BAC Information

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BAC

Clone NameB6Ng01-290P03
Chromosome10 (Build37)
Map Location 113,877,476 - 114,031,528
singlet/doubletdoublet
Overlap geneTrhde
Upstream geneLOC100042655, LOC100042666
Downstream gene4930473D10Rik, Tph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290P03.bB6Ng01-290P03.g
ACCGA087959GA087960
length1,1231,110
definitionB6Ng01-290P03.b B6Ng01-290P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,877,476 - 113,878,603)(114,030,422 - 114,031,528)
sequence
gaattctccaatgatgtcaatgttaactaaccatcacactcagaatggga
tcaaagcttgcgttgtggtctccaatgctatttgaacaaaatactatggg
cacacaggtaatttcagtttaagtctattattgaaaaaacattgtgatcc
ctatgtggccaatgggataaactccactgtatgccagtgaaaagactgtc
aagtagaaattacgcgcagtagcagagcatctctatactcaactcagtga
aactcctatttcttatctatttatcagcaaatgaggaaaactactttcta
tctctggtttatgtttttaatatattaataataaaaagactggtctttct
tatgttttctttattttatttttaggtgtgagatttccaggtctcagaag
ctctctcctagttcatattttcaagatcattttatcatttgtattgttct
ctactgaaggcttggcaatttgtctcttttctaaactgtggcacccagat
gaacttagcctgcaaattgcaacctaacaagacctgaatgtagctcaatc
catttttatgcatgacatcaccattacaattcgacacattgtagcatttg
aatattttaaaaagggatcagaatgtcgactcattcaatttatcaccaac
tgtaagccctgaatttttctccctgctcgcatcatctccagctattcatg
ccactttttgtttccattatcccccttgcacggacattcacatctgttct
gttttcctgattccagtggctctgatttacccatctgcatctgtcaagat
gctgcaacagctcggcagcacccactattatatgtgaacttcacgacttc
tggattcattgtttattctgttttcagaataaacacacactttccaacac
tttccagatcttatttatgtgactcctggtaatcctcacttagatacttt
cttacaatttaccctttttaaggttccaggtaaacatcaaacaaagtgtg
ggaaagaagactgactaagcactcaactgtttctccttactgttcattta
gaaagttaaactttttattttttgggtgatatttactatcctatgcaccc
caccattccccccggaataacag

gaattcttacctgaacttctccctacataagcactgtcatgctcctagaa
atgagtttgagggacagccccaaacaatatttacatgatgccaattctca
gtatttgcacataaaacttctttttgttaattaaaatcctgtgaatgagc
aggttaacctacatgcctactataatcctagtcaccatttgaagcccaat
aaataacatttttacaaatctcctatacatatatatttatcttctctcac
agtatttttaatatttatttttctatgttatagttttcataccatcatta
tgattttaataagtagcagaattagagagatatattgtcctaatttaata
catattttgggtttcaaaacatcaccaatactgaaaagatatttgtgact
tcagaaaaaaaaaacaattcgatactaagaccaatctcttcgattgtttg
ttttgaaatatttaaagcatacataaaacgatgaatactattatgctaat
atcaatgtactcaccaccagctttaaaacattgatatgaagacattaatt
ccttatgtggctgtcctacaatctttttctcttcctttctcctcagttgc
aaccgtgaccttgaagttagtgtctttattatcagttcctgtgtgtgtgt
gcatggatattttctattgttatctttgctgcgagaagatgtgtatacac
aaaaaagaactatttttggatgttttgcttgtgagaagatatacatccag
taggcagtgttattctgaatgtttctagtgactataggggtcattttata
ccttctttctttattactatgttcctcagattgtctgtgttgatgcctga
aatggtagaacccagtgtggagatcacctattttaattgctatgtagtat
tcctttatgaaatgcttttatacccttgttggtgtattattttgggtgaa
aaggccatatagcatatacatttcccttttcaccttttgaaacaatacca
tattgcacattctcatacaattggctggtggcttgaacacattactcatt
tactgagctgggtttctattttggagggaggggcgtttattgtcaataag
aaacacatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_113877476_113878603
seq2: B6Ng01-290P03.b_45_1167

seq1  GAATTCTCCAATGATGTCAATGTTAACTAACCATCACACTCAGAATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAATGATGTCAATGTTAACTAACCATCACACTCAGAATGGGA  50

seq1  TCAAAGCTTGCGTTGTGGTCTCCAATGCTATTTGAACAAAATACTATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCTTGCGTTGTGGTCTCCAATGCTATTTGAACAAAATACTATGGG  100

seq1  CACACAGGTAATTTCAGTTTAAGTCTATTATTGAAAAAACATTGTGATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGTAATTTCAGTTTAAGTCTATTATTGAAAAAACATTGTGATCC  150

