BAC Information

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BAC

Clone NameB6Ng01-290C18
Chromosome10 (Build37)
Map Location 98,935,360 - 99,068,549
singlet/doubletdoublet
Overlap geneLOC100042232, LOC667502
Upstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps
Downstream geneCsl, LOC100042246, Kitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290C18.bB6Ng01-290C18.g
ACCGA087378GA087379
length1,1691,109
definitionB6Ng01-290C18.b B6Ng01-290C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,067,404 - 99,068,549)(98,935,360 - 98,936,467)
sequence
gaattcaagcaacaatgtgacaccacaggagaagtatgagatgttttcct
ggacttggaattatactcagacaccggagggataggggaaaaaaaaaacg
tttaaaatatattgacattcttaaatcttgaaatattgcagagctaagtg
aaaagctgatacaaaatattaagttaaaacattaaatatcaaagaaaagt
ttcacctacgcacactctcttgcgatgcattgtgggaccctacaaactca
actcctgcctccccacaagaacacatatatttctctttgctcttggccat
gtttctggaaagaaaatatagaatgctctatgcaagatcacaaggattca
gtggaggccccaaaatactatggagcttggagttctaaatgctgatgttt
gttatgctggttttgaaattaaagtaaccatcacggagagggagaagtgg
gcacaaaatccaatcctagttaatgccttgttgaggttccctaggtgctg
ctatggaagacacagattcgttaagggtgtaacccctgcaaggcggacca
cctcctattcaggtaacacagaatagacttggacttttgagagagggaat
acaaaattgggtaggtcggagggtgagatggatctagaaagagctgtagg
gaaagaatataatcaaaatacattgcatgaacttctcaaagaattaataa
aacattttaatcgactattgacagttaaaatagtatatcagcttcaaggc
aaaaaaaacagtttaactcgtttctaagatgctttcttcccgggatgatt
taaaaaaaaaaaaaaaatcttgagtgatccagtgacgaagagaagaaaga
cagtaagcagctttcttttcttaagctgctgagggatggggcgtggagtt
gacaaggagacagacctcctggccgcactgtatgagagccacaagaggcc
agcatttcttgcagtgtggttcaatagtcatttcttatacaaccctgccc
acaataaccagtaccaaggtacttacaaggtctcctggcccctggagcag
agggtaactgaacctggtgtgggtaattgtcctaacaggccaagacttct
gcatcctgaccaaattgaacattccacctagcttagcaggaaactgaatc
catacctcaatatcacctg
gaattctacctgtggatttaagaaagaaataaatgcacatttttatttgt
ttatatctgaaaaatgtaagtagtctattgacctttctataacagtattt
ctacgtatttgattttccttttgctttgtaatggaaagacaatgaaaaca
gacagattacagccacaagccaaaggacccaaaaggcttaaaagatcagc
gcccagagaagggagggagattctctgctgggcacacccaggacttctca
gaacaggccgcattcctgcaggtcagagattctatgagaaaaggcttttt
ctcagtgacagtgtagcttgcccttgaccttggggcatgttgggtaaata
gttgaagaatgcctctgaaagaaacatagtaacatcttgcatctttctcc
ctctgtaattttagggctctttcagttaggggacgagagaatcctagtgt
tagctgcaatatcaaagtctgcaactacattcagaaaatagaaagcaatt
caatatgttaagagatcataatgcctgcattgatggagcctaggccttga
atttctgagctaaactgtttctattttgtggcaggaagagctcaagtttc
atcttttattctggtgtaaattcatcattaatgcgtttaaggagtagata
caggcctggattgtaaaaatctctctttataacattaagcagtagattta
ataaaaaaggcatcccagcctttgcgggctgtgtaagtgactgataagaa
cggaagcagaactgatagggtttgatcatcaccacagtgaagtaagtcca
aatggaccaggaaatgcacacgggagcaggatgtccaaaacaccagccag
ggagatactgactaggaaatgatacagaccagaagatacaagaagatatg
ggatacctcaattaaaaattggaggaaaatttgtaactataagcatgaaa
tgactagattctctagttttggatatatgatcatacccaagggaacacac
acacacacacacacacacacacacacacacacatcctcatcacactagaa
cgagcttccatcacttcaaggataaaaccattcacaggtcatgttttgtt
acaatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99067404_99068549
seq2: B6Ng01-290C18.b_47_1215 (reverse)

