BAC Information

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BAC

Clone NameB6Ng01-294J07
Chromosome7 (Build37)10 (Build37)
Map Location 100,456,464 - 100,457,217108,608,931 - 108,609,439
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDlg2, Ccdc90b, Ankrd42, Pcf11, LOC676240, LOC100040007, 4632427E13Rik, Rab30, 4632434I11Rik, Prcp, A830059I20Rik, LOC100040298
Downstream geneLOC666783, EG638305, EG545982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J07.bB6Ng01-294J07.g
ACCGA090672GA090673
length759464
definitionB6Ng01-294J07.b B6Ng01-294J07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(100,456,464 - 100,457,217)(108,608,931 - 108,609,439)
sequence
gaattcccaggcaaaaatgtggagataaataaggatttagagttactaga
atgtggtaaagtgatgccatagggtatggcaatagaatgagcagagatca
agaactgggaattcatttcaaaagcctagtactatccacaatagaggata
gacccttgagagagatggctctattttatgctagactgtacattttaatt
tactattatcatatattattgttataatgcatctttagtgttgctactgg
tctcagctggtttaagtattaaagaagaaagggttgctgtgagaacagta
agacataccactgaccccaacggaggacttagagaaaggactgaaggaga
tgaaggggtttgcaaccccataggaataacaacaatataaaccaaccaga
ccccccagagtttccagggactaaatcaccaaccaaggagtacacgtgga
gggacccgtggctccagctgcatatgtagcagaggatggccttgtcggac
atcaatgggaggggagacgtttagttctgtgaaggcttgaagccccagag
taggggaattcgagggcagaaaggtgggtgtgggtgggaggaggaacacc
ctcatagaagaaggaggatggggatggaaatagggggctttcagggggat
aacattttgaaatgtaaataaagaaaatatccaataaaaaaaaagaaaat
gaggatattccactaacaataaaaggacgatagataaagttagggggtat
ttaaaatat

cccatgtatactctttggttggtggtttagctgctgggagctttggggga
gagggtctggttggttgatattgttgttcttaatggggttgcaaaccctt
cagctccttcagtccttcttctaactcctcctttggggtccctgtgctta
atccaatggttggctgcaagcatccgcatctgtatcataaggataaagag
acatccatattaggctcctgtcagcaagcactttttattattattattaa
ttaggtattttcttcatttacatttccaatgctaccccataagtccccca
aaccctcccccctcccctcttgtgactgggtttggtggttgcatatggga
tgaatccccatgtggggcagtctctggatggcctttacttcagtctctgt
tccactctttgtacctgtatttcttttagacaggagcaattctagcttaa
aattttgagatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_100456464_100457217
seq2: B6Ng01-294J07.b_48_806

seq1  GAATTCCCAGGCAAAAATGTGGAGATAAATAAGGATTTAGAGTTACTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGGCAAAAATGTGGAGATAAATAAGGATTTAGAGTTACTAGA  50

seq1  ATGTGGTAAAGTGATGCCATAGGGTATGGCAATAGAATGAGCAGAGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTAAAGTGATGCCATAGGGTATGGCAATAGAATGAGCAGAGATCA  100

seq1  AGAACTGGGAATTCATTTCAAAAGCCTAGTACTATCCACAATAGAGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGGGAATTCATTTCAAAAGCCTAGTACTATCCACAATAGAGGATA  150

seq1  GACCCTTGAGAGAGATGGCTCTATTTTATGCTAGACTGTACATTTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTGAGAGAGATGGCTCTATTTTATGCTAGACTGTACATTTTAATT  200

seq1  TACTATTATCATATATTATTGTTATAATGCATCTTTAGTGTTGCTACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTATCATATATTATTGTTATAATGCATCTTTAGTGTTGCTACTGG  250

seq1  TCTCAGCTGGTTTAAGTATTAAAGAAGAAAGGGTTGCTGTGAGAACAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGGTTTAAGTATTAAAGAAGAAAGGGTTGCTGTGAGAACAGTA  300

seq1  AGACATACCACTGACCCCAACGGAGGACTTAGAGAAAGGACTGAAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCACTGACCCCAACGGAGGACTTAGAGAAAGGACTGAAGGAGA  350

