BAC Information

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BAC

Clone NameB6Ng01-295C23
Chromosome10 (Build37)
Map Location 28,405,815 - 28,546,538
singlet/doubletdoublet
Overlap geneE430004N04Rik
Upstream geneLOC100040385, LOC100040961, LOC100040401, Ptprk
Downstream gene4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3, EG630389, Rpl12, LOC623064
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295C23.bB6Ng01-295C23.g
ACCGA091119GA091120
length9901,107
definitionB6Ng01-295C23.b B6Ng01-295C23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,405,815 - 28,406,803)(28,545,432 - 28,546,538)
sequence
gaattcactctagaactggttgaataagtagattgaataacgatttttag
taaattattttatatatggatagacattttatggatttaatacgtgtatt
ggagttaaggtggtaaaattctgactattttaccacccacatacatttta
ctttatgtataactgagcttaatatttctctacctaaatttaatcaacaa
gggctatggcagtaaagttagagaaaaattgaaaattatagagtgataga
tattccagttacatctacttacacttcacagattatatagatttacgccc
aaagttttttttctttttactatgcattttcaacattgatattggtttat
agcaaatgaaaaggaaggaaattatacagcatttaatggcacatggcctt
gtcaatttaaaaaaatcaagctcacgaagaccagaaagctcatatttttc
tctatgatcttatacttgtaaagacttattaagggctcttacttaaatct
taagatagaggtttttacccatgtgtatgcgttctgctaaaattctggga
tatgtaattgtgcttgagagtcaggcaatctctagtcacaagacacaaaa
aagaaagcacttagaaatcaataattattaaataaatattaatttttttc
tgtgggactggtatatagttgagaacatatgaatataagatagaatttgc
ccactttaaatgtttaattcagttttaaaacatgctgggattttatgtat
atgacaatgtacaaagttctactttgtaatacatttttgaaaaacatatt
tttttttttggtctgagtgatgtttgatttttttccctttacaaactttg
gaacaatttttgttttccatttgctaatactagagactttatacttttgt
gcaatatgaagctatactttaatgtgattagaaatacatttaaaataaga
acaaagcacatgaaacttaaaagtcctagtgtgtgtgtgt

gaattcatcatttttatacctaccttataagaaagaaaattaaactgaaa
aaaatctaattaaaaactccaaatacaaataaggaatactctcctaccat
caagaaggtgtacaaaaatttttaattgtcatccaaacgctaagttacaa
aagattttataaaaagcagaggtacaataatttgtgaatgagtatcatga
aaagttgtaaatcaacgacaagatgtgcttctcagaaacagcagaagtgt
agaattcttgtgtcattttatgtgattcgacttacttgttgtcagtttaa
aatactccattacaattatgaatattttatgtaaggcttgataaacacaa
agaacatgcctatagaaggtagagaaaaaatgaatcaaagcatatcacta
tgaaaattatctagtcacaagggaagacagggagaaaaaaacaaagacag
ttgacttcaatttccaagaaaaatatatgctgaaagtttagatatgattg
tttttaaaaagtctatacagactaactaaagagagggtagatggtagtgc
ttatatttttaaaaataactttaaatttgttacaggagggaaacaaggtc
attgcatccttcatcaaatagttataataattgtgcacacacacaaatac
acatacaaacacacacacacacacacacagaagccctcatatatataaaa
caaatgttaacaaaacttagcagattaatacaatcagtagcagaaggcat
attcagtactatgtgaccagcatggattgttgatccatacatagattcaa
tttggaaatcatataacccaggtgaacctaacagacatgaatgttacagt
atcttataagacttcataatgcatattcatctcaaggcaaatgttctcca
gaatagattatagtaggccaccaaactcctgtaaaacatctaaaggagtt
tgaaggttatagaagaagctcagaggtaacagaacttgcctaacagcaga
taaagccttggatatacaaacacacacacacacacacacacaacacacac
acacgcacacgcctccagtctaaaaagattaaaatgaagttccatcacaa
tttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28405815_28406803
seq2: B6Ng01-295C23.b_43_1032

seq1  GAATTCACTCTAGAACTGGTTGAATAAGTAGATTGAATAACGATTTTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTAGAACTGGTTGAATAAGTAGATTGAATAACGATTTTTAG  50

seq1  TAAATTATTTTATATATGGATAGACATTTTATGGATTTAATACGTGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTTATATATGGATAGACATTTTATGGATTTAATACGTGTATT  100

