BAC Information

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BAC

Clone NameB6Ng01-296F10
Chromosome10 (Build37)
Map Location 104,064,839 - 104,211,514
singlet/doubletdoublet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573, BC067068
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296F10.bB6Ng01-296F10.g
ACCGA091974GA091975
length1,1511,124
definitionB6Ng01-296F10.b B6Ng01-296F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,210,370 - 104,211,514)(104,064,839 - 104,065,953)
sequence
gaattcagtcttctttgaagatctggtagaattctgtactaaagtgatct
ttgaccctgagctttttttcattggtaaacttttaatgactgctcctact
tccttaggggttataggactgtttagatagtttacctgatcctgattatc
tttggtatctgtctagaaaatcatccatttcatataggttttctagtttt
gttgagtatatgcttttgtagtaatatctgataattgtttgaatttcctt
ggtttctattcttctaccttgtttttcatttttgattttataaatttgac
tactgtctctttgccctataattagtttggctaagaaattatgtaccttg
ttgatattctctaaagtaggtgggacagtaagggttaaaaatgtcaagtg
ttcacagtcctgagtattaagtaactagtagtatttatttaatttaaaaa
tccaaagttttcttttaacatcccatatacattattcaaataaggaacaa
attaaactttaaacataactacaaccataaaatgacactttgaacccatc
cagagcaatatacaaggaagctcaaaaacagtgaaatacacattgtttta
catgaaaacattttgttaaagttaaggaaagacagagttcagagttcatt
tttcaaataacaaatacaaggacatctggcaaatcttgagtggcaggaac
ttttaaaacagaatccataaaatggctggaagttcaatgtttaaagttcg
ttttaaactggatttattttaaaataaaaattattattatttgtttgaaa
tgctactgaaatgaaacaaacccaatgattttagtcatataatcatcgta
tgctccagagacttcaaatgaattacttaaactggtgcagaaattaaaag
tttaagcctcaataatagtttatcatgtattctgccaagaatctatttct
gatatcaaatgtgctcatacattaagaattattatctggctgcttagtat
ttgtatatcatgaatctctaagtgctctggagagaagcaaaatagtgggg
atctagattctcttctttgctaacaataagtatggggcttatttcaatag
aaagcatgcataccacaatgcttcttttccggaaaggattttctggaggg
g

gaattctatgtttattctctttgtgatgaactttactgcaaagtgtttac
tcaaaggaaagggataatggggtaataccagagatgaggtgatttgagga
taagttttacttctgcacccatcaatccatctgtaggattaggcatgtca
catttcctaatcccaggctcgattttctcaccacattaaaattttcaaag
ctgatctgttgtaatctgggatatttctttgcataagtaattttaaaata
aacgcatagtgagttgaagttgagaaattatattagttcatagaatgtgg
gctctagaggaagagaatgttttgggttctaactcttctcagagtacatt
tatctgttctctccatacaccagctgtatcctcacatggctgaaagcaca
gcattagccaggaaaaattaagaaagcaaaataaaatgccagtgtctcag
tcaagcgtcctgagcctttctgacttgctctggtcacatggttcttttga
agcaatggccttactaaggtcatgtgatggttgaatggctgacatcatct
aaagccccacctctgtggtttatttccttgactaaactaggtttgttcta
gaagaataggcatccaaagaggaacgtagttctggctggatgaacagaag
atccctggtagatatgctggtgacccagaatttcgtcacagtaatgttca
tataaacaacatctgataattgtttaaaaacatctgtaagtgacttttct
acataaaatatcaactttactctttagaaatggactcaatgtttaaactg
tatctcaaataagaggattatatattagttttcatagtttttgtcacatt
tacagagcatagagaaaatggcccttttaaaactagtccaagttaaattt
tgggatttgttgagttcttcttgtcagtaaaataattttgtagaatgggc
atttaagaagataccttgaaataaaagagcactgatgtacaaatgtgatg
atgggagaaatttttcttctaaaaggacaacaccaggtttgaaggtagga
agtaatttaaagactacttctactgtctccctcatcatctgctagaaaaa
ccatttgatattgagaaattaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104210370_104211514
seq2: B6Ng01-296F10.b_48_1198 (reverse)

seq1  CCCCTTCAGAAAAT-CTTTCTG--AAAG-AGCATTTGTGTATGCATGGCT  46
      ||||| |||||||| ||||| |  |||| ||||||   |||||||||  |
seq2  CCCCTCCAGAAAATCCTTTCCGGAAAAGAAGCATTGTGGTATGCATGCTT  50

seq1  TCTATTG-AATAAGCCCATAATTTATTG-TAGCAAAGAAGAG-ATCTAGA  93
      ||||||| |||||||||   | |||||| ||||||||||||| |||||||
seq2  TCTATTGAAATAAGCCCCATACTTATTGTTAGCAAAGAAGAGAATCTAGA  100

seq1  TTCCCACTATGTTGCTTCTCTCCAGAGCACTTAGAGATTCATGATATACA  143
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACTATTTTGCTTCTCTCCAGAGCACTTAGAGATTCATGATATACA  150

