BAC Information

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BAC

Clone NameB6Ng01-294J20
Chromosome10 (Build37)
Map Location 80,371,972 - 80,524,535
singlet/doubletdoublet
Overlap geneLmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta
Upstream geneC030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13
Downstream geneThop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294J20.bB6Ng01-294J20.g
ACCGA090698GA090699
length1,1711,104
definitionB6Ng01-294J20.b B6Ng01-294J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,371,972 - 80,373,154)(80,523,406 - 80,524,535)
sequence
gaattctccactcagcacaagccagggcccgtgtttagacagccactcta
caatgacaacattctcctgccattgtcctggggggatcttcagctgccca
acaaacaccgttcagaaccttcgagacttctgatgagggatacactttgt
gaccccctcacccaaaggggcactcggggaggctaaggaaacagtgaggg
atcttgggcctgctctccctagggcagcaagtctgcaaagcacagcctca
gaggggtctcactgccagcccaaggagccatggtctgaacaagcgtgtgc
acggtcaggccatttgcagctgctgcaggctggtggccatatggccccat
ttcaacaccacagtcattctgtccctggtttctggggctcttggtcccct
gggaggccagcacttgtggagcctcggccacggcctttctgtttttctct
gcttgtgtgtactatgttcatgcatgcgcacgtgtgaaggcagaggtctg
aattcaacatgggggaccttccttgatcgctctccattttcttggtggag
gtgggtatctcgcttgtcgctgtggctagtcttctaatcagcttactctg
aggagacctgtccccatcgccctgtcccattgcgggacaagcactccacg
caccaaggtgagtccctggcctgagcacccacctcttcctggcctcctct
agctcagcctgcacctttccaatttcaatctgcagccgggcacgttcacg
ggccgtctcatccagtacccgtcgggcgtcagccagctctgactcgtaca
gggtcttgatgccactcacctggggagacagggcagggggtgacaatggg
aacacaggactatcctatgtcgaccctatgacactgtcttatgacagagg
agtctaggtggtctttctggaaggatccatcttcccttttccacaattcg
gcctgacagatcaggcacaggacccttaagctgggtgggaagtgtagcca
aagctagcccacttggcaccattggctcaggccttacatctcagctaggg
gacatccctgccaacccacctgccacctgtgcagcagaacacccgggcat
ccacatggccaagtctagatctgcttaatgtgttcttttccagctcagta
cgagatgcagtatccaagcgc
gaattccataaatttaaggtcaacctgagctacatagtaagacatggtaa
aatgaaaataggagagatagttcaatggttaagagtacatattgcaaact
gggtagtgcagttttagcccaaccttgcctacggtatgagaccctgtctc
aaagaaaataaaaaaagtagagtacatacagcttttgcagagggcctgaa
ttgcactgcacccaactctagccttggggattccatgccctcttctgatt
tttataggcactgtattcccatgcagacacccacacatagacatccacat
aattcaaaagtaaagataagttggttttatttatttttatttattaattt
tttttttggtttttcgagacagggtttctctgtatagccctggctgtcct
ggaactcactttgtagagcaggctggcctggaactcagaaatctgcctgc
ctctggctcccgagtgctgggattaaaggcgtgcgctaccacgcccgacc
tgtttttatttttatttttatttttttatttatttttggttttttgagac
agggtttctctgtgtagccctggctgtcctggaactcgctctgtagacca
ggctggcctcgaactcatcccgagtgctgggattaaaggcgtgggccacc
acgcccggctcctgtttttattttttgagacaggtttttctgtgtagctt
tggctatcctttgtagacaaggcttgcctcaaactcaccgcgattccccc
gcctctccagtgctgagattaaaggcgagcaccaccactgtctggctgct
aatctttgtttttcttttaggcatcagaaagaagttggggtgtgcaaaag
ataagtttgtaaataggttttaaatataaaaataagtgaagtagattgtt
tagtggttaatcacacttactgctttcacagaaagtggatatgcagtttt
cagatgggcgagtggatgagagttcggcaggctggctcgtagtatgtcat
ttaaaaagaaaagaaaaaaaaattacgaaacaggggctgtgagatgcctc
agcagtagagacctgactgctcttccaagtctggagttcaattcagcacc
acat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80371972_80373154
seq2: B6Ng01-294J20.b_47_1217

seq1  GAATTCTCCACTCAGCACAAGCCAGGGCCCGTGTTTAGACAGCCACTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACTCAGCACAAGCCAGGGCCCGTGTTTAGACAGCCACTCTA  50

seq1  CAATGACAACATTCTCCTGCCATTGTCCTGGGGGGATCTTCAGCTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACAACATTCTCCTGCCATTGTCCTGGGGGGATCTTCAGCTGCCCA  100

seq1  ACAAACACCGTTCAGAACCTTCGAGACTTCTGATGAGGGATACACTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCGTTCAGAACCTTCGAGACTTCTGATGAGGGATACACTTTGT  150

seq1  GACCCCCTCACCCAAAGGGGCACTCGGGGAGGCTAAGGAAACAGTGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCTCACCCAAAGGGGCACTCGGGGAGGCTAAGGAAACAGTGAGGG  200