seq1  GGAGTTAAGGTGGTAAAATTCTGACTATTTTACCACCCACATACATTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAAGGTGGTAAAATTCTGACTATTTTACCACCCACATACATTTTA  150

seq1  CTTTATGTATAACTGAGCTTAATATTTCTCTACCTAAATTTAATCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTATAACTGAGCTTAATATTTCTCTACCTAAATTTAATCAACAA  200

seq1  GGGCTATGGCAGTAAAGTTAGAGAAAAATTGAAAATTATAGAGTGATAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTATGGCAGTAAAGTTAGAGAAAAATTGAAAATTATAGAGTGATAGA  250

seq1  TATTCCAGTTACATCTACTTACACTTCACAGATTATATAGATTTACGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGTTACATCTACTTACACTTCACAGATTATATAGATTTACGCCC  300

seq1  AAAGTTTTTTTTCTTTTTACTATGCATTTTCAACATTGATATTGGTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTTTTTCTTTTTACTATGCATTTTCAACATTGATATTGGTTTAT  350

seq1  AGCAAATGAAAAGGAAGGAAATTATACAGCATTTAATGGCACATGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGAAAAGGAAGGAAATTATACAGCATTTAATGGCACATGGCCTT  400

seq1  GTCAATTTAAAAAAATCAAGCTCACGAAGACCAGAAAGCTCATATTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTAAAAAAATCAAGCTCACGAAGACCAGAAAGCTCATATTTTTC  450

seq1  TCTATGATCTTATACTTGTAAAGACTTATTAAGGGCTCTTACTTAAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGATCTTATACTTGTAAAGACTTATTAAGGGCTCTTACTTAAATCT  500

seq1  TAAGATAGAGGTTTTTACCCATGTGTATGCGTTCTGCTAAAATTCTGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGAGGTTTTTACCCATGTGTATGCGTTCTGCTAAAATTCTGGGA  550

seq1  TATGTAATTGTGCTTGAGAGTCAGGCAATCTCTAGTCACAAGACACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATTGTGCTTGAGAGTCAGGCAATCTCTAGTCACAAGACACAAAA  600

seq1  AAGAAAGCACTTAGAAATCAATAATTATTAAATAAATATTAATTTTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCACTTAGAAATCAATAATTATTAAATAAATATTAATTTTTTTC  650

seq1  TGTGGGACTGGTATATAGTTGAGAACATATGAATATAAGATAGAATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACTGGTATATAGTTGAGAACATATGAATATAAGATAGAATTTGC  700

seq1  CCACTTTAAATGTTTAATTCAGTTTTAAAACATGCTGGGATTTTATGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTAAATGTTTAATTCAGTTTTAAAACATGCTGGGATTTTATGTAT  750

seq1  ATGACAATGTACAAAGTTCTACTTTGTAATACATTTTTGAAAAACATA-T  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATGACAATGTACAAAGTTCTACTTTGTAATACATTTTTGAAAAACATATT  800

seq1  TTTTTTTTTGGTCTGAGTGATGTTTGATTTTTTTCCCTTTACAAACTTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGGTCTGAGTGATGTTTGATTTTTTTCCCTTTACAAACTTTG  850

seq1  GAACAATTTTTGTTTTCCATTTGCTAATACTAGAGACTTTATACTTTTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTTTTGTTTTCCATTTGCTAATACTAGAGACTTTATACTTTTGT  900

seq1  GCAATATGAAGCTATACTTTAATGTGATTAGAAATACATTTAAAATAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGAAGCTATACTTTAATGTGATTAGAAATACATTTAAAATAAGA  950

seq1  ACAAAAGCACATGAAACTTAAAAGT-CTAGTGTGTGTGTGT  989
      || |||||||||||||||||||||| |||||||||||||||
seq2  AC-AAAGCACATGAAACTTAAAAGTCCTAGTGTGTGTGTGT  990


seq1: chr10_28545432_28546538
seq2: B6Ng01-295C23.g_67_1173 (reverse)

seq1  TCATAAATTGTGAT-GAACTTCATTTTAATCTTTTTAGGAGTGGTGTGTG  49
      |||||||||||||| |||||||||||||||||||||| || ||| | | |
seq2  TCATAAATTGTGATGGAACTTCATTTTAATCTTTTTA-GACTGGAG-GCG  48

