BAC Information

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BAC

Clone NameB6Ng01-293O24
Chromosome10 (Build37)
Map Location 103,593,095 - 103,695,996
singlet/doubletdoublet
Overlap geneEG627488, EG667692, EG667695, LOC100043292
Upstream geneLrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697, LOC667701
Downstream geneLOC100042383, Tmtc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293O24.bB6Ng01-293O24.g
ACCGA090196GA090197
length1,1561,132
definitionB6Ng01-293O24.b B6Ng01-293O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,694,846 - 103,695,996)(103,593,095 - 103,594,235)
sequence
gaattctcacctgaggaataccaaatggccgagaagtacctaaaaatgtt
caacatccttattcatcagggaaatgcaaatcaaaacaaccctgagattc
cacctcacaccagtcagaatggctaagttcaaaaattcaggtgacagcag
atgctgctgaggatgtagagaaagaggaacactcctccattgttggtggg
attgcaagcttgtacaacgactctggaaatcagtctggcggtttctcaga
aaattagacatagtactactggaggatccagcaatacctctcctgggcat
atgtccagaagatgttcctacaggtaagaaggaaacaaagaactttctca
agagtctcacgatgaagttcaagagattgttcttaacaagtacaggtaaa
ttttaaatcgatggaaaaatttaataaatgatgtaagtggaattatgtac
aaaattccattttaagaggggggatcaattttaaatgtagactacaagaa
tttccaaaaatatgtcatcagaaggtatttttcaatgtcagtaagtggag
ttagagaccaaactaactgagagatttttcacttacttgaaatcccactt
tccattccaatgtacacaatgataaaggagaaaatatcaattattttaat
cacctatgatatttgcagagacagtaataattttaccaccaactaattac
aaaaaaaataatgataatgttagcactggagccatgaaccagaaaccatg
gccaacggcatattggctgataattggtagaattaccataaagtgtttcc
aaaatttctttactctggcctagacttgcctatgtgctggagatttctgt
ctatattaatgatgcaaaaacttttctttgctttgaaggaatcaggagta
gattgaaaactaaagcttttcatttcctctgtgacctgagcttttaaaca
gaaatcaccttgacactgaataaatctgttcactacttctcatctatcaa
tcatatgcttatattattttaagtttaaactataaagtaaacaaataaca
agttctaaaggagggattagaagtttttaatattatttacttagttggaa
gaacaatacctaacaattagaaatagcttattattgtattaaaatgcaat
ttataa
gaattctctggaggctaaaaacattcatgttttaaacttaaactagtgtg
tgtgatgaactttcatgtctgtatgtacatgaaagttctcaagcatgagg
ctgatatgaaactgaagatgcctcacaatgggttacacattgtcattgat
cagaggtgacaatcatgcagacttttttttactccttattaccaattaaa
ttaccaaaaaaattaatttatcaaagatcttttgtgtcatgactatggat
aaaaataagtgcaaataataaaaatataagcatatacgtatttgtctaca
caggtatgatgatgtcaacaagtagttaaattaaaatatgtgtgatttta
tttcatagcttaaaatattcagtacaaatatttgagaaattgaataaaat
tcaaagtcaataaatgacacatgatgttaaccatcacaatagtatcactt
tttttaaaaaaaacttattgacattgaaacataaaacaatactggatgat
attatcatttgaacttttcagtttttattcagctgctgtaatattttgcc
tcaatttaaattttgtaattccttagtatgggttgatttgattatgagaa
gttgatattattataagaataacataagcaatagtatagtaagactggaa
gagttaacttcctatatgaaaagaaaattcggtattgcagtgtttatttg
ttagtaattttgactgatcctgggcattagaagcagatgtttaatgtaaa
gaaaaacttagaatctgtgtacaaggaacattaaagggctggatctgatt
tgtgagaagacatttaaaatgttctttatttttgtttggcaaattcattt
ttgaacaacttttgggccaatttgtcaattaggacttctctaataatttg
ctatcattcagtaacttctgattagttaaatagaatgaaaccttctgctt
tgttaaatgaaagatatgggtggaaatggccaaatatttactcagagagc
tcatgaacttagaatttaattaaatttatcatcatcttctatgattaaat
agtgtaacctaagttgggcacactatataatgtcctcaaattttccatct
gtatgtaccatcaggtactaggaattatcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103694846_103695996
seq2: B6Ng01-293O24.b_45_1200 (reverse)

seq1  TTATAAATTTTCAATATTATAC-ATAATAAACTA-TTCTAATTGT--AGT  46
      ||||||| || || | | |||| ||||||| ||| ||||||||||   ||
seq2  TTATAAA-TTGCATTTTAATACAATAATAAGCTATTTCTAATTGTTAGGT  49

seq1  A-TGTTCTTCAACTTAAGTAAATAATAT--AAAACTTCTAATCCCTCTTT  93
      | |||||||| |  ||||||||||||||  ||||||||||||||||| ||
seq2  ATTGTTCTTCCAACTAAGTAAATAATATTAAAAACTTCTAATCCCTCCTT  99

