BAC Information

Click to search

BAC

Clone NameB6Ng01-294G05
Chromosome10 (Build37)
Map Location 9,782,740 - 9,783,848
singlet/doubletsinglet
Overlap geneLOC100039238
Upstream geneEG666625, LOC666636, E130306M17Rik, LOC666658, LOC620417, Stxbp5
Downstream geneLOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294G05.bB6Ng01-294G05.g
ACCGA090529GA090530
length1,1681,111
definitionB6Ng01-294G05.b B6Ng01-294G05.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctatgtatcccgtttttaatagggttatttcatcc
tctagagtctaacttcttgagtgctttgtatatattagatagcagccctc
tattggatgtagggttggaaagattcttttcccaatctgttggttgctgt
tttgtcctattgacagtgtccattgccttaaagaagctttgtaattttat
gaagtcccacttgtcaatttttgatcttagagcataagctattggtgttc
tgttcaggaaattctcccctgtgtccatgtggtcaaggctcttccccact
ttcttttcttttagtttcagtgtctctggttttatgtggaggttctatat
ccacttggacttgagtgttgtacaaggaattaagaatgaatgtgtttgtc
tttgacactgaggtgtgtttcctgtatgcagcaaaatgctgtgtcctgtt
tacaaatccagacttttactctgtctttttatttggggattgagtccatt
gatgttaagagatattagtcaatagtgatttttttttttgcttactgtta
ttttttatgttatttttatgtgtgtgtggttatcatcatttgagtttatt
gaaagattactttcttgctttttctagggtgtagtttacctccttgtgtt
ggtgttttccatctattatcctttgtagggctggatttgtggaaagatat
tgtgcaaatttgattttgtcatggaatatcttgttttcttcctgtatggt
aactgagagtttcactggttatagtagcctgggctggcatttatgttctc
ttagagtctgtatgacatctgcccaggattttctagatttcatagtctct
ggtgagaagtcggtgtaattctgataggtctgcctttatatgttacttga
catgtttcccttactgctttaatattctttctttgtttgtgcatttggta
ttttgactaatgtgtgatgggaggaattccatttctgattcatctatttt
ggagttctgtaaggcttcttatatggttatgtggcatctctttcgtagta
aggactttctctaattttgttaagaaaattactgctcttaaatgtatctt
cacctccttctaattccgtgcctagctgctgcatggtggaatctgaagtt
tctaagctaagagagcct

gaattcaaactccttgttagtgacatcatgttcctctcccaggtgtgagt
tgggtaaacttgacagctccaacaatgacggctcaagggcagctctagga
gctacattgacccagctttctgagttcattattacatgtcaggcaagtgg
catcttgggaagtaatcgtgcctctttgattctgttgccaaggcctttaa
cctttgtatatgtaatagatttcaaaattaagcattagttgtttagctga
gcaaggtctatgtctacacagtactgcttagtacaaggtacccaaggtat
tgaatatagccaccttcatttgctgccccaaatatccactacgttcagga
gcagatgtttacagctggcagatttattgaacctacaggcttatttgctt
tcttaggctgtcagtcctcctgtgccttcttcacttttggcagagttttt
tttttttttttttcagtattgcttatgaaatctggctccctggcttggaa
tcacattttccgattttactgagagaacatggcacacagagcataggaaa
tgcatcgatgaaggagacagcaagtgctgcgatagaagagaaaatgttta
cagatttctaaaatttctcaagtctaagctttccattgtaaatctggaag
cccccaaaggtgtactaggtgggtgtttatttattgtactccttgctttc
aagtgcttggtagataggtgggaagatttgcaggaagttttatgattaga
gttagattaataaaacaagtttatctgataagtacatagcaatagtattt
tatatggtagctactttgctcaagtgcatatgtgctcatacacagacaca
tagtcacacacttagatgtacatatacacgtgcacactcacacaaactca
catgggcatgaatatttgcattctctatcacacatgcatacattatacac
atatatacacacacactacacacaaacatatacacacatggacacatact
tgcaacatacattctcattatatcatgcataatacaccctcacatgcata
taatacctcagattatacctcacacaccacctcacaaaccaaccatgcag
cagttctcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9782740_9783848
seq2: B6Ng01-294G05.g_65_1175

seq1  GAATTCAAACTCCTTGTTAGTGACATCATGTTCCTCTCCCAGGTGTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTCCTTGTTAGTGACATCATGTTCCTCTCCCAGGTGTGAGT  50

seq1  TGGGTAAACTTGACAGCTCCAACAATGACGGCTCAAGGGCAGCTCTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAACTTGACAGCTCCAACAATGACGGCTCAAGGGCAGCTCTAGGA  100