seq1  TGAAGGGGTTTGCAACCCCATAGGAATAACAACAATATAAACCAACCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGTTTGCAACCCCATAGGAATAACAACAATATAAACCAACCAGA  400

seq1  CCCCCCAGAGTTTCCAGGGACTAAATCACCAACCAAGGAGTACACGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGAGTTTCCAGGGACTAAATCACCAACCAAGGAGTACACGTGGA  450

seq1  GGGACCCGTGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCGTGGCTCCAGCTGCATATGTAGCAGAGGATGGCCTTGTCGGAC  500

seq1  ATCAATGGGAGGGGAGACGTTTAGTTCTGTGAAGGCTTGAAGCCCCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGGAGGGGAGACGTTTAGTTCTGTGAAGGCTTGAAGCCCCAGAG  550

seq1  TAGGGGAATTCGAGGGCAGAAAGGTGGGTGTGGGTGGGAGGAGGAACACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAATTCGAGGGCAGAAAGGTGGGTGTGGGTGGGAGGAGGAACACC  600

seq1  CTCATAGAAGAAGGAGGATGGGGATGG-AATAGGGGGC-TTCAGGGGGAT  648
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTCATAGAAGAAGGAGGATGGGGATGGAAATAGGGGGCTTTCAGGGGGAT  650

seq1  AACA-TTTGAAATGTAAATAAAGAAAATATCCAAT-AAAAAAAAGAAAAA  696
      |||| |||||||||||||||||||||||||||||| ||||||||||||| 
seq2  AACATTTTGAAATGTAAATAAAGAAAATATCCAATAAAAAAAAAGAAAAT  700

seq1  GAGGATATACCACTAACAAATAAAAGGA-GATAGATAAAG-TAAGGGGTA  744
      |||||||| |||||||| |||||||||| ||||||||||| || ||||||
seq2  GAGGATATTCCACTAAC-AATAAAAGGACGATAGATAAAGTTAGGGGGTA  749

seq1  TTTAGAATAT  754
      |||| |||||
seq2  TTTAAAATAT  759


seq1: chr10_108608931_108609439
seq2: B6Ng01-294J07.g_320_534 (reverse)

seq1  CCTATCTCAAAATTTTAAAAATACTTTATGCTCAAAAATTATCTTACACC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ACATTTTGTTACTTTAAATGATTTTTAAACCAAAAAGTTAAGAAAAAAAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTGCTGAAAGGACCCAGATATAGCTGTCACTTGTGAGACTATGCCGGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  GCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGGCCCCCAATGGAGGAACTAGAGAAAGCACCCAAGGAGCTAAAGGGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGA  300
              |||||        ||| ||| | | || |  | | | || | 
seq2  --------CCTAT------CTCAAAATTTTAAGCT-AGAATTGCTCCTG-  34

seq1  GCTCT----TGACTCTAGCTGCATA---TGTATCAAAAGATGGCCTAGTG  343
        |||      | |  || | || |   || | || |   ||   ||   
seq2  --TCTAAAAGAAATACAGGTACAAAGAGTGGAACAGAGACTGAAGTA-AA  81

seq1  GGCCATCACTGCAAAGAGAGGCCCA-TTGGACATGCAAACTTTATATGC-  391
      |||||||    || |||  | ||||  |||  || ||  |   |||||| 
seq2  GGCCATC----CAGAGACTGCCCCACATGGGGATTCATCC--CATATGCA  125

seq1  CCCAGTACAGGGGAACGCCAGGGCCTAAAAGGGGGAGTGGGTGGGTAGGG  441
       |||  |      ||| ||||    | | | |              ||||
seq2  ACCACCA------AAC-CCAG----TCACAAG--------------AGGG  150

seq1  GAGTGGGGGGATGGGTATGGGGGACTTTTGGGATAGCATTGGAAATGTAA  491
      ||  ||||||| |||| |||||||||| |||| |||||||||||||||||
seq2  GA--GGGGGGA-GGGTTTGGGGGACTTATGGGGTAGCATTGGAAATGTAA  197

seq1  ACGAGGAAAATACCTAAT  509
      | || |||||||||||||
seq2  ATGAAGAAAATACCTAAT  215


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