BAC Information

Click to search

BAC

Clone NameB6Ng01-293A05
Chromosome10 (Build37)
Map Location 65,516,936 - 65,517,939
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293A05.bB6Ng01-293A05.g
ACCGA089501GA089502
length1,154904
definitionB6Ng01-293A05.b B6Ng01-293A05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagtttctgggctaatatccacttatcatgagtgcatatcatg
tgagttcttttgtgattgggttacctcacccaggatgatatcctccagat
ccatccatttgcctgaagctggactccagaaaattaaataaccccatttt
aaaaagaggcacagagttaaacaaagaattctcaactgaggaataccgaa
tggctgagaagcaactgaaaaaatgttcaacatctttattcatcaggaaa
atgaaaatcaaaacaaccctgagattccacctcacaacagcgagaatggc
taacatcaaaaattcaggtgacagcagatgctgtcgaggatgtggagaaa
gaggaacactcctccattgctggtgggattgcaagctggtacaaccactc
tggaaatcagtctggcagttccacagaaaattgggcatagtactactgga
ggatccagccatacatctcctgggcatatacccagaagatgttccaactg
gtgaggatgacacatggtccactatgttcatagcagccttatttataata
gccagaagctggaaagaacccagatgcccctcaacagaggaatggataca
gaaaatgtggtacgtttacacagtggagtactactcagctattagaaaat
ggtaccttcttatttcagaacttcagtagttttttttttccagaaaaaaa
attgaattaatttaaatgtaaaatggttgtcaaggcaatcacttcctatc
tttaacattataagatataaaatttttggattgcacaattttaggtttat
agacagatcctcagtgtaaacaataaatgatgaaaatgagtctctcactg
ggatgcaatttgacataattttgttacaagaagacaatttagatatcttc
atgtttcataattgaactctttcttttcaaatgtatacttgtgtgttgct
catttatttaatttttttcttcatttcccagattcattagaatatataat
ggaaataagaatacagaaagtgataaaaagtaaaaataaaatccagttgg
aattttatgggaattcctgggtgtgcaaactaatatgttctgtgttctcc
attggaattgagtgtcttctggcttccctcaaggtcttttcttgtttgat
gttt

gaattcttatatggtcctatgctgaggtcagttataagagtggtaaacat
ccttatatctgaagatgtctaaaattaggaatatactaggccatagggct
ctttaagctcttttagaattgtttgatttcccctttctctttctcttcag
agaaggataactctaccccttcaatcccctgtaccaacccactctggcac
atcaagtcatgtgaggattaggttcgtcttcccccactgaggccaggcaa
gggaggtcagctaggggaaatgagtccaaaggtaagcaacagaatctaag
ttagagatagcctcctctccaattattaggggacccatgtgaagactaca
ctgctcatctgctgcatatgtgtagggggcctaaatccagtctatgcatg
ctctttggctggtagttcagtctctctgtgagcctccatgagcccaggtt
agttgactttgtaggtcttcttatggtgtccatacccaaaagatgttcta
ttatacttcaaggacatctggtcaactatgttcatagcagctttatttgt
attggtcagaaattagaaacaacccagatgttcctcaactgaagaatgga
taaaaaatatggtacatctacacaatggaatgctatttaactattcaaaa
taaagacatcataaaatgtgtagccaaatggatggaactagaaaatatca
tcctgagtgaggtaacctatgaatacatcaactgtggattaaagagccta
tggcctatggcttagtcaggaagtagaaaggtaggacatttgaaggagaa
agaattctgggagagaaagaggtggggagattttcttggatggtatgatg
atccaaatgtatggtacctgagcacgcgttatctacccagtggtagatca
tatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65516936_65517939
seq2: B6Ng01-293A05.b_199_1201

seq1  AAAAGAGGCACAGAGTTAAACAAAGAATTCTCAACTGAGGAATACCGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGCACAGAGTTAAACAAAGAATTCTCAACTGAGGAATACCGAAT  50

seq1  GGCTGAGAAGCAACTGAAAAAATGTTCAACATCTTTATTCATCAGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAAGCAACTGAAAAAATGTTCAACATCTTTATTCATCAGGAAAA  100

