BAC Information

Click to search

BAC

Clone NameB6Ng01-296L07
Chromosome6 (Build37)10 (Build37)
Map Location 61,461,526 - 61,462,531128,993,640 - 128,994,406
singlet/doubletsingletsinglet
Overlap geneC130092O11Rik, LOC100042694
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296L07.bB6Ng01-296L07.g
ACCGA092245GA092246
length1,030769
definitionB6Ng01-296L07.b B6Ng01-296L07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,461,526 - 61,462,531)(128,993,640 - 128,994,406)
sequence
gaattcttcatctgcttcagaactactaagagctggcttcctgagctcat
ctagtgacgagtatctcctagagacctccgctaatcgatcttttttcttt
tcttttttcttttccttccttctaatctctccccaggtattcttacctga
cctaaacttttcctcgggttcaagacccttggaaaggcctgtatacttat
tttgtgtaccatattttctctttgctcctactctctctccccgctttact
tctgatagattgccctgaatttcatccagaattttcagccctatcttaat
cacctgataacatgtgaaaaggaacaaaagggctcctaacattagaaaaa
attcaaggccaaacattttccactttacttctgatagactgtcttgaatt
tccttagaaagttcaaggccaggcgtacctcgtaaagctgtactcactgg
tactctcgttccccagctgaaaagttctgaattcatgcagttgaatcctt
cttaacagtctgctttacgggaacctttattaccgcgacccgcagttctg
gttctggaatgagggatcttccttgcgccggtgaagctcccgtcccgagt
ttcctcccgggttttttcttcccggattttttctcgtcccggaatttctc
gtcccggatttcagcaccaattcttaatcgcgttctcacgcccggccagg
aaagacgcaacagaccagaatcttctgcggcaaaactttattgcttacat
ctttgggagccaggagggcaagcgcccagcgcccagccccaaaaacgaaa
gccccttcaataatgaaaccgaaaccccttccctctttaggagagttata
tttcgcctaggacgcatcactccctgattggctgcagcccatggccgagc
tgacgttcacgggaaaggtagagtacaagtagtcataaatacccttggct
catgcgcagattatttgtttaccacttagaacacaggatgtcagcgcatc
tgtgacggcgatgtgggggcgctccacaga

gaattctgatggggaatttcattgaatctgtaaatttctttcagttgaat
agtaatttagtaaaacttgtataataaaaatttttaaacactgaagaaat
ttaagatatcagaagttagaaaggtttctcacatttaaagaataatagaa
tcaatattggaaaaattatgagcaagtaagatggttcagagggtaaatac
acttgaatccatgagtgataatttgaggttgccctcttggcccatctggt
agtaaaaaagaataatttcccacaagtgaccctcagccctccccccaaca
cactcacaacgttgcacacatactcccacactcataaatattcaggattt
ctacccacacacaataaatgaataaaagttgaaaaaaatgttacacttta
gaaataaaattgagtggagtaggtttatttgaaaaatatttataaaagct
aaaagttttgataaatatgctaatatatatggaaataaagaaagcaaaag
gaaaattacaggcttgattgagactcaaaataaaatactagaatgcaagc
ttagaaagagggagtagaggatatcttctgattcaaatgctaattttgat
gagcattcaggtatctctacagaagtgttaatttctgttgggttgcctcc
acagacagaatgtatgtgtgtgtatgtgtgtgtgtgtgtgtaattttttg
gtggttgtggactgccacttttattattaatggtcttaagatagcaaaaa
agtagaattccatttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61461526_61462531
seq2: B6Ng01-296L07.b_205_1073

seq1  CCTCAGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGAACCA  50
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTCGGGTTCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCA  50

seq1  TATTTTTTCTTTGCTCCTATTCTCTCTCCCCGCTTTACTTCTGATAGATT  100
      |||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TATTTTCTCTTTGCTCCTACTCTCTCTCCCCGCTTTACTTCTGATAGATT  100

