BAC Information

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BAC

Clone NameB6Ng01-291E03
Chromosome10 (Build37)
Map Location 39,407,635 - 39,545,292
singlet/doubletdoublet
Overlap geneE130307A14Rik, Rev3l, EG666304
Upstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337, Traf3ip2, LOC667964, EG667970
Downstream geneLOC213332, 4930547M16Rik, LOC667982, 2010001E11Rik, LOC667994, LOC100041085, BC021785, AI317395, EG666342, Slc16a10, Bxdc1, 2410016F19Rik, Amd1, Amd2, LOC668051, Cdc2l6, LOC666374, Slc22a16, Ddo, 9030224M15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291E03.bB6Ng01-291E03.g
ACCGA088193GA088194
length1,130655
definitionB6Ng01-291E03.b B6Ng01-291E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,544,150 - 39,545,292)(39,407,635 - 39,408,287)
sequence
gaattcagtactagtaaatttaagtctaagagtcatcaacttaatttctc
taggtacagttttctagtttgtgaatttgcttaatcagtctataattaca
aataattttcttcactgttcttaaaaatgcagtaacacagctagaagact
agcaatcagttatgaaatattatagaaataaaaattattcaaagtgaccc
aaggtgggggaggattaattctgattacctgggcttttctggcacatccg
aaggattactgcaaaatggttcctgatatatagcttctgaaagatcatga
tctagcaaagttgccacaatttcttccctacttggtggggacataagtgg
tttcagaatatgagcagttcgaggagtaaaactgccatttttagactgta
agggagaactggtagaccttggtgaactatcaggagttggtgtcaacaca
tcattgttccttgagacatacaattctaaatcttccgaagctgcgtccac
aagttccccatcaggggaggaaagtatggtagtaaaagaggtattagcag
agtggagagactgatctgcttctttgcggttatgaccttgaatccagtct
gaactgtttgcctgtgggagactgagaaacacttccttactcactgaact
cctattcagtcttgatttttctgttagacagttctctgcttgctggacac
agaaagattccattattgagttagaatgagatgtcagaggatgaaagcta
tttttccactggctgtgccgatgattctcattgttatccatagctacttt
ctcaaaaagttcggggtttaaagtactggctctgatccatgggctggagt
cggagacatggtgcttttcctcactacaactctgtctgtcgtgacttagc
agctcactcttgtctatagcttgtcctggaaaaagatcctgaacagcatc
gctcagaaacttctgcgcaaattctgatcagctggacaactgactaccag
agtaaagctacaattcagttctggccaattgtgttaatatcaatatatta
ttgttcaggagacaggctatcttcaaggtgataacactttcaactggatt
ctggagaaagatggactgtcatctgatagg
gaattcaattaggcatatcccaactctaaatgcagaaggaagaggggcct
cagtgtacagaatattttgttgactgagcaggctgaagaagagcaggcat
cctactcctgaagcatgggtctacagaggaacctcaccaagcaactaaac
tgacactggtgccttcagctgggactgcacttgtattcagtatctgactc
cactcagtcataaaggccatcctgacagttcctcaagctggctcttctcc
agaagaggcatctccttgctgttaccacatgcttccgtcatttctgtttc
ccgcctcagcagtcactgacttctctctaaaatacctttgatctccactc
agcaaggcctaccataaaataaatggggataaaaagagtacctaacacag
ccgtaattcattatatacatgaatgaaatcatcaaagagtaaacaagttt
taaaaacatgcacaagattgggctagtcaaactttatcacagacagggga
agctcatcaggcctcaggcctccctgagagcttattggcagtttatggct
gttaggggtgaagggtggggttggccactttctttagcggtgtagcaccc
ccccccccattggctgcatatgctgcagtaaataacttcccgccctatgc
tcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_39544150_39545292
seq2: B6Ng01-291E03.b_44_1173 (reverse)

seq1  CCTATCAGATGACAGTCCCATCCTTTTCTCAG-ATCCAGGTTTTGAAAGT  49
      |||||||||||||||| ||||| || || ||| ||||||   ||||||| 
seq2  CCTATCAGATGACAGT-CCATCTTTCTC-CAGAATCCAG---TTGAAAG-  44

