BAC Information

Click to search

BAC

Clone NameB6Ng01-291K03
ChromosomeX (Build37)10 (Build37)
Map Location 79,246,564 - 79,246,836103,561,129 - 103,562,237
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem47, LOC100041462, LOC100041474, 4930595M18Rik, EG667799
Downstream geneEG629310, Dmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291K03.bB6Ng01-291K03.g
ACCGA088469GA088470
length1,0221,080
definitionB6Ng01-291K03.b B6Ng01-291K03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,246,564 - 79,246,836)(103,561,129 - 103,562,237)
sequence
gaattctcaactgaggaatacctaatggctgagaaacacctaaaaaaatg
ttcaacatctttagtcatcagaaaaatgcaaatcaaaacaaccctgagat
tccatctcataccagtcagaatggctaagatcaaaactcaggtgacagca
gatgctggcaaggatgtggagaaagaggaacactcctccattctggtggg
attgcaagctgataaaaccacacttggaaatcagtttggcagttcctcag
aaaattagacatagtactacctgaggacccagcaataccactcctgggca
taatcccagaagattttccatcttgtaagaaggacacatgctctactata
ttaatagcagccttatttataatagcaagaagctggaaagaatgtccctc
aacagaggaatggatacagaaaatgtggtacatttacacaatacagtact
cctctgctattaaaaacaatgaatttatgaaattcttagacaaatggatg
gatctggaggatatcattctgaatgaggtaacccaatcacaaaagaacac
acatggtatgcactcactgataagtgcttgctgacaggagcttgatatag
ctgtctcctgagaggctttgccagtgcctgccaaaccagcagtagatgct
catagccatccattggattgaatacagggtccccaatgaaggagctacag
aaaggacccaaggagatgaaggggtttacagccccataggaggaacaaca
atatgaacttaccactacccccagaggtcactgagactacaccagcaacc
aaagaatcacatggtagtacttatggctccagctacatatgttacagacg
atggcctaatcagttatcaatgggaggagaggctcttggtcctatgaagg
ctttatgccagggccaggaagcagaagtggtagttgatagcaggggaaag
gggaagtgatagggcaggcattttgaaggaaaccaggaaagggataacat
aatgaaatgtaaataaagaaaa

gaattctctgaacaaaaagagaactcttttgagatgtcagagtcacagaa
cagctgaagagattaatggtcaacctaaggacattgtagttgtagttgct
gcagaggaggagcaagtccattgcaaagtttcatgcagaaaatatatgta
gtaaaatatcacctattctttttccaaatgaaaagaggtagttttcagag
actaactatacatgagtcactatcatattcaggattatatgtcataatga
acattaattttctaatgtttaatgtctttgtaaatgcctgatttttgtca
ggcaatgctctgaaatcacctcttgtataaatctcgccagagtaaacaaa
atggaaagcacaccattgatttatactaaaacaataaatcctttagtgat
gagatctagcactacctgcctttcactcagttcactttagtcttcttccc
aagtatttgcaggtgaacattaaattctaccgtcttcctatttggctgat
tgtcagactgtgggtagctaattcaaattacaacaaattcttatatattt
catgtccattcattccccttgtacacatttcttagatttccaaagctaac
atcttcacattattattaaatgagtcctcagcatattgggggactcaaat
atatactcaaatatatacagttatgaactaagatttcattagatcgttta
aatgttgaatatgaatcttcaaggagagaatttatacatctgattataat
aatattcattgtaaaattccagttaatttcataactgatcaatatttcta
ttggattttcactacaacttgtatataatttcaagtaaaggaaaacattt
gtcatttctaatttttatttctatgactatcatattttataaaaggctag
acttgtatattaaaagttgtaaaatcattgatcatatacactactctaac
gggaacctagaaaacatacctgacatcctgtctttctacattgtaaactt
tccttttcttttttcttttttctttttttttttttttttcgattaaaata
actaggcattctcctttattgctactgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_79246564_79246836
seq2: B6Ng01-291K03.b_780_1066 (reverse)

seq1  TTTTCTTTATTTACATTTCTTTTTTTTTAAGGTAT---TTTCCTCGTTTA  47
      |||||||||||||||||||       ||| | |||   |||||| |||| 
seq2  TTTTCTTTATTTACATTTC------ATTATGTTATCCCTTTCCTGGTTTC  44

seq1  CATTTTCAATGCTATCCCAAAGGTCCCCCATATCCACCCCCCCATCCCCT  97
      |   ||||          ||| | |  || ||| |||  |||| | ||| 
seq2  C---TTCA----------AAATGCCTGCCCTAT-CACTTCCCCTTTCCCC  80

seq1  ACCCACCCACTGCCCCTTTTTGGCCCTGGTGTTCCCCTGTACTGGGGCAT  147
        | | | ||| || ||| |    |||||     ||||       |||||
seq2  TGCTATCAACTACCACTTCTGCTTCCTGG-----CCCT-------GGCAT  118

seq1  ATAAAGTTTGCAAGTCCAATCGGCCTCTCTTTGCAGTGATGACCGACTAG  197
      | |   ||   | | ||||   ||||||| |  || |||| || || |||
seq2  AAAGCCTTCATAGGACCAA-GAGCCTCTCCTCCCATTGATAACTGATTAG  167

seq1  GCCATCTTTTGATACATATGCAGCTAAAG--ACAAGAGCTCCC-------  238
      |||||| | ||  ||||||| ||||  ||  | |||  || ||       
seq2  GCCATCGTCTGTAACATATGTAGCTGGAGCCATAAGTACTACCATGTGAT  217