seq1  ATCTTGGGCCTGCTCTCCCTAGGGCAGCAAGTCTGCAAAGCACAGCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGGCCTGCTCTCCCTAGGGCAGCAAGTCTGCAAAGCACAGCCTCA  250

seq1  GAGGGGTCTCACTGCCAGCCCAAGGAGCCATGGTCTGAACAAGCGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCTCACTGCCAGCCCAAGGAGCCATGGTCTGAACAAGCGTGTGC  300

seq1  ACGGTCAGGCCATTTGCAGCTGCTGCAGGCTGGTGGCCATATGGCCCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGTCAGGCCATTTGCAGCTGCTGCAGGCTGGTGGCCATATGGCCCCAT  350

seq1  TTCAACACCACAGTCATTCTGTCCCTGGTTTCTGGGGCTCTTGGTCCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACCACAGTCATTCTGTCCCTGGTTTCTGGGGCTCTTGGTCCCCT  400

seq1  GGGAGGCCAGCACTTGTGGAGCCTCGGCCACGGCCTTTCTGTTTTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCAGCACTTGTGGAGCCTCGGCCACGGCCTTTCTGTTTTTCTCT  450

seq1  GCTTGTGTGTACTATGTTCATGCATGCGCACGTGTGAAGGCAGAGGTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTGTACTATGTTCATGCATGCGCACGTGTGAAGGCAGAGGTCTG  500

seq1  AATTCAACATGGGGGACCTTCCTTGATCGCTCTCCATTTTCTTGGTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAACATGGGGGACCTTCCTTGATCGCTCTCCATTTTCTTGGTGGAG  550

seq1  GTGGGTATCTCGCTTGTCGCTGTGGCTAGTCTTCTAATCAGCTTACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTATCTCGCTTGTCGCTGTGGCTAGTCTTCTAATCAGCTTACTCTG  600

seq1  AGGAGACCTGTCCCCATCGCCCTGTCCCATTGCGGGACAAGCACTCCACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACCTGTCCCCATCGCCCTGTCCCATTGCGGGACAAGCACTCCACG  650

seq1  CACCAAGGTGAGTCCCTGGCCTGAGCACCCACCTCTTCCTGGCCTCCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGGTGAGTCCCTGGCCTGAGCACCCACCTCTTCCTGGCCTCCTCT  700

seq1  AGCTCAGCCTGCACCTTTCCAATTTCAATCTGCAGCCGGGCACGTTCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCCTGCACCTTTCCAATTTCAATCTGCAGCCGGGCACGTTCACG  750

seq1  GGCCGTCTCATCCAGTACCCGTCGGGCGTCAGCCAGCTCTGACTCGTACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGTCTCATCCAGTACCCGTCGGGCGTCAGCCAGCTCTGACTCGTACA  800

seq1  GGGTCTTGATGCCACTCACCTGGGGAGACAGGGCAGGGGGTGACAATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGATGCCACTCACCTGGGGAGACAGGGCAGGGGGTGACAATGGG  850

seq1  AACACAGGACTATCCTATGTCGACCCTATGACACTGTCTTATGACAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGACTATCCTATGTCGACCCTATGACACTGTCTTATGACAGAGG  900

seq1  AGTCTAGGTGGTCTTTCTGGAAGGATCCATCTT-CCTTTTCCACAATTCG  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGTCTAGGTGGTCTTTCTGGAAGGATCCATCTTCCCTTTTCCACAATTCG  950

seq1  GCCTGACAGGATCAGGCCACAGGACCC-TAAGCTTGGGTGGGAAGGTGTA  998
      |||||||| ||||||| |||||||||| ||||| |||||||||| |||||
seq2  GCCTGACA-GATCAGG-CACAGGACCCTTAAGC-TGGGTGGGAA-GTGTA  996

seq1  GCCAAAGCTAGCCCACTTGGCACCATTGGCTCAGGGCCTTACAATTCTCA  1048
      ||||||||||||||||||||||||||||||||| |||||||||  |||||
seq2  GCCAAAGCTAGCCCACTTGGCACCATTGGCTCA-GGCCTTACA--TCTCA  1043

seq1  GCTAGGGGACATCCCTGCCAACCCA-CTG-CACCTGTGCAGCAG-ACA-C  1094
      ||||||||||||||||||||||||| ||| |||||||||||||| ||| |
seq2  GCTAGGGGACATCCCTGCCAACCCACCTGCCACCTGTGCAGCAGAACACC  1093

seq1  CGGGCATCC-CACTGCC-AGTCTAGAATTCCTGGTCTAATGTGTTTCCTT  1142
      ||||||||| ||  ||| ||||||||  | ||    |||||||||  |||
seq2  CGGGCATCCACATGGCCAAGTCTAGATCTGCT----TAATGTGTT--CTT  1137

seq1  TTCTCCAAAGCCTCAGTACCGAGATGGCAGGTATCC-AGCGC  1183
      |  ||||    ||||||| |||||| ||| |||||| |||||
seq2  T--TCCA---GCTCAGTA-CGAGAT-GCA-GTATCCAAGCGC  1171