seq1  CAGGTGATATTGA-GTATG--ATCAAGTTCCTGCTAAGCTAGGT-GAATG  46
      ||||||||||||| |||||   |||  ||||||||||||||||| |||||
seq2  CAGGTGATATTGAGGTATGGATTCAGTTTCCTGCTAAGCTAGGTGGAATG  50

seq1  TTAAATTT-GTCAGGATGCAG-AGTCTTGCCCTGT--AGACA--TTCCCA  90
      || ||||| |||||||||||| ||||||| |||||   ||||  | ||||
seq2  TTCAATTTGGTCAGGATGCAGAAGTCTTGGCCTGTTAGGACAATTACCCA  100

seq1  CA-CAGGTTCAGTTA-CCTCTGCT-CAGGGGCCAGGAGACCTTGTAAGTA  137
      || |||||||||||| |||||||| |||||||||||||||||||||||||
seq2  CACCAGGTTCAGTTACCCTCTGCTCCAGGGGCCAGGAGACCTTGTAAGTA  150

seq1  CCTT-GTACT-GTTA-TGT-GGCAGGGTTGTATAAGAAATGACTA-TGAA  182
      |||| ||||| |||| ||| ||||||||||||||||||||||||| ||||
seq2  CCTTGGTACTGGTTATTGTGGGCAGGGTTGTATAAGAAATGACTATTGAA  200

seq1  CCACACTGCAAGAAATGCTGGCCTC-TGTGCTTCTCATACAGTGCGGCCA  231
      ||||||||||||||||||||||||| ||||  ||||||||||||||||||
seq2  CCACACTGCAAGAAATGCTGGCCTCTTGTGGCTCTCATACAGTGCGGCCA  250

seq1  GGAGGTCTGTCTCCTTGTCAACTCCACGCCCCATCCCTCAGCAGCTTAAG  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCTGTCTCCTTGTCAACTCCACGCCCCATCCCTCAGCAGCTTAAG  300

seq1  AAAAG-AAGCTGCTTACTGTC-TTCTTCTCTTCGTCACTGGATCACTCAA  329
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAGAAAGCTGCTTACTGTCTTTCTTCTCTTCGTCACTGGATCACTCAA  350

seq1  GA--TTTTTTTTTTTTTTAAATCATCCCGGGAAGAAAGCATCTTAGAAAC  377
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTTTTTTTTTTTAAATCATCCCGGGAAGAAAGCATCTTAGAAAC  400

seq1  GAGTTAAACTGTTTTTTTTGCCTTGAAGCTGATATACTATTTTAACTGTC  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAACTGTTTTTTTTGCCTTGAAGCTGATATACTATTTTAACTGTC  450

seq1  AATAGTCGATTAAAATGTTTTATTAATTCTTTGAGAAGTTCATGCAATGT  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCGATTAAAATGTTTTATTAATTCTTTGAGAAGTTCATGCAATGT  500

seq1  ATTTTGATTATATTCTTTCCCTACAGCTCTTTCTAGATCCATCTCACCCT  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATTATATTCTTTCCCTACAGCTCTTTCTAGATCCATCTCACCCT  550

seq1  CCGACCTACCCAATTTTGTATTCCCTCTCTCAAAAGTCCAAGTCTATTCT  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACCTACCCAATTTTGTATTCCCTCTCTCAAAAGTCCAAGTCTATTCT  600