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTATAT  99
      |||| |||||||||||| ||||||||||||||||||||||| || |||||
seq2  TGTGCGTGTGTGTGTGT-TGTGTGTGTGTGTGTGTGTGTGTTTG-TATAT  96

seq1  CCAAGGCTTTATCTGCTGTTAGGCAAGTTCTG-TACCTCTGAGCTTCTTC  148
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCAAGGCTTTATCTGCTGTTAGGCAAGTTCTGTTACCTCTGAGCTTCTTC  146

seq1  TATAACCTTCAAACTCC-TTAGATGTTTTACAGGAGTTTGGTGGCCTACT  197
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TATAACCTTCAAACTCCTTTAGATGTTTTACAGGAGTTTGGTGGCCTACT  196

seq1  ATAATCTATTCTGGAGAACATTTG-CTTGAGATGAATATGCATTATGAAG  246
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATAATCTATTCTGGAGAACATTTGCCTTGAGATGAATATGCATTATGAAG  246

seq1  TCTTATAAGATACTGTAACATTCATGTCTGTTAGGTTCACCTGGGTTATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAGATACTGTAACATTCATGTCTGTTAGGTTCACCTGGGTTATA  296

seq1  TGATTTCCAAATTGAATCTATGTATGGATCAACAATCCATGCTGGTCACA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCCAAATTGAATCTATGTATGGATCAACAATCCATGCTGGTCACA  346

seq1  TAGTACTGAATATGCCTTCTGCTACTGATTGTATTAATCTGCTAAGTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTGAATATGCCTTCTGCTACTGATTGTATTAATCTGCTAAGTTTT  396

seq1  GTTAACATTTGTTTTATATATATGAGGGCTTCTGTGTGTGTGTGTGTGTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACATTTGTTTTATATATATGAGGGCTTCTGTGTGTGTGTGTGTGTG  446

seq1  TGTTTGTATGTGTATTTGTGTGTGTGCACAATTATTATAACTATTTGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATGTGTATTTGTGTGTGTGCACAATTATTATAACTATTTGATG  496

seq1  AAGGATGCAATGACCTTGTTTCCCTCCTGTAACAAATTTAAAGTTATTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGCAATGACCTTGTTTCCCTCCTGTAACAAATTTAAAGTTATTTT  546

seq1  TAAAAATATAAGCACTACCATCTACCCTCTCTTTAGTTAGTCTGTATAGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAAGCACTACCATCTACCCTCTCTTTAGTTAGTCTGTATAGA  596

seq1  CTTTTTAAAAACAATCATATCTAAACTTTCAGCATATATTTTTCTTGGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAAAAACAATCATATCTAAACTTTCAGCATATATTTTTCTTGGAA  646

seq1  ATTGAAGTCAACTGTCTTTGTTTTTTTCTCCCTGTCTTCCCTTGTGACTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTCAACTGTCTTTGTTTTTTTCTCCCTGTCTTCCCTTGTGACTA  696

seq1  GATAATTTTCATAGTGATATGCTTTGATTCATTTTTTCTCTACCTTCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTCATAGTGATATGCTTTGATTCATTTTTTCTCTACCTTCTAT  746

seq1  AGGCATGTTCTTTGTGTTTATCAAGCCTTACATAAAATATTCATAATTGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTTCTTTGTGTTTATCAAGCCTTACATAAAATATTCATAATTGT  796

seq1  AATGGAGTATTTTAAACTGACAACAAGTAAGTCGAATCACATAAAATGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGTATTTTAAACTGACAACAAGTAAGTCGAATCACATAAAATGAC  846

seq1  ACAAGAATTCTACACTTCTGCTGTTTCTGAGAAGCACATCTTGTCGTTGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAATTCTACACTTCTGCTGTTTCTGAGAAGCACATCTTGTCGTTGA  896

seq1  TTTACAACTTTTCATGATACTCATTCACAAATTATTGTACCTCTGCTTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAACTTTTCATGATACTCATTCACAAATTATTGTACCTCTGCTTTT  946

seq1  TATAAAATCTTTTGTAACTTAGCGTTTGGATGACAATTAAAAATTTTTGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATCTTTTGTAACTTAGCGTTTGGATGACAATTAAAAATTTTTGT  996

seq1  ACACCTTCTTGATGGTAGGAGAGTATTCCTTATTTGTATTTGGAGTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTCTTGATGGTAGGAGAGTATTCCTTATTTGTATTTGGAGTTTTT  1046

seq1  AATTAGATTTTTTTCAGTTTAATTTTCTTTCTTATAAGGTAGGTATAAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTTTTTTCAGTTTAATTTTCTTTCTTATAAGGTAGGTATAAAA  1096

seq1  ATGATGAATTC  1107
      |||||||||||
seq2  ATGATGAATTC  1107


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