BAC Information

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BAC

Clone NameB6Ng01-291P07
Chromosome10 (Build37)
Map Location 4,374,354 - 4,527,310
singlet/doubletdoublet
Overlap geneRgs17, Mtrf1l
Upstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
Downstream geneFbxo5, LOC666395, Vip, Myct1, Syne1, Esr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P07.bB6Ng01-291P07.g
ACCGA088714GA088715
length1,1241,067
definitionB6Ng01-291P07.b B6Ng01-291P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,374,354 - 4,375,493)(4,526,233 - 4,527,310)
sequence
gaattcttcccattttcatatcatggcattcagagagaaacaatagactt
acagcagaatagagatgcctgccaggaattgtcattttctagggaatcgg
gacctcgggacaactatgtaaaccatttgtagcaagtcagtgcaaatgct
aagcaccatctaagctctccatgctgagtgtctcccttagcaaatgctct
caagcatcgataactaatgtgtgagatgctttgtttcaagtattcactct
cctctttaacaaaaccacccaaagattgaggaaactcttcaagctctcat
ttcacatgtgtgcgttttcagattgttagaagtaacaattccaaatcctg
ttatacagcaggcctcaactaccagcagggagtgtatgcaaagaaagctt
gctaaagactgatatattaggacaatgttacacatggatagtgtttgcta
tcctcctcccaggaggcatctgtacattcctagaggggagtaaggaaatg
ttgatttacttaaactgggcttctctctgcctctcttacctctgagcctc
actgggccaactgctctaaactgtctttatcactgattttaccatatagt
cagagaaccttgtttacatccaagaactcagcatttgagttacaagggcg
atgacagcagaccttcaacaatctgcatctttgcttggcttcctgtgctc
caggagctgagaatgaatggccctaaaaatcactgggggtttggatacag
gtctccacagatcattctggtaaatgtttagggaatttgtgtagcagaaa
gcctgtgctgtgactgaataaaatggaagccaggaaaatcaagccacaag
ataaaattaatctcaagagaataaactgcttttagtgacattattgtata
ccaaaattaaattattctgctgatgtgtaaagacaaacagagacttgatg
gtctagaaataacttcttccattagttgaatatctaggtaaaatccttaa
tgatctctttcaaagtttctctcatgtaaaaaaaactgatgggaaatact
attttctatctgaatctttacatgaagggaggagagaggagatctgtaat
aaggttagctctggtcctgtgagc

gaattcttagttttgtattttcatgctcctgtctccacctcctcagtgct
ggggagcacgggtgtacagcactacagtagagcttatgtggtgctaaggg
ctgcaccctatcacctccctgatcaggtagctaggaaggaaatgtctggg
agcagggcgttacgccacatgtcttgaagagcaaggcccaatatggaagg
agaagaaaggtgcgcatcctgcatttgctgggtgagttcacttggaagag
aaagctattgattttggaagttgaggactggcactctctgggtgctaaga
taaaattatgttctcatcccaggaagttcacgttggctccagtctacaat
tgtctatccacagtgaaaaagaaaaaaaagaaaaacaagaaaaagacaaa
acagagctgtctgtatgtttctgcctttgcagtgagaagtggtagaggaa
tttatcagtgagacttgcacagcatgcaactcttgtagcctgagaaattc
tgatggtaagcagcatgcccttttctgctttcaaatcctctttgatgctg
gtaattcctgcatggagtaaacatacaagatgtgactgatgcctccttct
ggcctctaggagtaccaggcatgcttgtggttcagacacacttgcagaca
gaaacatacaaataaaaagcaacagcaacaaagtcgttctatgtcagcag
caccaggctccttcccgggaccctctgctaagcctgcagtgatgtgagga
ggaggactggcagaatggctttattcttcacatatgtaacatacctgatg
cttcagctcagttatttgtttttgacacaaagctatttcactctccgcaa
gtttctttaaatcttcattttcatctaggaaaaaagcacgggttacattt
tgcttaattgctgttgaattgctaatagattttccgtttgtgttaacaca
gctgaagtaaaaggaaaatgtttttcttgtctttcatagtgccactaatt
aaatatgatatatggcttttataagtatatagctataaaatgttttcctg
atgataaaagaaggtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_4374354_4375493
seq2: B6Ng01-291P07.b_47_1170

seq1  GAATTCTTCCCATTTTCATATCATGGCATTCAGAGAGAAACAATAGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCATTTTCATATCATGGCATTCAGAGAGAAACAATAGACTT  50

seq1  ACAGCAGAATAGAGATGCCTGCCAGGAATTGTCATTTTCTAGGGAATCGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGAATAGAGATGCCTGCCAGGAATTGTCATTTTCTAGGGAATCGG  100

seq1  GACCTCGGGACAACTATGTAAACCATTTGTAGCAAGTCAGTGCAAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCGGGACAACTATGTAAACCATTTGTAGCAAGTCAGTGCAAATGCT  150