seq1  CTATGTGGCCAATGGGATAAACTCCACTGTATGCCAGTGAAAAGACTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGCCAATGGGATAAACTCCACTGTATGCCAGTGAAAAGACTGTC  200

seq1  AAGTAGAAATTACGCGCAGTAGCAGAGCATCTCTATACTCAACTCAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAATTACGCGCAGTAGCAGAGCATCTCTATACTCAACTCAGTGA  250

seq1  AACTCCTATTTCTTATCTATTTATCAGCAAATGAGGAAAACTACTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTATTTCTTATCTATTTATCAGCAAATGAGGAAAACTACTTTCTA  300

seq1  TCTCTGGTTTATGTTTTTAATATATTAATAATAAAAAGACTGGTCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGTTTATGTTTTTAATATATTAATAATAAAAAGACTGGTCTTTCT  350

seq1  TATGTTTTCTTTATTTTATTTTTAGGTGTGAGATTTCCAGGTCTCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCTTTATTTTATTTTTAGGTGTGAGATTTCCAGGTCTCAGAAG  400

seq1  CTCTCTCCTAGTTCATATTTTCAAGATCATTTTATCATTTGTATTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCTAGTTCATATTTTCAAGATCATTTTATCATTTGTATTGTTCT  450

seq1  CTACTGAAGGCTTGGCAATTTGTCTCTTTTCTAAACTGTGGCACCCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAGGCTTGGCAATTTGTCTCTTTTCTAAACTGTGGCACCCAGAT  500

seq1  GAACTTAGCCTGCAAATTGCAACCTAACAAGACCTGAATGTAGCTCAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGCCTGCAAATTGCAACCTAACAAGACCTGAATGTAGCTCAATC  550

seq1  CATTTTTATGCATGACATCACCATTACAATTCGACACATTGTAGCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTATGCATGACATCACCATTACAATTCGACACATTGTAGCATTTG  600

seq1  AATATTTTAAAAAGGGATCAGAATGTCGACTCATTCAATTTATCACCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAAAAAGGGATCAGAATGTCGACTCATTCAATTTATCACCAAC  650

seq1  TGTAAGCCCTGAATTTTTCTCCCTGCTCGCATCATCTCCAGCTATTCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCCTGAATTTTTCTCCCTGCTCGCATCATCTCCAGCTATTCATG  700

seq1  CCACTTTTTGTTTCCATTATCCCCCTTGCACGGACATTCACATCTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTTGTTTCCATTATCCCCCTTGCACGGACATTCACATCTGTTCT  750

seq1  GTTTTCCTGATTCCAGTGGCTCTGATTTACCCATCTGCATCTGTCAAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTGATTCCAGTGGCTCTGATTTACCCATCTGCATCTGTCAAGAT  800

seq1  GCTGCAACAGCTCGGCAGCACCCACTATTATATGTGAACTTCACGACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAACAGCTCGGCAGCACCCACTATTATATGTGAACTTCACGACTTC  850

seq1  TGGATTCATTGTTTATTCTGTTTTCAGAATAAACACACACTTTCCAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCATTGTTTATTCTGTTTTCAGAATAAACACACACTTTCCAACAC  900

seq1  TTTCCAGATCTTATTTATGTGACTCCTGGTAATCCTCACTTAGATACTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGATCTTATTTATGTGACTCCTGGTAATCCTCACTTAGATACTTT  950

seq1  CTTACAAATTACCCTTTTTAAGGTTCCAGGTAAACAATCAAACAAAGTGT  1000
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  CTTACAATTTACCCTTTTTAAGGTTCCAGGTAAAC-ATCAAACAAAGTGT  999

seq1  GGGAAAAGAAGACTGACTAAGCAACTCAAACCTGTTTCTCCCTTTACTGT  1050
      ||| |||||||||||||||||| ||||||  ||||||||||  |||||||
seq2  GGG-AAAGAAGACTGACTAAGC-ACTCAA--CTGTTTCTCC--TTACTGT  1043

seq1  TCATTTAAGAAAGTTAAAC-TTTTATTTTT--GGTGATATTACCTATCCC  1097
      |||||| |||||||||||| ||||||||||  |||||||||  |||| ||
seq2  TCATTT-AGAAAGTTAAACTTTTTATTTTTTGGGTGATATTTACTAT-CC  1091

seq1  TATGCA-CCCACCATTCCCCCCAAAATAACAG  1128
      |||||| |||||||||||||||  ||||||||
seq2  TATGCACCCCACCATTCCCCCCGGAATAACAG  1123


seq1: chr10_114030422_114031528
seq2: B6Ng01-290P03.g_65_1174 (reverse)

seq1  ACATGTG-TTCTTAATGACAATAAACG-CCCTCCCTCCAAAATAGAAACC  48
      ||||||| |||||| |||||||||||| ||||||||||||||||||||||
seq2  ACATGTGTTTCTTATTGACAATAAACGCCCCTCCCTCCAAAATAGAAACC  50