seq1  TGTTATTCACTTGAAGATAGCCTGTCTCCTGAACATAATTATAATTTTGA  99
      ||||||   ||||||||||||||||||||||||||  | ||||   ||||
seq2  TGTTATCACCTTGAAGATAGCCTGTCTCCTGAACAATAATATA---TTGA  91

seq1  TATTAACACAATTGGCCAG-ACTGGATTTTGTAGCTTTTACTCTGGTAGT  148
      ||||||||||||||||||| |||| |  ||||||| ||||||||||||||
seq2  TATTAACACAATTGGCCAGAACTGAA--TTGTAGC-TTTACTCTGGTAGT  138

seq1  CAGTTTGTTCCAGCTGATCAGAATTTGCCGCAGAAGTTTCTGAGCGATGC  198
      |||||   ||||||||||||||||||| ||||||||||||||||||||||
seq2  CAGTT--GTCCAGCTGATCAGAATTTG-CGCAGAAGTTTCTGAGCGATGC  185

seq1  TGTTCAGGATCTTTTTCCAGGACAAGCTATAGACAAGAGTGAGCTGCTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGATCTTTTTCCAGGACAAGCTATAGACAAGAGTGAGCTGCTAA  235

seq1  GTCACGACAGACAGAGTTGTAGTGAGGAAAAGCACCATGTCTCCGACTCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGACAGACAGAGTTGTAGTGAGGAAAAGCACCATGTCTCCGACTCC  285

seq1  AGCCCATGGATCAGAGCCAGTACTTTAAACCCCGAACTTTTTGAGAAAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGATCAGAGCCAGTACTTTAAACCCCGAACTTTTTGAGAAAGT  335

seq1  AGCTATGGATAACAATGAGAATCATCGGCACAGCCAGTGGAAAAATAGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGGATAACAATGAGAATCATCGGCACAGCCAGTGGAAAAATAGCT  385

seq1  TTCATCCTCTGACATCTCATTCTAACTCAATAATGGAATCTTTCTGTGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTCTGACATCTCATTCTAACTCAATAATGGAATCTTTCTGTGTC  435

seq1  CAGCAAGCAGAGAACTGTCTAACAGAAAAATCAAGACTGAATAGGAGTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGCAGAGAACTGTCTAACAGAAAAATCAAGACTGAATAGGAGTTC  485

seq1  AGTGAGTAAGGAAGTGTTTCTCAGTCTCCCACAGGCAAACAGTTCAGACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTAAGGAAGTGTTTCTCAGTCTCCCACAGGCAAACAGTTCAGACT  535

seq1  GGATTCAAGGTCATAACCGCAAAGAAGCAGATCAGTCTCTCCACTCTGCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCAAGGTCATAACCGCAAAGAAGCAGATCAGTCTCTCCACTCTGCT  585

seq1  AATACCTCTTTTACTACCATACTTTCCTCCCCTGATGGGGAACTTGTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTCTTTTACTACCATACTTTCCTCCCCTGATGGGGAACTTGTGGA  635

seq1  CGCAGCTTCGGAAGATTTAGAATTGTATGTCTCAAGGAACAATGATGTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGCTTCGGAAGATTTAGAATTGTATGTCTCAAGGAACAATGATGTGT  685

seq1  TGACACCAACTCCTGATAGTTCACCAAGGTCTACCAGTTCTCCCTTACAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCAACTCCTGATAGTTCACCAAGGTCTACCAGTTCTCCCTTACAG  735

seq1  TCTAAAAATGGCAGTTTTACTCCTCGAACTGCTCATATTCTGAAACCACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAATGGCAGTTTTACTCCTCGAACTGCTCATATTCTGAAACCACT  785

seq1  TATGTCCCCACCAAGTAGGGAAGAAATTGTGGCAACTTTGCTAGATCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCCCACCAAGTAGGGAAGAAATTGTGGCAACTTTGCTAGATCATG  835

seq1  ATCTTTCAGAAGCTATATATCAGGAACCATTTTGCAGTAATCCTTCGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCAGAAGCTATATATCAGGAACCATTTTGCAGTAATCCTTCGGAT  885

