BAC Information

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BAC

Clone NameB6Ng01-294K19
Chromosome10 (Build37)
Map Location 77,905,900 - 77,906,979
singlet/doubletsinglet
Overlap genePdxk
Upstream gene1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb
Downstream geneEG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294K19.bB6Ng01-294K19.g
ACCGA090742GA090743
length1,1571,066
definitionB6Ng01-294K19.b B6Ng01-294K19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ctcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatggtccaaccggtaagaaggacacatgctccagtat
gttcatagcagcctcatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaagggatacagaaaatgtggtacatttgcacaacg
gagtactactcagctatttaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcattatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatatactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaatgcatgaaactcaa
gaagaacgaagaccagagtgtggacactttgccccttcttagaattggga
acaaaacacccatcgaaggagttacagagacaaaatttggagctgtgacg
aaaggatggaccatctagagactgccttatctagggatccatcccataat
cagcttccaaacgctgacaccattgcgtacactagcaagattttgctgaa
aggacccaggtagagctgtctcttgtgagactatgctggggcctagcaaa
cacagaagtggatgctcacagtcagctatggatatatcacaggccccaat
ggagaagctagagaaagtacccaggagctaaagggatctacaaccctata
gtggaacaacattatgaactaacagtacccccggagctcttgactcttag
ctgcatatgttatcaaagatggctatcagcatcactgcaagaagaagtca
ttgactggcaacttttatctccgtacatgggaaccgcaaggacctaaatt
gtgatga
gaattctgggaactcttcagagggtatataaatgctagggcctcagttag
taattgtgctcaaagaagaaacaagaaagaaattagactcagattctctc
tctctctctcttcctctctctctctccctctctctaacccttcattctct
cctctccagttagggggtaaaaccaggggataaagggtgcaaaaaggaac
ccacaaagtagcaaagaccagcaacagaagtggctcctggcccaccaagg
aggagtctgaaaggctgcatgggcccaggatttctggctgaatcctgtgt
gaatggtagtttctgtccttttaattttttaaattaatctaccttttaca
ctctgagggtcaaaacccaggtcatatgcatgcactagacatacatcctg
agctacctgagtaccaacttttaaatcttagcccctgaggtttttgtttc
cacgccatcacttcccaaacatgtaaacatggtcccctccaccctcccac
agactcttggctcaggcccaggccctactaacctgctcttctctctcatg
gttagaaccatagcacactaccttcccaccaggagtactgagggaatggt
ggagaggagcaacaggtacaactgaccttgagattgtccgggtgcttgtg
tgtccacgccagaagcatggcagcgaagaggtccccggtgcccacgaaga
cagcttccactttgcgcatctccatccggatgcgctgggtcaccgtggag
ccgtcaggtttccctgggggaggacataagccaggtcactgggtctgaga
cttctcagtcagacactggtcacccctacagtaagaacctgttgcctggt
gtggtggcacacgcctttaatcccagcactcgggaggcagaggcaggcgg
atttctgagtttgaggccagcctggtctacaagtgagttccaggacagcc
agggctacagagaaccctgtctcaagaataaacaaagagagatcgagaag
aacctatcagcccaactgtcccacatctcttagtgacgaagtcagcactt
gcccatctctcagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77905900_77906979
seq2: B6Ng01-294K19.g_69_1134

seq1  GAATTCTGGGAACTCTTCAGAGGGTATATAAATGCTAGGGCCTCAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAACTCTTCAGAGGGTATATAAATGCTAGGGCCTCAGTTAG  50

seq1  TAATTGTGCTCAAAGAAGAAACAAGAAAGAAATTAGACTCAGATTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTGCTCAAAGAAGAAACAAGAAAGAAATTAGACTCAGATTCTCTC  100

seq1  TCTCTCTCTCTTCCTCTCTCTCTCTCCCTCTCTCTAACCCTTCATTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTTCCTCTCTCTCTCTCCCTCTCTCTAACCCTTCATTCTCT  150