seq1  AGGAACTTTGTATTTGTTTTACTTTATAGTTTAAACTTAAAATTAATATA  143
        ||||||  |||||| ||||||||||||||||||||||||| |||||||
seq2  TAGAACTTGTTATTTG-TTTACTTTATAGTTTAAACTTAAAA-TAATATA  147

seq1  AGCATTATGATTGATAGATGAGAAGTAGTGAACAGATTTATTCAGTGTC-  192
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCA-TATGATTGATAGATGAGAAGTAGTGAACAGATTTATTCAGTGTCA  196

seq1  AGGTGATTTCTGTTTAAAAGCTCAGGTCACAGAGGAAATG-AAAGCTTTA  241
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGGTGATTTCTGTTTAAAAGCTCAGGTCACAGAGGAAATGAAAAGCTTTA  246

seq1  GTTTTCAATCTACTCCTGATTCCTTCAAAGCAAAGAAAAGTTTTTGCATC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAATCTACTCCTGATTCCTTCAAAGCAAAGAAAAGTTTTTGCATC  296

seq1  ATTAATATAGACAGAAATCTCCAGCACATAGGCAAGTCTAGGCCAGAGTA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATAGACAGAAATCTCCAGCACATAGGCAAGTCTAGGCCAGAGTA  346

seq1  AAGAAATTTTGGAAACACTTTATGGTAATTCTACCAATTATCAGCCAATA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTTTGGAAACACTTTATGGTAATTCTACCAATTATCAGCCAATA  396

seq1  TGCCGTTGGCCATGGTTTCTGGTTCATGGCTCCAGTGCTAACATTATCAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTTGGCCATGGTTTCTGGTTCATGGCTCCAGTGCTAACATTATCAT  446

seq1  TATTTTTTTTGTAATTAGTTGGTGGTAAAATTATTACTGTCTCTGCAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTGTAATTAGTTGGTGGTAAAATTATTACTGTCTCTGCAAAT  496

seq1  ATCATAGGTGATTAAAATAATTGATATTTTCTCCTTTATCATTGTGTACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGTGATTAAAATAATTGATATTTTCTCCTTTATCATTGTGTACA  546

seq1  TTGGAATGGAAAGTGGGATTTCAAGTAAGTGAAAAATCTCTCAGTTAGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATGGAAAGTGGGATTTCAAGTAAGTGAAAAATCTCTCAGTTAGTT  596

seq1  TGGTCTCTAACTCCACTTACTGACATTGAAAAATACCTTCTGATGACATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCTAACTCCACTTACTGACATTGAAAAATACCTTCTGATGACATA  646

seq1  TTTTTGGAAATTCTTGTAGTCTACATTTAAAATTGATCCCCCCTCTTAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAAATTCTTGTAGTCTACATTTAAAATTGATCCCCCCTCTTAAA  696

seq1  ATGGAATTTTGTACATAATTCCACTTACATCATTTATTAAATTTTTCCAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTTTGTACATAATTCCACTTACATCATTTATTAAATTTTTCCAT  746

seq1  CGATTTAAAATTTACCTGTACTTGTTAAGAACAATCTCTTGAACTTCATC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTAAAATTTACCTGTACTTGTTAAGAACAATCTCTTGAACTTCATC  796

seq1  GTGAGACTCTTGAGAAAGTTCTTTGTTTCCTTCTTACCTGTAGGAACATC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTCTTGAGAAAGTTCTTTGTTTCCTTCTTACCTGTAGGAACATC  846

seq1  TTCTGGACATATGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAGTACTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACATATGCCCAGGAGAGGTATTGCTGGATCCTCCAGTAGTACTA  896

seq1  TGTCTAATTTTCTGAGAAACCGCCAGACTGATTTCCAGAGTCGTTGTACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATTTTCTGAGAAACCGCCAGACTGATTTCCAGAGTCGTTGTACA  946

seq1  AGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCTACATCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCTACATCC  996

seq1  TCAGCAGCATCTGCTGTCACCTGAATTTTTGAACTTAGCCATTCTGACTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCATCTGCTGTCACCTGAATTTTTGAACTTAGCCATTCTGACTG  1046

seq1  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGAAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGAAT  1096

seq1  AAGGATGTTGAACATTTTTAGGTACTTCTCGGCCATTTGGTATTCCTCAG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGTTGAACATTTTTAGGTACTTCTCGGCCATTTGGTATTCCTCAG  1146

seq1  GTGAGAATTC  1151
      ||||||||||
seq2  GTGAGAATTC  1156

seq1: chr10_103593095_103594235
seq2: B6Ng01-293O24.g_67_1198

seq1  GAATTCTCTGGAGGCTAAAAACATTCATGTTTTAAACTTAAACTAGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGGCTAAAAACATTCATGTTTTAAACTTAAACTAGTGTG  50