seq1  GTGTTACCTGAATAGGAGGTGGTCCGCCTTGCAGGGGTTACACCCTTAAC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACCTGAATAGGAGGTGGTCCGCCTTGCAGGGGTTACACCCTTAAC  650

seq1  GAATCTGTGTCTTCCATAGCAGCACCTAGGGAACCTCAACAAGGCATTAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGTCTTCCATAGCAGCACCTAGGGAACCTCAACAAGGCATTAA  700

seq1  CTAGGATTGGATTTTGTGCCCACTTCTCCCTCTCCGTGATGGTTACTTTA  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATTGGATTTTGTGCCCACTTCTCCCTCTCCGTGATGGTTACTTTA  750

seq1  ATTTCAAAACCAGCATAACAAACATCAGCATTTAGAACTCCAAGCTCCAT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAAACCAGCATAACAAACATCAGCATTTAGAACTCCAAGCTCCAT  800

seq1  AGTATTTTGGGGCCTCCACTGAATCCTTGTGATCTTGCATAGAGCATTCT  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTGGGGCCTCCACTGAATCCTTGTGATCTTGCATAGAGCATTCT  850

seq1  ATATTTTCTTTCCAGAAACATGGCCAAGAGCAAAGAGAAATATATGTGTT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCTTTCCAGAAACATGGCCAAGAGCAAAGAGAAATATATGTGTT  900

seq1  CTTGTGGGGAGGCAGGAGTTGAGTTTGTAGGGTCCCACAATGCATCGCAA  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGGAGGCAGGAGTTGAGTTTGTAGGGTCCCACAATGCATCGCAA  950

seq1  GAGAGTGTGCGTAGGTGAAACTTTTCTTTGATATTTAATGTTTTAACTTA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGCGTAGGTGAAACTTTTCTTTGATATTTAATGTTTTAACTTA  1000

seq1  ATATTTTGTATCAGCTTTTCACTTAGCTCTGCAATATTTCAAGATTTAAG  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTATCAGCTTTTCACTTAGCTCTGCAATATTTCAAGATTTAAG  1050

seq1  AATGTCAATATATTTTAAACGTTTTTTTTTTCCCCTATCCCTCCGGTGTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAATATATTTTAAACGTTTTTTTTTTCCCCTATCCCTCCGGTGTC  1100

seq1  TGAGTATAATTCCAAGTCCAGGAAAACATCTCATACTTCTCCTGTGGTGT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATAATTCCAAGTCCAGGAAAACATCTCATACTTCTCCTGTGGTGT  1150

seq1  CACATTGTTGCTTGAATTC  1146
      |||||||||||||||||||
seq2  CACATTGTTGCTTGAATTC  1169

seq1: chr10_98935360_98936467
seq2: B6Ng01-290C18.g_64_1172

seq1  GAATTCTACCTGTGGATTTAAGAAAGAAATAAATGCACATTTTTATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTGTGGATTTAAGAAAGAAATAAATGCACATTTTTATTTGT  50

seq1  TTATATCTGAAAAATGTAAGTAGTCTATTGACCTTTCTATAACAGTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTGAAAAATGTAAGTAGTCTATTGACCTTTCTATAACAGTATTT  100

seq1  CTACGTATTTGATTTTCCTTTTGCTTTGTAATGGAAAGACAATGAAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGTATTTGATTTTCCTTTTGCTTTGTAATGGAAAGACAATGAAAACA  150

seq1  GACAGATTACAGCCACAAGCCAAAGGACCCAAAAGGCTTAAAAGATCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATTACAGCCACAAGCCAAAGGACCCAAAAGGCTTAAAAGATCAGC  200

seq1  GCCCAGAGAAGGGAGGGAGATTCTCTGCTGGGCACACCCAGGACTTCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGAAGGGAGGGAGATTCTCTGCTGGGCACACCCAGGACTTCTCA  250

seq1  GAACAGGCCGCATTCCTGCAGGTCAGAGATTCTATGAGAAAAGGCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGCCGCATTCCTGCAGGTCAGAGATTCTATGAGAAAAGGCTTTTT  300