seq1  -----------------------------------GGGTACTGGTTAGTT  253
                                         ||||| |||| ||||
seq2  TCTTTGGTTGCTGGTGTAGTCTCAGTGACCTCTGGGGGTAGTGGTAAGTT  267

seq1  CATATTGTTGTTCCACCTAT  273
      |||||||||||||| |||||
seq2  CATATTGTTGTTCCTCCTAT  287


seq1: chr10_103561129_103562237
seq2: B6Ng01-291K03.g_62_1141 (reverse)

seq1  AGACAGTAGCAAATAAAGGAGAATGCCCTAGGTATATTAAAACCAAAAAA  50
      |||||||||| |||||||||||||| ||||| ||| ||            
seq2  AGACAGTAGC-AATAAAGGAGAATG-CCTAGTTATTTT------------  36

seq1  AAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAGAAAAAAAAGAAAAAAGA  100
      ||   |||||||||||||||||||||||| || ||| ||||| |||    
seq2  AATCGAAAAAAAAAAAAAAAAAGAAAAAAGAAAAAAGAAAAGGAAA----  82

seq1  AAAAGATTTACAAATGTTAGAAAAGACAAGGATGTCAGGTATGTTTTCTT  150
            ||||| |||| ||| |||||| |||||||||||||||||||| |
seq2  -----GTTTAC-AATG-TAG-AAAGAC-AGGATGTCAGGTATGTTTTC-T  122

seq1  AGGTTCCCGTTAGAGTAGTGTATATGATCAATGATTTTACAACTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCGTTAGAGTAGTGTATATGATCAATGATTTTACAACTTTTAAT  172

seq1  ATTACAAGTCTAGCCTTTTATAAAATATGATAGTCATAGAAATAAAAATT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TACAAGTCTAGCCTTTTATAAAATATGATAGTCATAGAAATAAAAATT  221

seq1  AGAAATGACAAATGTTTTCCTTTACTTGAAATTATATACAAGTTGTAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGACAAATGTTTTCCTTTACTTGAAATTATATACAAGTTGTAGTG  271

seq1  AAAATCCAATAGAAATATTGATCAGTTATGAAATTAACTGGAATTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCAATAGAAATATTGATCAGTTATGAAATTAACTGGAATTTTACA  321

seq1  ATGAATATTATTATAATCAGATGTATAAATTCTCTCCTTGAAGATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATTATTATAATCAGATGTATAAATTCTCTCCTTGAAGATTCATA  371

seq1  TTCAACATTTAAACGATCTAATGAAATCTTAGTTCATAACTGTATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATTTAAACGATCTAATGAAATCTTAGTTCATAACTGTATATATT  421

seq1  TGAGTATATATTTGAGTCCCCCAATATGCTGAGGACTCATTTAATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATATTTGAGTCCCCCAATATGCTGAGGACTCATTTAATAATAA  471

seq1  TGTGAAGATGTTAGCTTTGGAAATCTAAGAAATGTGTACAAGGGGAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGATGTTAGCTTTGGAAATCTAAGAAATGTGTACAAGGGGAATGA  521

seq1  ATGGACATGAAATATATAAGAATTTGTTGTAATTTGAATTAGCTACCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATGAAATATATAAGAATTTGTTGTAATTTGAATTAGCTACCCAC  571

seq1  AGTCTGACAATCAGCCAAATAGGAAGACGGTAGAATTTAATGTTCACCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACAATCAGCCAAATAGGAAGACGGTAGAATTTAATGTTCACCTG  621

seq1  CAAATACTTGGGAAGAAGACTAAAGTGAACTGAGTGAAAGGCAGGTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTGGGAAGAAGACTAAAGTGAACTGAGTGAAAGGCAGGTAGTG  671

seq1  CTAGATCTCATCACTAAAGGATTTATTGTTTTAGTATAAATCAATGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCTCATCACTAAAGGATTTATTGTTTTAGTATAAATCAATGGTGT  721

seq1  GCTTTCCATTTTGTTTACTCTGGCGAGATTTATACAAGAGGTGATTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATTTTGTTTACTCTGGCGAGATTTATACAAGAGGTGATTTCAG  771

seq1  AGCATTGCCTGACAAAAATCAGGCATTTACAAAGACATTAAACATTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCCTGACAAAAATCAGGCATTTACAAAGACATTAAACATTAGAA  821

seq1  AATTAATGTTCATTATGACATATAATCCTGAATATGATAGTGACTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGTTCATTATGACATATAATCCTGAATATGATAGTGACTCATGT  871

seq1  ATAGTTAGTCTCTGAAAACTACCTCTTTTCATTTGGAAAAAGAATAGGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTAGTCTCTGAAAACTACCTCTTTTCATTTGGAAAAAGAATAGGTG  921

seq1  ATATTTTACTACATATATTTTCTGCATGAAACTTTGCAATGGACTTGCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACTACATATATTTTCTGCATGAAACTTTGCAATGGACTTGCTC  971

seq1  CTCCTCTGCAGCAACTACAACTACAATGTCCTTAGGTTGACCATTAATCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCAGCAACTACAACTACAATGTCCTTAGGTTGACCATTAATCT  1021

seq1  CTTCAGCTGTTCTGTGACTCTGACATCTCAAAAGAGTTCTCTTTTTGTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCTGTTCTGTGACTCTGACATCTCAAAAGAGTTCTCTTTTTGTTC  1071

seq1  AGAGAATTC  1109
      |||||||||
seq2  AGAGAATTC  1080


| Home | SequenceCutter | Blast | Download |