seq1  CCTCTCCAGTTAGGGGGTAAAACCAGGGGATAAAGGGTGCAAAAAGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAGTTAGGGGGTAAAACCAGGGGATAAAGGGTGCAAAAAGGAAC  200

seq1  CCACAAAGTAGCAAAGACCAGCAACAGAAGTGGCTCCTGGCCCACCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGTAGCAAAGACCAGCAACAGAAGTGGCTCCTGGCCCACCAAGG  250

seq1  AGGAGTCTGAAAGGCTGCATGGGCCCAGGATTTCTGGCTGAATCCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGAAAGGCTGCATGGGCCCAGGATTTCTGGCTGAATCCTGTGT  300

seq1  GAATGGTAGTTTCTGTCCTTTTAATTTTTTAAATTAATCTACCTTTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTAGTTTCTGTCCTTTTAATTTTTTAAATTAATCTACCTTTTACA  350

seq1  CTCTGAGGGTCAAAACCCAGGTCATATGCATGCACTAGACATACATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGGTCAAAACCCAGGTCATATGCATGCACTAGACATACATCCTG  400

seq1  AGCTACCTGAGTACCAACTTTTAAATCTTAGCCCCTGAGGTTTTTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTGAGTACCAACTTTTAAATCTTAGCCCCTGAGGTTTTTGTTTC  450

seq1  CACGCCATCACTTCCCAAACATGTAAACATGGTCCCCTCCACCCTCCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCATCACTTCCCAAACATGTAAACATGGTCCCCTCCACCCTCCCAC  500

seq1  AGACTCTTGGCTCAGGCCCAGGCCCTACTAACCTGCTCTTCTCTCTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTGGCTCAGGCCCAGGCCCTACTAACCTGCTCTTCTCTCTCATG  550

seq1  GTTAGAACCATAGCACACTACCTTCCCACCAGGAGTACTGAGGGAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACCATAGCACACTACCTTCCCACCAGGAGTACTGAGGGAATGGT  600

seq1  GGAGAGGAGCAACAGGTACAACTGACCTTGAGATTGTCCGGGTGCTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGAGCAACAGGTACAACTGACCTTGAGATTGTCCGGGTGCTTGTG  650

seq1  TGTCCACGCCAGAAGCATGGCAGCGAAGAGGTCCCCGGTGCCCACGAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCACGCCAGAAGCATGGCAGCGAAGAGGTCCCCGGTGCCCACGAAGA  700

seq1  CAGCTTCCACTTTGCGCATCTCCATCCGGATGCGCTGGGTCACCGTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCACTTTGCGCATCTCCATCCGGATGCGCTGGGTCACCGTGGAG  750

seq1  CCGTCAGGTTTCCCTGGGGGAGGACATAAGCCAGGTCACTGGGTCTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGGTTTCCCTGGGGGAGGACATAAGCCAGGTCACTGGGTCTGAGA  800

seq1  CTTCTCAGTCAGACACTGGTCACCCCTACAGTAAGAACCTGTTGCCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGTCAGACACTGGTCACCCCTACAGTAAGAACCTGTTGCCTGGT  850

seq1  GTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGG  900

seq1  ATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATTTCTGAGTTTGAGGCCAGCCTGGTCTAC-AAGTGAGTTCCAGGACAGC  949

seq1  CAGGGCTACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAGAG  1000
      ||||||||||||| |||||||||||       || || ||| ||| ||||
seq2  CAGGGCTACAGAG-AACCCTGTCTC-------AAGAATAAACAAAGAGAG  991

seq1  ATCGAGAAGAACCTATCAGCCCAACTTGTCCCCACATCTCTTAAGTGACA  1050
      ||||||||||||||||||||||||| ||| |||||||||||| |||||| 
seq2  ATCGAGAAGAACCTATCAGCCCAAC-TGT-CCCACATCTCTT-AGTGAC-  1037

seq1  GGAAGGTCAGCAC-TGCCCATCCTTCAGATG  1080
       ||| |||||||| ||||||||  |||||||
seq2  -GAA-GTCAGCACTTGCCCATCTCTCAGATG  1066