatgttaaaaaggatagataggttcaacactcaggaggcagaggcag
gctgctctctgggtttggggccattctaacctacacagtgagttccaagc
caaggctatacagtgaggccctctctcaaagatagatagatagatagata
gatagatagatagatagatagatagacagacaggtagatagacggataga
tggatggatagatagatagatagatagatagatagatagatagataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_43961152_43961867
seq2: B6Ng01-289N02.b_472_1189

seq1  GATCAGGAATTCAAGGTCTATACCCAAGCATAATAAAAGCAATATACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGAATTCAAGGTCTATACCCAAGCATAATAAAAGCAATATACAGC  50

seq1  AAACTAGTAGCCAACATCAAAATAAATGGAGAAAAACTTGAAGCAATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGTAGCCAACATCAAAATAAATGGAGAAAAACTTGAAGCAATCCA  100

seq1  ACTAAAATCAAGGTCTAGACAAGGCTGCCCACTCTCTCCCTACTTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATCAAGGTCTAGACAAGGCTGCCCACTCTCTCCCTACTTATTAA  150

seq1  ATATAGTTCTTGAAGTCCTAGCCAGAGAAATTCGAAAACAAAAGGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTCTTGAAGTCCTAGCCAGAGAAATTCGAAAACAAAAGGAGATC  200

seq1  AAAGGGATACAAATAGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATACAAATAGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGA  250

seq1  TGATAAAGAAAAGCAGTCCTCTCCGACTATCTGGGGATGATCTTGTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGAAAAGCAGTCCTCTCCGACTATCTGGGGATGATCTTGTGAAA  300

seq1  GAGAAGGAAAATGAATGTAAGCTGTTTCAGAGCTCTCCTAAGGACAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGAAAATGAATGTAAGCTGTTTCAGAGCTCTCCTAAGGACAGGAG  350

seq1  GAGGTCCAGAGACGTCCTGCCTCCTCTCTGGCTCCTACTGGAGGAATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAGAGACGTCCTGCCTCCTCTCTGGCTCCTACTGGAGGAATGCT  400

seq1  TGGTTCTGGGTCTCTTAAGAAGGATATCTGGGTCCC-TTCGGGAGGTTTG  449
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGTTCTGGGTCTCTTAAGAAGGATATCTGGGTCCCTTTCGGGAGGTTTG  450

seq1  ATTCTTTCCTTTCTGTCTGTTGTCTGTCCTTGACGTGCCAATCTGTCCAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCCTTTCTGTCTGTTGTCTGTCCTTGACGTGCCAATCTGTCCAT  500

seq1  AGTCTAGCCACTCTTCCTACCTTTC-TCTGATCTGTCTCACAGTGTGGAT  548
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCTAGCCACTCTTCCTACCTTTCTTCTGATCTGTCTCACAGTGTGGAT  550

seq1  GACACTGTGGAGATCTCTGTGCGGATCTTCAC-TCACTTTCTAATGAAGT  597
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  GACACTGTGGAGATCTCTGTGCGGATCTTCACTTCACTTTCTAATG-AGT  599

seq1  AGTGATCTAGTGCTGGCATCCACTAACCCCCTGAGGAGGCAGCGGTCCAA  647
      |||||||||||||| |||| |||||||||||||| ||| |||||||||||
seq2  AGTGATCTAGTGCTTGCAT-CACTAACCCCCTGA-GAGCCAGCGGTCCAA  647

seq1  TGAGATCCTTCACTTACCTCCTGAAGAGGCAGTGGTTCAAT-GCGAGCC-  695
      |||||  | |||||||||| ||||||||||||| ||||||| ||||||| 
seq2  TGAGAATCCTCACTTACCT-CTGAAGAGGCAGTTGTTCAATGGCGAGCCT  696

seq1  TTCACTCACTTTGA-CAAAGCA  716
      |||||||||||||| |||||||
seq2  TTCACTCACTTTGACCAAAGCA  718

seq1: chr10_44118228_44118925
seq2: B6Ng01-289N02.g_73_770 (reverse)

seq1  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCCATCCATC  50

seq1  TATCCGTCTATCTACCTGTCTGTCTATCTATCTATCTATCTATCTATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCGTCTATCTACCTGTCTGTCTATCTATCTATCTATCTATCTATCTA  100

seq1  TCTATCTATCTATCTATCTTTGAGAGAGGGCCTCACTGTATAGCCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTTTGAGAGAGGGCCTCACTGTATAGCCTTGGC  150

seq1  TTGGAACTCACTGTGTAGGTTAGAATGGCCCCAAACCCAGAGAGCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTCACTGTGTAGGTTAGAATGGCCCCAAACCCAGAGAGCAGCCT  200

seq1  GCCTCTGCCTCCTGAGTGTTGAACCTATCTATCCTTTTTAACATGGACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCCTGAGTGTTGAACCTATCTATCCTTTTTAACATGGACAC  250

seq1  CAAGGGTTATCTTCTTGAGGGGCAGGGACTGGCCTGGTAATCTCATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGTTATCTTCTTGAGGGGCAGGGACTGGCCTGGTAATCTCATTTTG  300

seq1  CCTATTCAGTGCTGGAATGGATTATTATCTCTGAGAGTAGGGTAGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAGTGCTGGAATGGATTATTATCTCTGAGAGTAGGGTAGAACAA  350

seq1  TTCAAGAGAGGCAGTACTTGGAGTTTTACGTGAAGGAAATTTGACAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAGAGGCAGTACTTGGAGTTTTACGTGAAGGAAATTTGACAATGT  400

seq1  TCCAGCAACTGTCAGGCGAGGCGAAAAGTCAGGCAGAATCCGTGCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAACTGTCAGGCGAGGCGAAAAGTCAGGCAGAATCCGTGCACTAA  450

seq1  CTAAGAACGGAGAACACAGTTTTAATCTTAGCATGGAGACAGCTTAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACGGAGAACACAGTTTTAATCTTAGCATGGAGACAGCTTAGGCA  500

seq1  ATCGCTTAACCCTATCAACCCCTTCACCAAACTCCAGGAAGCAAGGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGCTTAACCCTATCAACCCCTTCACCAAACTCCAGGAAGCAAGGCAAA  550

seq1  GAGAGGCCAGTTACATTCACAAGGGAATTCAGACTGCCACCGCCTCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCAGTTACATTCACAAGGGAATTCAGACTGCCACCGCCTCCCCT  600

seq1  TAAATAGAGAGTAGTGGCGCATGCCTTTGATCCCAGGACTTGGGAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAGAGTAGTGGCGCATGCCTTTGATCCCAGGACTTGGGAGGCAG  650

seq1  AGGCAGGTGGATCTTTGAGTTCGAGGTCAACCTGGTCTAAGTGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGGATCTTTGAGTTCGAGGTCAACCTGGTCTAAGTGAATTC  698