BAC Information

Click to search

BAC

Clone NameB6Ng01-295E24
Chromosome10 (Build37)
Map Location 115,630,477 - 115,631,568
singlet/doubletsinglet
Overlap genePtprr
Upstream geneTbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8, 4933416C03Rik
Downstream genePtprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295E24.bB6Ng01-295E24.g
ACCGA091210GA091211
length1,0851,219
definitionB6Ng01-295E24.b B6Ng01-295E24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatctacattatatatcacctgcgcgttgtatttaaatacaatgt
ctaaatctattttttctgtgtctaaatctaatttttccctcttttaaatc
atattgtattctctccaggcttatcttcctaaaacatagcctactatgga
aaagtcccccagtcacctagaagacaagacatctttgcctggaagatcct
agacaacctagttctctttttctctccaattctatttgctcctggcttta
ttgtactgccagagccataaaaatttccacagtaacaaaagcaatgaaaa
aatggcaataaaatgatccatccatgatcttctcctaaactcaagcccaa
ctccttcattttattataatttttcccctgggacagtcaaaagccctggc
ttctgtcccctcctccctctggtggatacattttgataggtaacaaattt
ttaaaaacttttaatccttctcctgttgatctccctccaggagatatgaa
taaagatcatgactgagcgaatgccagggcataaactgtattaagaactc
tagaattgaaagcctgcattctttaaatcagccccctgccgtgagagcag
agagtcaactcttgcactctctatccaatggcagtgaaatctcaaatctg
ctctgaggtcagaggtagggcttcgtgaaggcttagcttgagacgcagat
cgttgtccaggtggtttgtgcacaggatgctctaaggagaagcctagcag
ggaagcagagaagcagctcaggcacgaggacaagcaaaggggggttggct
catacgctcactctgaccacacagggagccctggatcatccatggttgct
catggacggttctcaccttcagcgatatgagcttgatacccattccctca
taccactgcaggatgcctgcagatataacgtcctactcagctcctgtcac
ctgagggtgattctcccagaagtggccaccagatgcatttacaggcagcg
ttcctggtcgaggaagaagatgagagcattggtgaagcagagtgactgat
gggacactgcagcatcaactgtgttttccagggtt
gaattcatatctattagtcatttctcattttctctagccagggcatcagt
aattcgctttccatgtctatagagatgggtactctggacattttatagaa
attaagtcataaataggtggcaaaatatattcaaggtttatctaaatcac
atatacgaagagttattcatttttatggctaaataacatttaaacacatc
aatattttgttacttatccattgatgtatattcaagttatttttactgtt
ttagaactttgaaagatgctgctatgaagattctgtgggggcgtgttttc
atttcttttcagtatatacttaggagttgaattgttgagtcacatgacag
catatgcttacgatttttaggagttacaaaaccattctctgcgtaacagc
tatcctattttatggtctcataagcaatgtgtgaggctcccttcacctgg
cgccctgacacggcccttgagtggtcaaggtgtggcatcttgctgtggat
ctgacttgcacctccctaatgagttatgatctcatttgtctctcagtatc
ttgagcatctttggaactatgtccatttcaatcctctgtccatttttatt
ttattttaaaatattttaaagattaatttattttttatttgatgtgtatg
agtgttttgcctgcatgtatgcatgggcactgaatatttctggtacctga
agagcccaaaagagggtgtcagctggagtaatgaactgttataagccacc
atgtaggtgctgggactcaaacccaggtccactggaagagcagccagtgc
tcttaactggtggagttatttgtcattatcgttgaattgcaaggtaagag
gttcattactactgatgattttgcaactatttccctcgagtctctcaggt
catctcctcacatgttagatgctgtcttttcacatataaaagattttcat
tttgggtgaaccccagtcgtttatctttttccttctttatgcctgttgaa
tatttttaccccagaagttcattttatagctcaaggtcacacagattttc
ctcctgtatttctttgagaaggcggtcctagaaggtcctggccctctctt
gttaggtttgtgggggagtaggctcaatttacgtgagactggcatggcaa
gggcgtgaatcgtgattgtccatagtcgaactccatttcttcatccaatc
caggagtatacatctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_115630477_115631568
seq2: B6Ng01-295E24.b_48_1132

seq1  GAATTCATCTACATTATATATCACCTGCGCGTTGTATTTAAATACAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTACATTATATATCACCTGCGCGTTGTATTTAAATACAATGT  50

seq1  CTAAATCTATTTTTTCTGTGTCTAAATCTAATTTTTCCCTCTTTTAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCTATTTTTTCTGTGTCTAAATCTAATTTTTCCCTCTTTTAAATC  100