seq1: chr10_80523406_80524535
seq2: B6Ng01-294J20.g_64_1167 (reverse)

seq1  ATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGC  50
      |||||| ||||  || ||||||||  |||  ||||||||||||||||  |
seq2  ATGTGG-TGCT--GAATTGAACTCCAGAC--TTGGAAGAGCAGTCAGGTC  45

seq1  TCTTACCTGCTGAGCCATCTCACCAGCCCCCTGTTTTCGTAATTTTTTTT  100
      |||   |||||||| ||||||| ||| |||||| |||||||| |||||||
seq2  TCT--ACTGCTGAGGCATCTCA-CAG-CCCCTG-TTTCGTAA-TTTTTTT  89

seq1  TTCTTTTTCCTTTTTTTAAAATGACAATACTACGAGCCCAGCCTGGCCCG  150
      |||||||  ||||||   ||||||| |||||||||| ||||||||   | 
seq2  TTCTTTT--CTTTTT---AAATGAC-ATACTACGAG-CCAGCCTG---CC  129

seq1  GAACTCTTCATCCACTTCGCCCATCTTGGAAACTGGCATATCCCACTTTC  200
      |||||| |||||||| ||||||||| || ||||| |||||| ||||||||
seq2  GAACTC-TCATCCAC-TCGCCCATC-TGAAAACT-GCATAT-CCACTTTC  174

seq1  TGTGAAAGCAGTAAGTGTGATTAACCACTAAACAATCTACTTCACTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCAGTAAGTGTGATTAACCACTAAACAATCTACTTCACTTATT  224

seq1  TTTATATTTAAAACCTATTTACAAACTTATCTTTTGCACACCCCAACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTAAAACCTATTTACAAACTTATCTTTTGCACACCCCAACTTC  274

seq1  TTTCTGATGCCTAAAAGAAAAACAAAGATTAGCAGCCAGACAGTGGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATGCCTAAAAGAAAAACAAAGATTAGCAGCCAGACAGTGGTGGT  324

seq1  GCTCGCCTTTAATCTCAGCACTGGAGAGGCGGGGGAATCGCGGTGAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGCCTTTAATCTCAGCACTGGAGAGGCGGGGGAATCGCGGTGAGTTT  374

seq1  GAGGCAAGCCTTGTCTACAAAGGATAGCCAAAGCTACACAGAAAAACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAAGCCTTGTCTACAAAGGATAGCCAAAGCTACACAGAAAAACCTG  424

seq1  TCTCAAAAAATAAAAACAGGAGCCGGGCGTGGTGGCCCACGCCTTTAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAATAAAAACAGGAGCCGGGCGTGGTGGCCCACGCCTTTAATC  474

seq1  CCAGCACTCGGGATGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACTCGGGATGAGTTCGAGGCCAGCCTGGTCTACAGAGCGAGTTCC  524

seq1  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAAAAATA  574

seq1  AATAAAAAAATAAAAATAAAAATAAAAACAGGTCGGGCGTGGTAGCGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAAATAAAAATAAAAATAAAAACAGGTCGGGCGTGGTAGCGCAC  624

seq1  GCCTTTAATCCCAGCACTCGGGAGCCAGAGGCAGGCAGATTTCTGAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTCGGGAGCCAGAGGCAGGCAGATTTCTGAGTTC  674

seq1  CAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCTGCTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACA  724

seq1  GAGAAACCCTGTCTCGAAAAACCAAAAAAAAAATTAATAAATAAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCCTGTCTCGAAAAACCAAAAAAAAAATTAATAAATAAAAATAA  774

seq1  ATAAAACCAACTTATCTTTACTTTTGAATTATGTGGATGTCTATGTGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAACTTATCTTTACTTTTGAATTATGTGGATGTCTATGTGTGG  824

seq1  GTGTCTGCATGGGAATACAGTGCCTATAAAAATCAGAAGAGGGCATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCATGGGAATACAGTGCCTATAAAAATCAGAAGAGGGCATGGAA  874

seq1  TCCCCAAGGCTAGAGTTGGGTGCAGTGCAATTCAGGCCCTCTGCAAAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGCTAGAGTTGGGTGCAGTGCAATTCAGGCCCTCTGCAAAAGC  924

seq1  TGTATGTACTCTACTTTTTTTATTTTCTTTGAGACAGGGTCTCATACCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTACTCTACTTTTTTTATTTTCTTTGAGACAGGGTCTCATACCGT  974

seq1  AGGCAAGGTTGGGCTAAAACTGCACTACCCAGTTTGCAATATGTACTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGGTTGGGCTAAAACTGCACTACCCAGTTTGCAATATGTACTCTT  1024

seq1  AACCATTGAACTATCTCTCCTATTTTCATTTTACCATGTCTTACTATGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGAACTATCTCTCCTATTTTCATTTTACCATGTCTTACTATGTA  1074

seq1  GCTCAGGTTGACCTTAAATTTATGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  GCTCAGGTTGACCTTAAATTTATGGAATTC  1104