seq1  CTCAGTGACAGTGTAGCTTGCCCTTGACCTTGGGGCATGTTGGGTAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGACAGTGTAGCTTGCCCTTGACCTTGGGGCATGTTGGGTAAATA  350

seq1  GTTGAAGAATGCCTCTGAAAGAAACATAGTAACATCTTGCATCTTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAGAATGCCTCTGAAAGAAACATAGTAACATCTTGCATCTTTCTCC  400

seq1  CTCTGTAATTTTAGGGCTCTTTCAGTTAGGGGACGAGAGAATCCTAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAATTTTAGGGCTCTTTCAGTTAGGGGACGAGAGAATCCTAGTGT  450

seq1  TAGCTGCAATATCAAAGTCTGCAACTACATTCAGAAAATAGAAAGCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCAATATCAAAGTCTGCAACTACATTCAGAAAATAGAAAGCAATT  500

seq1  CAATATGTTAAGAGATCATAATGCCTGCATTGATGGAGCCTAGGCCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGTTAAGAGATCATAATGCCTGCATTGATGGAGCCTAGGCCTTGA  550

seq1  ATTTCTGAGCTAAACTGTTTCTATTTTGTGGCAGGAAGAGCTCAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGCTAAACTGTTTCTATTTTGTGGCAGGAAGAGCTCAAGTTTC  600

seq1  ATCTTTTATTCTGGTGTAAATTCATCATTAATGCGTTTAAGGAGTAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTATTCTGGTGTAAATTCATCATTAATGCGTTTAAGGAGTAGATA  650

seq1  CAGGCCTGGATTGTAAAAATCTCTCTTTATAACATTAAGCAGTAGATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTGGATTGTAAAAATCTCTCTTTATAACATTAAGCAGTAGATTTA  700

seq1  ATAAAAAAGGCATCCCAGCCTTTGCGGGCTGTGTAAGTGACTGATAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAGGCATCCCAGCCTTTGCGGGCTGTGTAAGTGACTGATAAGAA  750

seq1  CGGAAGCAGAACTGATAGGGTTTGATCATCACCACAGTGAAGTAAGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAGCAGAACTGATAGGGTTTGATCATCACCACAGTGAAGTAAGTCCA  800

seq1  AATGGACCAGGAAATGCACACGGGAGCAGGATGTCCAAAACACCAGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACCAGGAAATGCACACGGGAGCAGGATGTCCAAAACACCAGCCAG  850

seq1  GGAGATACTGACTAGGAAATGATACAGACCAGAAGATACAAGAAGATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATACTGACTAGGAAATGATACAGACCAGAAGATACAAGAAGATATG  900

seq1  GGATACCTCAATTAAAAATTGGAGGAAAATTTGTAACTATAAGCATGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACCTCAATTAAAAATTGGAGGAAAATTTGTAACTATAAGCATGAAA  950

seq1  TGACTAGATTCTCTAGTTTTTGGATATATGATCATACCAAAGGAAACACA  1000
      |||||||||||||||| ||||||||||||||||||||| |||| ||||||
seq2  TGACTAGATTCTCTAG-TTTTGGATATATGATCATACCCAAGGGAACACA  999

seq1  CACACACACACACACACACACACACACACACACACACACACACACACACA  1050
      ||||||||||||||||||||||||||||||||||  | ||  |||||   
seq2  CACACACACACACACACACACACACACACACACATCCTCA-TCACACTAG  1048

seq1  AACAGAGC-TCCATCACTTCCAGGATAAAAACA-TCACAAGTCATGTTT-  1097
      ||| |||| ||||||||||| ||||||||| || ||||| ||||||||| 
seq2  AAC-GAGCTTCCATCACTTCAAGGATAAAACCATTCACAGGTCATGTTTT  1097

seq1  -GTACAATGCAC  1108
        ||||||||||
seq2  GTTACAATGCAC  1109