seq1  ATATTGTATTCTCTCCAGGCTTATCTTCCTAAAACATAGCCTACTATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTATTCTCTCCAGGCTTATCTTCCTAAAACATAGCCTACTATGGA  150

seq1  AAAGTCCCCCAGTCACCTAGAAGACAAGACATCTTTGCCTGGAAGATCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCCAGTCACCTAGAAGACAAGACATCTTTGCCTGGAAGATCCT  200

seq1  AGACAACCTAGTTCTCTTTTTCTCTCCAATTCTATTTGCTCCTGGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACCTAGTTCTCTTTTTCTCTCCAATTCTATTTGCTCCTGGCTTTA  250

seq1  TTGTACTGCCAGAGCCATAAAAATTTCCACAGTAACAAAAGCAATGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTGCCAGAGCCATAAAAATTTCCACAGTAACAAAAGCAATGAAAA  300

seq1  AATGGCAATAAAATGATCCATCCATGATCTTCTCCTAAACTCAAGCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCAATAAAATGATCCATCCATGATCTTCTCCTAAACTCAAGCCCAA  350

seq1  CTCCTTCATTTTATTATAATTTTTCCCCTGGGACAGTCAAAAGCCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATTTTATTATAATTTTTCCCCTGGGACAGTCAAAAGCCCTGGC  400

seq1  TTCTGTCCCCTCCTCCCTCTGGTGGATACATTTTGATAGGTAACAAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCCCTCCTCCCTCTGGTGGATACATTTTGATAGGTAACAAATTT  450

seq1  TTAAAAACTTTTAATCCTTCTCCTGTTGATCTCCCTCCAGGAGATATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACTTTTAATCCTTCTCCTGTTGATCTCCCTCCAGGAGATATGAA  500

seq1  TAAAGATCATGACTGAGCGAATGCCAGGGCATAAACTGTATTAAGAACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATCATGACTGAGCGAATGCCAGGGCATAAACTGTATTAAGAACTC  550

seq1  TAGAATTGAAAGCCTGCATTCTTTAAATCAGCCCCCTGCCGTGAGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGAAAGCCTGCATTCTTTAAATCAGCCCCCTGCCGTGAGAGCAG  600

seq1  AGAGTCAACTCTTGCACTCTCTATCCAATGGCAGTGAAATCTCAAATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAACTCTTGCACTCTCTATCCAATGGCAGTGAAATCTCAAATCTG  650

seq1  CTCTGAGGTCAGAGGTAGGGCTTCGTGAAGGCTTAGCTTGAGACGCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTCAGAGGTAGGGCTTCGTGAAGGCTTAGCTTGAGACGCAGAT  700

seq1  CGTTGTCCAGGTGGTTTGTGCACAGGATGCTCTAAGGAGAAGCCTAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTCCAGGTGGTTTGTGCACAGGATGCTCTAAGGAGAAGCCTAGCAG  750

seq1  GGAAGCAGAGAAGCAGCTCAGGCACGAGGACAAGCAAAGGGGGGTTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGAGAAGCAGCTCAGGCACGAGGACAAGCAAAGGGGGGTTGGCT  800

seq1  CATACGCTCACTCTGACCACACAGGGAGCCCTGGATCATCCATGGTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGCTCACTCTGACCACACAGGGAGCCCTGGATCATCCATGGTTGCT  850

seq1  CATGGACGGTTCTCACCTTCAGCGATATGAGCTTGATACCCATTCCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACGGTTCTCACCTTCAGCGATATGAGCTTGATACCCATTCCCTCA  900

seq1  TACCACTGCAGGATGCCTGCAGATATAACGTCCTACTCAGCTCCTGTCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTGCAGGATGCCTGCAGATATAACGTCCTACTCAGCTCCTGTCAC  950

seq1  CTGAGGGTGATTCTCCCAGAAAGTGGCCACCAGATGCATTTAACAGGCAG  1000
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  CTGAGGGTGATTCTCCCAG-AAGTGGCCACCAGATGCATTT-ACAGGCAG  998

seq1  CGTTCCTGGGTCGAGGAAGAAGATGAGAGCATTGGTGAAGCAGAGGTGAC  1050
      ||||||| |||||||||||||||||||||||||||||||||||| |||| 
seq2  CGTTCCT-GGTCGAGGAAGAAGATGAGAGCATTGGTGAAGCAGA-GTGA-  1045

seq1  CTGAAGGGGACAACTGCAGCATC-ACTGTGTTTTCCAAGGGTT  1092
      ||| | ||||| ||||||||||| |||||||||||| ||||||
seq2  CTG-ATGGGAC-ACTGCAGCATCAACTGTGTTTTCC-AGGGTT  1085