seq1  GCTACATTGACCCAGCTTTCTGAGTTCATTATTACATGTCAGGCAAGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATTGACCCAGCTTTCTGAGTTCATTATTACATGTCAGGCAAGTGG  150

seq1  CATCTTGGGAAGTAATCGTGCCTCTTTGATTCTGTTGCCAAGGCCTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGGGAAGTAATCGTGCCTCTTTGATTCTGTTGCCAAGGCCTTTAA  200

seq1  CCTTTGTATATGTAATAGATTTCAAAATTAAGCATTAGTTGTTTAGCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTATATGTAATAGATTTCAAAATTAAGCATTAGTTGTTTAGCTGA  250

seq1  GCAAGGTCTATGTCTACACAGTACTGCTTAGTACAAGGTACCCAAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGTCTATGTCTACACAGTACTGCTTAGTACAAGGTACCCAAGGTAT  300

seq1  TGAATATAGCCACCTTCATTTGCTGCCCCAAATATCCACTACGTTCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATAGCCACCTTCATTTGCTGCCCCAAATATCCACTACGTTCAGGA  350

seq1  GCAGATGTTTACAGCTGGCAGATTTATTGAACCTACAGGCTTATTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGTTTACAGCTGGCAGATTTATTGAACCTACAGGCTTATTTGCTT  400

seq1  TCTTAGGCTGTCAGTCCTCCTGTGCCTTCTTCACTTTTGGCAGAGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGGCTGTCAGTCCTCCTGTGCCTTCTTCACTTTTGGCAGAGTTTTT  450

seq1  TTTTTTTTTTTTTCAGTATTGCTTATGAAATCTGGCTCCCTGGCTTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTCAGTATTGCTTATGAAATCTGGCTCCCTGGCTTGGAA  500

seq1  TCACATTTTCCGATTTTACTGAGAGAACATGGCACACAGAGCATAGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTTTCCGATTTTACTGAGAGAACATGGCACACAGAGCATAGGAAA  550

seq1  TGCATCGATGAAGGAGACAGCAAGTGCTGCGATAGAAGAGAAAATGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCGATGAAGGAGACAGCAAGTGCTGCGATAGAAGAGAAAATGTTTA  600

seq1  CAGATTTCTAAAATTTCTCAAGTCTAAGCTTTCCATTGTAAATCTGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTAAAATTTCTCAAGTCTAAGCTTTCCATTGTAAATCTGGAAG  650

seq1  CCCCCAAAGGTGTACTAGGTGGGTGTTTATTTATTGTACTCCTTGCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAAGGTGTACTAGGTGGGTGTTTATTTATTGTACTCCTTGCTTTC  700

seq1  AAGTGCTTGGTAGATAGGTGGGAAGATTTGCAGGAAGTTTTATGATTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTGGTAGATAGGTGGGAAGATTTGCAGGAAGTTTTATGATTAGA  750

seq1  GTTAGATTAATAAAACAAGTTTATCTGATAAGTACATAGCAATAGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGATTAATAAAACAAGTTTATCTGATAAGTACATAGCAATAGTATTT  800

seq1  TATATGGTAGCTACTTTGCTCAAGTGCATATGTGCTCATACACAGACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGTAGCTACTTTGCTCAAGTGCATATGTGCTCATACACAGACACA  850

seq1  TAGTCACACACTTAGATGTACATATACACGTGCACACTCACACAAACTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACACACTTAGATGTACATATACACGTGCACACTCACACAAACTCA  900

seq1  CATGGGCATGAATATTTGCATTCTCTATCACACATGCATACAATTATACA  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATGGGCATGAATATTTGCATTCTCTATCACACATGCATAC-ATTATACA  949

seq1  CATATATACACACACACTAACACACAAACATATACACACATGGACACATA  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CATATATACACACACACT-ACACACAAACATATACACACATGGACACATA  998

seq1  CTTGC-ACATACATTCTCAATTATATCCATGCAT-ATACACCCTCACATG  1048
      ||||| |||||||||||| ||||||| ||||||| |||||||||||||||
seq2  CTTGCAACATACATTCTC-ATTATAT-CATGCATAATACACCCTCACATG  1046

seq1  CATAT-ATA-CTCAGA-TATA-CTCACACAC--ACTCACAAACACAAACA  1092
      ||||| ||| |||||| |||| |||||||||   ||||||||| ||| ||
seq2  CATATAATACCTCAGATTATACCTCACACACCACCTCACAAAC-CAACCA  1095

seq1  TGCAGCAGTTTCTCCTG  1109
      |||||||| ||||||||
seq2  TGCAGCAG-TTCTCCTG  1111


| Home | SequenceCutter | Blast | Download |