seq1  AAGCACCATCTAAGCTCTCCATGCTGAGTGTCTCCCTTAGCAAATGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCATCTAAGCTCTCCATGCTGAGTGTCTCCCTTAGCAAATGCTCT  200

seq1  CAAGCATCGATAACTAATGTGTGAGATGCTTTGTTTCAAGTATTCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCGATAACTAATGTGTGAGATGCTTTGTTTCAAGTATTCACTCT  250

seq1  CCTCTTTAACAAAACCACCCAAAGATTGAGGAAACTCTTCAAGCTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTAACAAAACCACCCAAAGATTGAGGAAACTCTTCAAGCTCTCAT  300

seq1  TTCACATGTGTGCGTTTTCAGATTGTTAGAAGTAACAATTCCAAATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGTGTGCGTTTTCAGATTGTTAGAAGTAACAATTCCAAATCCTG  350

seq1  TTATACAGCAGGCCTCAACTACCAGCAGGGAGTGTATGCAAAGAAAGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGCAGGCCTCAACTACCAGCAGGGAGTGTATGCAAAGAAAGCTT  400

seq1  GCTAAAGACTGATATATTAGGACAATGTTACACATGGATAGTGTTTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGACTGATATATTAGGACAATGTTACACATGGATAGTGTTTGCTA  450

seq1  TCCTCCTCCCAGGAGGCATCTGTACATTCCTAGAGGGGAGTAAGGAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCCAGGAGGCATCTGTACATTCCTAGAGGGGAGTAAGGAAATG  500

seq1  TTGATTTACTTAAACTGGGCTTCTCTCTGCCTCTCTTACCTCTGAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTACTTAAACTGGGCTTCTCTCTGCCTCTCTTACCTCTGAGCCTC  550

seq1  ACTGGGCCAACTGCTCTAAACTGTCTTTATCACTGATTTTACCATATAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCCAACTGCTCTAAACTGTCTTTATCACTGATTTTACCATATAGT  600

seq1  CAGAGAACCTTGTTTACATCCAAGAACTCAGCATTTGAGTTACAAGGGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACCTTGTTTACATCCAAGAACTCAGCATTTGAGTTACAAGGGCG  650

seq1  ATGACAGCAGACCTTCAACAATCTGCATCTTTGCTTGGCTTCCTGTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGCAGACCTTCAACAATCTGCATCTTTGCTTGGCTTCCTGTGCTC  700

seq1  CAGGAGCTGAGAATGAATGGCCCTAAAAATCACT-GGGGTTTGGATACAG  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGGAGCTGAGAATGAATGGCCCTAAAAATCACTGGGGGTTTGGATACAG  750

seq1  GTCTCCACAGATCATTCTGGTAAATGTTTAGGGAATTTGTGTAGCAGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCACAGATCATTCTGGTAAATGTTTAGGGAATTTGTGTAGCAGAAA  800

seq1  GCCTGTGCTGTGACTGAATAAAATGGAAGCCAGGAAAATCAAGCCACAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGCTGTGACTGAATAAAATGGAAGCCAGGAAAATCAAGCCACAAG  850

seq1  ATAAAATTAATCTCAAGAGAATAAACTGCTTTTAGTGACATTATTGTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAATCTCAAGAGAATAAACTGCTTTTAGTGACATTATTGTATA  900

seq1  CCAAAATTAAATTATTCTGCTGATGTGTAAAGACAAAACAGAGACTTGAT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCAAAATTAAATTATTCTGCTGATGTGTAAAGAC-AAACAGAGACTTGAT  949

seq1  GGTCTAGAAATAACTTTCTTCCATTAGTTTGAATATCTTAGGTAAAATCC  999
      |||||||||||||| |||||||||||| ||||||||| ||||||||||||
seq2  GGTCTAGAAATAAC-TTCTTCCATTAG-TTGAATATC-TAGGTAAAATCC  996

seq1  TTAATTGATCTCTTTCAAAAGTTTCTCTTCATGTAAAAAAAAAACTGATG  1049
      |||| ||||||||||| |||||||||| ||||||  ||||||||||||||
seq2  TTAA-TGATCTCTTTC-AAAGTTTCTC-TCATGT--AAAAAAAACTGATG  1041

seq1  GAAATAACTATTTTCTAATCCTGAATGGTTTTTAACATGAAGAGAGGGAG  1099
      | ||  |||||||||||   |||||    | || |||||||| || ||||
seq2  GGAAATACTATTTTCTA--TCTGAA----TCTTTACATGAAGGGA-GGAG  1084

seq1  AGAAGGGAGATCTGTAATAAAGTTAGCTCT-GTCCTGTGAGC  1140
      |||  ||||||||||||||| ||||||||| |||||||||||
seq2  AGA--GGAGATCTGTAATAAGGTTAGCTCTGGTCCTGTGAGC  1124


seq1: chr10_4526233_4527310
seq2: B6Ng01-291P07.g_69_1135 (reverse)

