BAC Information

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BAC

Clone NameB6Ng01-295P07
Chromosome10 (Build37)
Map Location 61,869,818 - 62,009,306
singlet/doubletdoublet
Overlap geneHkdc1, Supv3l1, Vps26a, Srgn
Upstream geneNodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik
Downstream gene2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295P07.bB6Ng01-295P07.g
ACCGA091692GA091693
length492335
definitionB6Ng01-295P07.b B6Ng01-295P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,869,818 - 61,870,315)(62,008,972 - 62,009,306)
sequence
aaggacagtctggtctacagataaaaccctgtctcaaatattacttgaat
gtctgagcctccaactgccttttcccgggatccccagctggacacctgca
gcctctaactttcatgtctcaggcccctttgtgcctttgccgacagttca
gtggcctctggacaggttgtctacgtctacccctgtcctggggatcagtc
tcacagttgcagtccaactgagataggagctcagtcttaagcccaggcta
gcctgaaactccctaagtagcccaggctggcatcaaagttagagccatct
tactgcctccaatccatgagggccgagattacagatgggagttgtatgtc
cagcttccattgcccttctcaacatacacaggagggtccaaggagattca
ctgtgagccagcactgagcacagacccagcacatcacggcatgaagagac
aagggagggaaggaggaggcaggggatggagatgaggagaga
agaggaagcctgccaactcaggaactgaagcggtggggaaatttcagggg
caagtgggactttctgcataagaagggaccaaccagggcaccaggagcag
gagagctgtgtatgatgagatttctctggggtcagacatcagggggtgct
tgccctgcttggagcataggtgccgagggagattcagcattctatgggaa
gatggcccttcaggcgtgctccttacaaagagaaagaactcagggaatct
ctaagagttgccaatctggaactttctgaagcagtttgtcacttgagaat
ttatgtatctttgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61869818_61870315
seq2: B6Ng01-295P07.b_46_543

seq1  GAATTCAAGGACAGTCTGGTCTACAGATAAAACCCTGTCTCAAATATTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGACAGTCTGGTCTACAGATAAAACCCTGTCTCAAATATTAC  50

seq1  TTGAATGTCTGAGCCTCCAACTGCCTTTTCCCGGGATCCCCAGCTGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTCTGAGCCTCCAACTGCCTTTTCCCGGGATCCCCAGCTGGACA  100

seq1  CCTGCAGCCTCTAACTTTCATGTCTCAGGCCCCTTTGTGCCTTTGCCGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAGCCTCTAACTTTCATGTCTCAGGCCCCTTTGTGCCTTTGCCGAC  150

seq1  AGTTCAGTGGCCTCTGGACAGGTTGTCTACGTCTACCCCTGTCCTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGTGGCCTCTGGACAGGTTGTCTACGTCTACCCCTGTCCTGGGGA  200

seq1  TCAGTCTCACAGTTGCAGTCCAACTGAGATAGGAGCTCAGTCTTAAGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTCACAGTTGCAGTCCAACTGAGATAGGAGCTCAGTCTTAAGCCC  250

seq1  AGGCTAGCCTGAAACTCCCTAAGTAGCCCAGGCTGGCATCAAAGTTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTGAAACTCCCTAAGTAGCCCAGGCTGGCATCAAAGTTAGAG  300

seq1  CCATCTTACTGCCTCCAATCCATGAGGGCCGAGATTACAGATGGGAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTACTGCCTCCAATCCATGAGGGCCGAGATTACAGATGGGAGTTG  350

seq1  TATGTCCAGCTTCCATTGCCCTTCTCAACATACACAGGAGGGTCCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGCTTCCATTGCCCTTCTCAACATACACAGGAGGGTCCAAGGA  400

seq1  GATTCACTGTGAGCCAGCACTGAGCACAGACCCAGCACATCACGGCATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACTGTGAGCCAGCACTGAGCACAGACCCAGCACATCACGGCATGA  450

seq1  AGAGACAAGGGAGGGAAGGAGGAGGCAGGGGATGGAGATGAGGAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAAGGGAGGGAAGGAGGAGGCAGGGGATGGAGATGAGGAGAGA  498

seq1: chr10_62008972_62009306
seq2: B6Ng01-295P07.g_75_409 (reverse)

seq1  CACACACACACACACACACACACAAAGATACATAAATTCTCAAGTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAAAGATACATAAATTCTCAAGTGACAA  50

seq1  ACTGCTTCAGAAAGTTCCAGATTGGCAACTCTTAGAGATTCCCTGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTCAGAAAGTTCCAGATTGGCAACTCTTAGAGATTCCCTGAGTTC  100

seq1  TTTCTCTTTGTAAGGAGCACGCCTGAAGGGCCATCTTCCCATAGAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTGTAAGGAGCACGCCTGAAGGGCCATCTTCCCATAGAATGCT  150

seq1  GAATCTCCCTCGGCACCTATGCTCCAAGCAGGGCAAGCACCCCCTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCCCTCGGCACCTATGCTCCAAGCAGGGCAAGCACCCCCTGATGT  200

seq1  CTGACCCCAGAGAAATCTCATCATACACAGCTCTCCTGCTCCTGGTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCAGAGAAATCTCATCATACACAGCTCTCCTGCTCCTGGTGCCC  250

seq1  TGGTTGGTCCCTTCTTATGCAGAAAGTCCCACTTGCCCCTGAAATTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTCCCTTCTTATGCAGAAAGTCCCACTTGCCCCTGAAATTTCCC  300

seq1  CACCGCTTCAGTTCCTGAGTTGGCAGGCTTCCTCT  335
      |||||||||||||||||||||||||||||||||||
seq2  CACCGCTTCAGTTCCTGAGTTGGCAGGCTTCCTCT  335