seq1  GTGCCAGAAAAGCCCAGGTAATCAGAATTAATCCTCCCCCACCTTGGGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGAAAAGCCCAGGTAATCAGAATTAATCCTCCCCCACCTTGGGTC  935

seq1  ACTTTGAATAATTTTTATTTCTATAATATTTCATAACTGATTGCTAGTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATAATTTTTATTTCTATAATATTTCATAACTGATTGCTAGTCT  985

seq1  TCTAGCTGTGTTACTGCATTTTTAAGAACAGTGAAGAAAATTATTTGTAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTGTGTTACTGCATTTTTAAGAACAGTGAAGAAAATTATTTGTAA  1035

seq1  TTATAGACTGATTAAGCAAATTCACAAACTAGAAAACTGTACCTAGAGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACTGATTAAGCAAATTCACAAACTAGAAAACTGTACCTAGAGAA  1085

seq1  ATTAAGTTGATGACTCTTAGACTTAAATTTACTAGTACTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTGATGACTCTTAGACTTAAATTTACTAGTACTGAATTC  1130

seq1: chr10_39407635_39408287
seq2: B6Ng01-291E03.g_69_723

seq1  GAATTCAATTAGGCATATCCCAACTCTAAATGCAGAAGGAAGAGGGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTAGGCATATCCCAACTCTAAATGCAGAAGGAAGAGGGGCCT  50

seq1  CAGTGTACAGAATATTTTGTTGACTGAGCAGGCTGAAGAAGAGCAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACAGAATATTTTGTTGACTGAGCAGGCTGAAGAAGAGCAGGCAT  100

seq1  CCTACTCCTGAAGCATGGGTCTACAGAGGAACCTCACCAAGCAACTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCTGAAGCATGGGTCTACAGAGGAACCTCACCAAGCAACTAAAC  150

seq1  TGACACTGGTGCCTTCAGCTGGGACTGCACTTGTATTCAGTATCTGACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGGTGCCTTCAGCTGGGACTGCACTTGTATTCAGTATCTGACTC  200

seq1  CACTCAGTCATAAAGGCCATCCTGACAGTTCCTCAAGCTGGCTCTTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGTCATAAAGGCCATCCTGACAGTTCCTCAAGCTGGCTCTTCTCC  250

seq1  AGAAGAGGCATCTCCTTGCTGTTACCACATGCTTCCGTCATTTCTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGCATCTCCTTGCTGTTACCACATGCTTCCGTCATTTCTGTTTC  300

seq1  CCGCCTCAGCAGTCACTGACTTCTCTCTAAAATACCTTTGATCTCCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTCAGCAGTCACTGACTTCTCTCTAAAATACCTTTGATCTCCACTC  350

seq1  AGCAAGGCCTACCATAAAATAAATGGGGATAAAAAGAGTACCTAACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCTACCATAAAATAAATGGGGATAAAAAGAGTACCTAACACAG  400

seq1  CCGTAATTCATTATATACATGAATGAAATCATCAAAGAGTAAACAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAATTCATTATATACATGAATGAAATCATCAAAGAGTAAACAAGTTT  450

seq1  TAAAAACATGCACAAGATTGGGCTAGTCAAACTTTATCACAGACAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATGCACAAGATTGGGCTAGTCAAACTTTATCACAGACAGGGGA  500

seq1  AGCTCATCAGGCCTCAGGCCTCCCTGAGAGCTTATTGGCAGTTTATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCAGGCCTCAGGCCTCCCTGAGAGCTTATTGGCAGTTTATGGCT  550

seq1  GTTAGGGGTGAAGGGTGGGGTTGGCCACTTTCTTTAGCGGTGTAGCA-CC  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTAGGGGTGAAGGGTGGGGTTGGCCACTTTCTTTAGCGGTGTAGCACCC  600

seq1  CCCCCCCCATTGGCTGCATATGCTGCAGTAAATAACTTCCCG-CCTATGC  648
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCCCCCCCATTGGCTGCATATGCTGCAGTAAATAACTTCCCGCCCTATGC  650

seq1  TCATG  653
      |||||
seq2  TCATG  655