seq1  AATACTAAGCAGCCAGATAATAATTCTTAATGTATGAGCACATTTGATTA  193
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AATACTAAGCAGCCAGATAATAATTCTTAATGTATGAGCACATTTGA-TA  199

seq1  TCAGAAATAGATTCTTGGCAGAATACATGATAAACTATTATTGAGGCTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATAGATTCTTGGCAGAATACATGATAAACTATTATTGAGGCTTA  249

seq1  AACTTTTAATTTCTGCACCAGTTTAAGTAATTCATTTGAAGTCTCTGGAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAATTTCTGCACCAGTTTAAGTAATTCATTTGAAGTCTCTGGAG  299

seq1  CATACGATGATTATATGACTAAAATCATTGGGTTTGTTTCATTTCAGTAG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGATGATTATATGACTAAAATCATTGGGTTTGTTTCATTTCAGTAG  349

seq1  CATTTCAAACAAATAATAATAATTTTTATTTTAAAATAAATCCAGTTTAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAACAAATAATAATAATTTTTATTTTAAAATAAATCCAGTTTAA  399

seq1  AACGAACTTTAAACATTGAACTTCCAGCCATTTTATGGATTCTGTTTTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAACTTTAAACATTGAACTTCCAGCCATTTTATGGATTCTGTTTTAA  449

seq1  AAGTTCCTGCCACTCAAGATTTGCCAGATGTCCTTGTATTTGTTATTTGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCTGCCACTCAAGATTTGCCAGATGTCCTTGTATTTGTTATTTGA  499

seq1  AAAATGAACTCTGAACTCTGTCTTTCCTTAACTTTAACAAAATGTTTTCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAACTCTGAACTCTGTCTTTCCTTAACTTTAACAAAATGTTTTCA  549

seq1  TGTAAAACAATGTGTATTTCACTGTTTTTGAGCTTCCTTGTATATTGCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAATGTGTATTTCACTGTTTTTGAGCTTCCTTGTATATTGCTC  599

seq1  TGGATGGGTTCAAAGTGTCATTTTATGGTTGTAGTTATGTTTAAAGTTTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGTTCAAAGTGTCATTTTATGGTTGTAGTTATGTTTAAAGTTTA  649

seq1  ATTTGTTCCTTATTTGAATAATGTATATGGGATGTTAAAAGAAAACTTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCTTATTTGAATAATGTATATGGGATGTTAAAAGAAAACTTTG  699

seq1  GATTTTTAAATTAAATAAATACTACTAGTTACTTAATACTCAGGACTGTG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTAAATTAAATAAATACTACTAGTTACTTAATACTCAGGACTGTG  749

seq1  AACACTTGACATTTTTAACCCTTACTGTCCCACCTACTTTAGAGAATATC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTGACATTTTTAACCCTTACTGTCCCACCTACTTTAGAGAATATC  799

seq1  AACAAGGTACATAATTTCTTAGCCAAACTAATTATAGGGCAAAGAGACAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTACATAATTTCTTAGCCAAACTAATTATAGGGCAAAGAGACAG  849

seq1  TAGTCAAATTTATAAAATCAAAAATGAAAAACAAGGTAGAAGAATAGAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAAATTTATAAAATCAAAAATGAAAAACAAGGTAGAAGAATAGAAA  899

seq1  CCAAGGAAATTCAAACAATTATCAGATATTACTACAAAAGCATATACTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAAATTCAAACAATTATCAGATATTACTACAAAAGCATATACTCA  949

seq1  ACAAAACTAGAAAACCTATATGAAATGGATGATTTTCTAGACAGATACCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTAGAAAACCTATATGAAATGGATGATTTTCTAGACAGATACCA  999

seq1  AAGATAATCAGGATCAGGTAAACTATCTAAACAGTCCTATAACCCCTAAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAATCAGGATCAGGTAAACTATCTAAACAGTCCTATAACCCCTAAG  1049

seq1  GAAGTAGGAGCAGTCATTAAAAGTTTACCAATGAAAAAAAGCTCAGGGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGGAGCAGTCATTAAAAGTTTACCAATGAAAAAAAGCTCAGGGTC  1099

seq1  AAAGATCACTTTAGTACAGAATTCTACCAGATCTTCAAAGAAGACTGAAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATCACTTTAGTACAGAATTCTACCAGATCTTCAAAGAAGACTGAAT  1149

seq1  TC  1145
      ||
seq2  TC  1151


seq1: chr10_104064839_104065953
seq2: B6Ng01-296F10.g_68_1191

seq1  GAATTCTATGTTTATTCTCTTTGTGATGAACTTTACTGCAAAGTGTTTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTTTATTCTCTTTGTGATGAACTTTACTGCAAAGTGTTTAC  50

seq1  TCAAAGGAAAGGGATAATGGGGTAATACCAGAGATGAGGTGATTTGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAAGGGATAATGGGGTAATACCAGAGATGAGGTGATTTGAGGA  100