seq1  CAGCTCAGTAATGGAGTAATGTGTTCCAAGGCCACCAGCAAATTGTATGA  98
      |||||||||||  |||||||||||||  | ||||||||| ||||||||||
seq2  CAGCTCAGTAAATGAGTAATGTGTTC--AAGCCACCAGCCAATTGTATGA  98

seq1  GAATGTGCAATATGGTATTGTTTCAAAAGGTGAAAAGGG-AATGTATATG  147
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATGTGCAATATGGTATTGTTTCAAAAGGTGAAAAGGGAAATGTATATG  148

seq1  CTTATATGG-CTTTTCA-CCAAAATAATACACCAACAA-GGTATAAAAGC  194
      | ||||||| ||||||| |||||||||||||||||||| |||||||||||
seq2  C-TATATGGCCTTTTCACCCAAAATAATACACCAACAAGGGTATAAAAGC  197

seq1  ATTTCATAAAGGAATACTACATAGCAATTAAAATAGGTGATCTCCACACT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATAAAGGAATACTACATAGCAATTAAAATAGGTGATCTCCACACT  247

seq1  GGGTTCTACCATTTCAGGCATCAACACAGACAATCTGAGGAACATAGTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTACCATTTCAGGCATCAACACAGACAATCTGAGGAACATAGTAA  297

seq1  TAAAGAAAGAAGGTATAAAATGACCCCTATAGTCACTAGAAACATTCAGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGAAGGTATAAAATGACCCCTATAGTCACTAGAAACATTCAGA  347

seq1  ATAACACTGCCTACTGGATGTATATCTTCTCACAAGCAAAACATCCAAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTGCCTACTGGATGTATATCTTCTCACAAGCAAAACATCCAAAA  397

seq1  ATAGTTCTTTTTTGTGTATACACATCTTCTCGCAGCAAAGATAACAATAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTTTTTGTGTATACACATCTTCTCGCAGCAAAGATAACAATAG  447

seq1  AAAATATCCATGCACACACACACAGGAACTGATAATAAAGACACTAACTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCATGCACACACACACAGGAACTGATAATAAAGACACTAACTT  497

seq1  CAAGGTCACGGTTGCAACTGAGGAGAAAGGAAGAGAAAAAGATTGTAGGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCACGGTTGCAACTGAGGAGAAAGGAAGAGAAAAAGATTGTAGGA  547

seq1  CAGCCACATAAGGAATTAATGTCTTCATATCAATGTTTTAAAGCTGGTGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACATAAGGAATTAATGTCTTCATATCAATGTTTTAAAGCTGGTGG  597

seq1  TGAGTACATTGATATTAGCATAATAGTATTCATCGTTTTATGTATGCTTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACATTGATATTAGCATAATAGTATTCATCGTTTTATGTATGCTTT  647

seq1  AAATATTTCAAAACAAACAATCGAAGAGATTGGTCTTAGTATCGAATTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCAAAACAAACAATCGAAGAGATTGGTCTTAGTATCGAATTGT  697

seq1  TTTTTTTTTCTGAAGTCACAAATATCTTTTCAGTATTGGTGATGTTTTGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTGAAGTCACAAATATCTTTTCAGTATTGGTGATGTTTTGA  747

seq1  AACCCAAAATATGTATTAAATTAGGACAATATATCTCTCTAATTCTGCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAATATGTATTAAATTAGGACAATATATCTCTCTAATTCTGCTA  797

seq1  CTTATTAAAATCATAATGATGGTATGAAAACTATAACATAGAAAAATAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTAAAATCATAATGATGGTATGAAAACTATAACATAGAAAAATAAA  847

seq1  TATTAAAAATACTGTGAGAGAAGATAAATATATATGTATAGGAGATTTGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAATACTGTGAGAGAAGATAAATATATATGTATAGGAGATTTGT  897

seq1  AAAAATGTTATTTATTGGGCTTCAAATGGTGACTAGGATTATAGTAGGCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTATTTATTGGGCTTCAAATGGTGACTAGGATTATAGTAGGCA  947

seq1  TGTAGGTTAACCTGCTCATTCACAGGATTTTAATTAACAAAAAGAAGTTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTTAACCTGCTCATTCACAGGATTTTAATTAACAAAAAGAAGTTT  997

seq1  TATGTGCAAATACTGAGAATTGGCATCATGTAAATATTGTTTGGGGCTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCAAATACTGAGAATTGGCATCATGTAAATATTGTTTGGGGCTGT  1047

seq1  CCCTCAAACTCATTTCTAGGAGCATGACAGTGCTTATGTAGGGAGAAGTT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACTCATTTCTAGGAGCATGACAGTGCTTATGTAGGGAGAAGTT  1097

seq1  CAGGTAAGAATTC  1107
      |||||||||||||
seq2  CAGGTAAGAATTC  1110


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