seq1  TAACTTTCTTTTATCATCAGGAAAAAACATTTTTATAGCTATATACTTAT  50
      |||| |||||||||||||||||||| |   ||||||||||||||||||||
seq2  TAACCTTCTTTTATCATCAGGAAAACA---TTTTATAGCTATATACTTAT  47

seq1  AAAAACCATTATATCAATAATTTTAATTAGTGGCAACTATGAAAAGAACA  100
      |||| ||| |||||| |||  ||||||||||||| |||||||||   |||
seq2  AAAAGCCA-TATATC-ATA--TTTAATTAGTGGC-ACTATGAAA--GACA  90

seq1  AGAAAAACATTTTCCTTTTTACTTCAGCTGTGTTAACACAAACGGAAAAT  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAAAACATTTTCC-TTTTACTTCAGCTGTGTTAACACAAACGGAAAAT  139

seq1  CTATTAGCAATTCAACAGCAATTAAGCAAAATGTAACCCCTGCTTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTATTAGCAATTCAACAGCAATTAAGCAAAATGTAACCCGTGCTTTTTTC  189

seq1  CTAGATGAAAATGAAGATTTAAAGAAACTTGCGGAGAGTGAAATAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGAAAATGAAGATTTAAAGAAACTTGCGGAGAGTGAAATAGCTTT  239

seq1  GTGTCAAAAACAAATAACTGAGCTGAAGCATCAGGTATGTTACATATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAAAACAAATAACTGAGCTGAAGCATCAGGTATGTTACATATGTG  289

seq1  AAGAATAAAGCCATTCTGCCAGTCCTCCTCCTCACATCACTGCAGGCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGCCATTCTGCCAGTCCTCCTCCTCACATCACTGCAGGCTTA  339

seq1  GCAGAGGGTCCCGGGAAGGAGCCTGGTGCTGCTGACATAGAACGACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGTCCCGGGAAGGAGCCTGGTGCTGCTGACATAGAACGACTTTG  389

seq1  TTGCTGTTGCTTTTTATTTGTATGTTTCTGTCTGCAAGTGTGTCTGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTTGCTTTTTATTTGTATGTTTCTGTCTGCAAGTGTGTCTGAACC  439

seq1  ACAAGCATGCCTGGTACTCCTAGAGGCCAGAAGGAGGCATCAGTCACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCATGCCTGGTACTCCTAGAGGCCAGAAGGAGGCATCAGTCACATC  489

seq1  TTGTATGTTTACTCCATGCAGGAATTACCAGCATCAAAGAGGATTTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGTTTACTCCATGCAGGAATTACCAGCATCAAAGAGGATTTGAAA  539

seq1  GCAGAAAAGGGCATGCTGCTTACCATCAGAATTTCTCAGGCTACAAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAGGGCATGCTGCTTACCATCAGAATTTCTCAGGCTACAAGAGT  589

seq1  TGCATGCTGTGCAAGTCTCACTGATAAATTCCTCTACCACTTCTCACTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGTGCAAGTCTCACTGATAAATTCCTCTACCACTTCTCACTGC  639

seq1  AAAGGCAGAAACATACAGACAGCTCTGTTTTGTCTTTTTCTTGTTTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAAACATACAGACAGCTCTGTTTTGTCTTTTTCTTGTTTTTCT  689

seq1  TTTTTTTCTTTTTCACTGTGGATAGACAATTGTAGACTGGAGCCAACGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTTCACTGTGGATAGACAATTGTAGACTGGAGCCAACGTG  739

seq1  AACTTCCTGGGATGAGAACATAATTTTATCTTAGCACCCAGAGAGTGCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGGGATGAGAACATAATTTTATCTTAGCACCCAGAGAGTGCCA  789

seq1  GTCCTCAACTTCCAAAATCAATAGCTTTCTCTTCCAAGTGAACTCACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAACTTCCAAAATCAATAGCTTTCTCTTCCAAGTGAACTCACCCA  839

seq1  GCAAATGCAGGATGCGCACCTTTCTTCTCCTTCCATATTGGGCCTTGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCAGGATGCGCACCTTTCTTCTCCTTCCATATTGGGCCTTGCTC  889

seq1  TTCAAGACATGTGGCGTAACGCCCTGCTCCCAGACATTTCCTTCCTAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACATGTGGCGTAACGCCCTGCTCCCAGACATTTCCTTCCTAGCT  939

seq1  ACCTGATCAGGGAGGTGATAGGGTGCAGCCCTTAGCACCACATAAGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATCAGGGAGGTGATAGGGTGCAGCCCTTAGCACCACATAAGCTCT  989

seq1  ACTGTAGTGCTGTACACCCGTGCTCCCCAGCACTGAGGAGGTGGAGACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGTGCTGTACACCCGTGCTCCCCAGCACTGAGGAGGTGGAGACAG  1039

seq1  GAGCATGAAAATACAAAACTAAGAATTC  1078
      ||||||||||||||||||||||||||||
seq2  GAGCATGAAAATACAAAACTAAGAATTC  1067


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