seq1  TAAGTTTTACTTCTGCACCCATCAATCCATCTGTAGGATTAGGCATGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTACTTCTGCACCCATCAATCCATCTGTAGGATTAGGCATGTCA  150

seq1  CATTTCCTAATCCCAGGCTCGATTTTCTCACCACATTAAAATTTTCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCTAATCCCAGGCTCGATTTTCTCACCACATTAAAATTTTCAAAG  200

seq1  CTGATCTGTTGTAATCTGGGATATTTCTTTGCATAAGTAATTTTAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTGTTGTAATCTGGGATATTTCTTTGCATAAGTAATTTTAAAATA  250

seq1  AACGCATAGTGAGTTGAAGTTGAGAAATTATATTAGTTCATAGAATGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCATAGTGAGTTGAAGTTGAGAAATTATATTAGTTCATAGAATGTGG  300

seq1  GCTCTAGAGGAAGAGAATGTTTTGGGTTCTAACTCTTCTCAGAGTACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGAGGAAGAGAATGTTTTGGGTTCTAACTCTTCTCAGAGTACATT  350

seq1  TATCTGTTCTCTCCATACACCAGCTGTATCCTCACATGGCTGAAAGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTCTCTCCATACACCAGCTGTATCCTCACATGGCTGAAAGCACA  400

seq1  GCATTAGCCAGGAAAAATTAAGAAAGCAAAATAAAATGCCAGTGTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAGCCAGGAAAAATTAAGAAAGCAAAATAAAATGCCAGTGTCTCAG  450

seq1  TCAAGCGTCCTGAGCCTTTCTGACTTGCTCTGGTCACATGGTTCTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCGTCCTGAGCCTTTCTGACTTGCTCTGGTCACATGGTTCTTTTGA  500

seq1  AGCAATGGCCTTACTAAGGTCATGTGATGGTTGAATGGCTGACATCATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGCCTTACTAAGGTCATGTGATGGTTGAATGGCTGACATCATCT  550

seq1  AAAGCCCCACCTCTGTGGTTTATTTCCTTGACTAAACTAGGTTTGTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCACCTCTGTGGTTTATTTCCTTGACTAAACTAGGTTTGTTCTA  600

seq1  GAAGAATAGGCATCCAAAGAGGAACGTAGTTCTGGCTGGATGAACAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATAGGCATCCAAAGAGGAACGTAGTTCTGGCTGGATGAACAGAAG  650

seq1  ATCCCTGGTAGATATGCTGGTGACCCAGAATTTCGTCACAGTAATGTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGGTAGATATGCTGGTGACCCAGAATTTCGTCACAGTAATGTTCA  700

seq1  TATAAACAACATCTGATAATTGTTTAAAAACATCTGTAAGTGACTTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACAACATCTGATAATTGTTTAAAAACATCTGTAAGTGACTTTTCT  750

seq1  ACATAAAATATCAACTTTACTCTTTAGAAATGGACTCAATGTTTAAACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATATCAACTTTACTCTTTAGAAATGGACTCAATGTTTAAACTG  800

seq1  TATCTCAAATAAGAGGATTATATATTAGTTTTCATAGTTTTTGTCACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAATAAGAGGATTATATATTAGTTTTCATAGTTTTTGTCACATT  850

seq1  TACAGAGCATAGAGAAAATGGCCCTTTTAAAACTAGTCCAAGTTAAATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGCATAGAGAAAATGGCCCTTTTAAAACTAGTCCAAGTTAAATTT  900

seq1  T-GGATTTGTTGAGTTCTTCTTGTCAGTAAAATAATTTTGTAGAATGGGC  949
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGTTGAGTTCTTCTTGTCAGTAAAATAATTTTGTAGAATGGGC  950

seq1  A-TTAAG-AGATACCTTGAAAT-AAAGAGCACTGATGTACAAATGTGATG  996
      | ||||| |||||||||||||| |||||||||||||||||||||||||||
seq2  ATTTAAGAAGATACCTTGAAATAAAAGAGCACTGATGTACAAATGTGATG  1000

seq1  AT-GGAGAAA-TTTTCCTCTAAAA-GACAACA-CAGGTTTGAA-GTAGGG  1041
      || ||||||| ||||| ||||||| ||||||| |||||||||| ||||| 
seq2  ATGGGAGAAATTTTTCTTCTAAAAGGACAACACCAGGTTTGAAGGTAGGA  1050

seq1  AGTAA-TTAAAGACCTACTTCTTACTGTTCCTCCTCATCATTCTGCTAGA  1090
      ||||| ||||||| ||||||| ||||| ||  |||||||| |||||||||
seq2  AGTAATTTAAAGA-CTACTTC-TACTG-TCTCCCTCATCA-TCTGCTAGA  1096

seq1  AAAA-CAATTGATATTGAG--ATTAAAG  1115
      |||| || |||||||||||  |||||||
seq2  AAAACCATTTGATATTGAGAAATTAAAG  1124


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