seq1  TGTGATGAACTTTCATGTCTGTATGTACATGAAAGTTCTCAAGCATGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAACTTTCATGTCTGTATGTACATGAAAGTTCTCAAGCATGAGG  100

seq1  CTGATATGAAACTGAAGATGCCTCACAATGGGTTACACATTGTCATTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGAAACTGAAGATGCCTCACAATGGGTTACACATTGTCATTGAT  150

seq1  CAGAGGTGACAATCATGCAGACTTTTTTTTACTCCTTATTACCAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTGACAATCATGCAGACTTTTTTTTACTCCTTATTACCAATTAAA  200

seq1  TTACCAAAAAAATTAATTTATCAAAGATCTTTTGTGTCATGACTATGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAAAAAATTAATTTATCAAAGATCTTTTGTGTCATGACTATGGAT  250

seq1  AAAAATAAGTGCAAATAATAAAAATATAAGCATATACGTATTTGTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGTGCAAATAATAAAAATATAAGCATATACGTATTTGTCTACA  300

seq1  CAGGTATGATGATGTCAACAAGTAGTTAAATTAAAATATGTGTGATTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGATGATGTCAACAAGTAGTTAAATTAAAATATGTGTGATTTTA  350

seq1  TTTCATAGCTTAAAATATTCAGTACAAATATTTGAGAAATTGAATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGCTTAAAATATTCAGTACAAATATTTGAGAAATTGAATAAAAT  400

seq1  TCAAAGTCAATAAATGACACATGATGTTAACCATCACAATAGTATCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCAATAAATGACACATGATGTTAACCATCACAATAGTATCACTT  450

seq1  TTTTTAAAAAAAACTTATTGACATTGAAACATAAAACAATACTGGATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAAAACTTATTGACATTGAAACATAAAACAATACTGGATGAT  500

seq1  ATTATCATTTGAACTTTTCAGTTTTTATTCAGCTGCTGTAATATTTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATTTGAACTTTTCAGTTTTTATTCAGCTGCTGTAATATTTTGCC  550

seq1  TCAATTTAAATTTTGTAATTCCTTAGTATGGGTTGATTTGATTATGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTAAATTTTGTAATTCCTTAGTATGGGTTGATTTGATTATGAGAA  600

seq1  GTTGATATTATTATAAGAATAACATAAGCAATAGTATAGTAAGACTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTATTATAAGAATAACATAAGCAATAGTATAGTAAGACTGGAA  650

seq1  GAGTTAACTTCCTATATGAAAAGAAAATTCGGTATTGCAGTGTTTATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAACTTCCTATATGAAAAGAAAATTCGGTATTGCAGTGTTTATTTG  700

seq1  TTAGTAATTTTGACTGATCCTGGGCATTAGAAGCAGATGTTTAATGTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATTTTGACTGATCCTGGGCATTAGAAGCAGATGTTTAATGTAAA  750

seq1  GAAAAACTTAGAATCTGTGTACAAGGAACATTAAAGGGCTGGATCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACTTAGAATCTGTGTACAAGGAACATTAAAGGGCTGGATCTGATT  800

seq1  TGTGAGAAGACATTTAAAATGTTCTTTATTTTTGTTTGGCAAATTCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAGACATTTAAAATGTTCTTTATTTTTGTTTGGCAAATTCATTT  850

seq1  TTGAACAACTTTTGGGCCAA-TTGTCAATTAGGACTTCTCTAATAATTTG  899
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGAACAACTTTTGGGCCAATTTGTCAATTAGGACTTCTCTAATAATTTG  900

seq1  CTATCATTCAGTAACTTCTGATTAGTTAAATAGAATG-AACCTTCTGCTT  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTATCATTCAGTAACTTCTGATTAGTTAAATAGAATGAAACCTTCTGCTT  950

seq1  TGTTAAAATGAAAGATATGGGTGGAAATGGCCAAATATTTAACTCAGAAG  998
      |||| ||||||||||||||||||||||||||||||||||| |||||| ||
seq2  TGTT-AAATGAAAGATATGGGTGGAAATGGCCAAATATTT-ACTCAG-AG  997

seq1  AGCTCATGAAACTAGAAATTAATTAAAATTTATTAATCCATCTTCTATGA  1048
      ||||||||||  ||||| |||||| |||||||| |   ||||||||||||
seq2  AGCTCATGAACTTAGAATTTAATT-AAATTTATCA--TCATCTTCTATGA  1044

seq1  TTTAATAGTGTAACTAAAATTTTGGCACAATTATA-AATGTTCTCAAATT  1097
      || |||||||||||   || || ||||| | |||| ||||| ||||||||
seq2  TTAAATAGTGTAAC-CTAAGTTGGGCAC-ACTATATAATGTCCTCAAATT  1092

seq1  TTTCCAACCTGTATGTACCATCAAAGTACCCAGATATTATCATC  1141
      ||  | | |||||||||||||| | ||| | ||  |||||||||
seq2  TT--CCATCTGTATGTACCATC-AGGTA-CTAGGAATTATCATC  1132