seq1  TGAAAATCAAAACAACCCTGAGATTCCACCTCACAACAGCGAGAATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCAAAACAACCCTGAGATTCCACCTCACAACAGCGAGAATGGCT  150

seq1  AACATCAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGTGGAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGTGGAGAAAG  200

seq1  AGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACACTCCTCCATTGCTGGTGGGATTGCAAGCTGGTACAACCACTCT  250

seq1  GGAAATCAGTCTGGCAGTTCCACAGAAAATTGGGCATAGTACTACTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCAGTCTGGCAGTTCCACAGAAAATTGGGCATAGTACTACTGGAG  300

seq1  GATCCAGCCATACATCTCCTGGGCATATACCCAGAAGATGTTCCAACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAGCCATACATCTCCTGGGCATATACCCAGAAGATGTTCCAACTGG  350

seq1  TGAGGATGACACATGGTCCACTATGTTCATAGCAGCCTTATTTATAATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGACACATGGTCCACTATGTTCATAGCAGCCTTATTTATAATAG  400

seq1  CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG  450

seq1  AAAATGTGGTACGTTTACACAGTGGAGTACTACTCAGCTATTAGAAAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGTACGTTTACACAGTGGAGTACTACTCAGCTATTAGAAAATG  500

seq1  GTACCTTCTTATTTCAGAACTTCAGTAGTTTTTTTTTTCCAGAAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCTTATTTCAGAACTTCAGTAGTTTTTTTTTTCCAGAAAAAAAA  550

seq1  TTGAATTAATTTAAATGTAAAATGGTTGTCAAGGCAATCACTTCCTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAATTTAAATGTAAAATGGTTGTCAAGGCAATCACTTCCTATCT  600

seq1  TTAACATTATAAGATATAAAATTTTTGGATTGCACAATTTTAGGTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATTATAAGATATAAAATTTTTGGATTGCACAATTTTAGGTTTATA  650

seq1  GACAGATCCTCAGTGTAAACAATAAATGATGAAAATGAGTCTCTCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATCCTCAGTGTAAACAATAAATGATGAAAATGAGTCTCTCACTGG  700

seq1  GATGCAATTTGACATAATTTTGTTACAAGAAGACAATTTAGATATCTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAATTTGACATAATTTTGTTACAAGAAGACAATTTAGATATCTTCA  750

seq1  TGTTTCATAATTGAACTCTTTCTTTTCAAATGTATACTTGTGTGTTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATAATTGAACTCTTTCTTTTCAAATGTATACTTGTGTGTTGCTC  800

seq1  ATTTATTTAATTTTTTTCTTCATTTTCCCAGATTCATTAAGAATATTATA  850
      |||||||||||||||||||||| ||||||||||||||| |||||| ||||
seq2  ATTTATTTAATTTTTTTCTTCA-TTTCCCAGATTCATT-AGAATA-TATA  847

seq1  ATGGAAATAAG-ATACAGAAAGTGATAAAAAGTAAAAATAAAATCCAGTT  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAATAAGAATACAGAAAGTGATAAAAAGTAAAAATAAAATCCAGTT  897

seq1  TGGGAATTTTATGGG-ATTCCTGGGTGTGCAAACT-ATATG-TCTGTG-T  945
        ||||||||||||| ||||||||||||||||||| ||||| |||||| |
seq2  --GGAATTTTATGGGAATTCCTGGGTGTGCAAACTAATATGTTCTGTGTT  945

seq1  CTCCATT-GATATGAGTGTCTTCTGCTTTCCCTCAGGGTCTTTTTCTTGT  994
      ||||||| ||  |||||||||||||  |||||||| |||| |||||||||
seq2  CTCCATTGGAATTGAGTGTCTTCTGGCTTCCCTCAAGGTC-TTTTCTTGT  994

seq1  TTGGTTGTTT  1004
      || | |||||
seq2  TT-GATGTTT  1003


| Home | SequenceCutter | Blast | Download |