seq1  GTCCTGAACTTCATCCAGAA---TCCGCCCTGCCTTAACCACTTGATAAC  147
      | |||||| |||||||||||   || |||||  ||||| ||| |||||||
seq2  GCCCTGAATTTCATCCAGAATTTTCAGCCCTATCTTAATCACCTGATAAC  150

seq1  ATGTGAAAAGGAACAAAAGGGCTTCTAACACTAGAGAAAGTTCAAGGCCA  197
      ||||||||||||||||||||||| |||||| |||| ||| ||||||||||
seq2  ATGTGAAAAGGAACAAAAGGGCTCCTAACATTAGAAAAAATTCAAGGCCA  200

seq1  AACATACCTTATAAAGCTATTTTCCACTTTACTTCTGATAGACTGTCTTG  247
      |||               ||||||||||||||||||||||||||||||||
seq2  AAC---------------ATTTTCCACTTTACTTCTGATAGACTGTCTTG  235

seq1  AATTTCCTTAGAAAGTTCAAGGCCAGGCTTACCTCGTAAAGCTATACTTA  297
      |||||||||||||||||||||||||||| |||||||||||||| |||| |
seq2  AATTTCCTTAGAAAGTTCAAGGCCAGGCGTACCTCGTAAAGCTGTACTCA  285

seq1  CGGGTTACCGCCGTTCCCCAGCTGAAAAGTTCTGAATTCATGCAGTTGAA  347
      | || |||   |||||||||||||||||||||||||||||||||||||||
seq2  CTGG-TACTCTCGTTCCCCAGCTGAAAAGTTCTGAATTCATGCAGTTGAA  334

seq1  TCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTAACAGTCTGCTTTACGGGAACCTTTATTACCGCGACCCGCAG  384

seq1  TTCTGGTTCTGGAATGAGGGATTTTCCCTGCGCCGGTGAAACTCCCGTCC  447
      |||||||||||||||||||||| |||| |||||||||||| |||||||||
seq2  TTCTGGTTCTGGAATGAGGGATCTTCCTTGCGCCGGTGAAGCTCCCGTCC  434

seq1  CGAGTTTCCTCCCGGGTTTTTTCTTCCCGGATTTTTTCTCGTCCCGGAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTTTCCTCCCGGGTTTTTTCTTCCCGGATTTTTTCTCGTCCCGGAAT  484

seq1  TTCTCGTCCCGGATTTCAGCACCAATTCTTAATAGCGTTCTCACGCCAGG  547
      ||||||||||||||||||||||||||||||||| ||||||||||||| ||
seq2  TTCTCGTCCCGGATTTCAGCACCAATTCTTAATCGCGTTCTCACGCCCGG  534

seq1  CCAGGAAAGACGCAACAAACCAAAATCTTCTGCGGCAAAACTTTATTGCT  597
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  CCAGGAAAGACGCAACAGACCAGAATCTTCTGCGGCAAAACTTTATTGCT  584

seq1  TACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTTGGGAGCCAGGAGGGCAAGCGCCCAGCGCCCAGCCCCAAAAA  634

seq1  CGAAAGCCCCTTCTATATTTTTAGGAGCCAGAGCTCTGGCGCGCCAAAGC  697
      ||||||||||||| ||| |                               
seq2  CGAAAGCCCCTTCAATAAT-------------------------------  653

seq1  GCAGAGCGTGCTCTATTGTTTACATCTTTAGGCAGCGAGCGAGCGCAGGG  747
                                                        
seq2  --------------------------------------------------  653

seq1  CGCGCAGAGCCAGAGAGATGCCAGCGAGAGAGCGATGGCGGAAACCCCGT  797
                                 || |       | |||||||| |
seq2  ---------------------------GAAA-------CCGAAACCCCTT  669

seq1  CCCCTTTTTTAGGAGCGTTATATTTCGCCTAGGACGCATCACTCCCTGAT  847
      |||  | |||||||| ||||||||||||||||||||||||||||||||||
seq2  CCC--TCTTTAGGAGAGTTATATTTCGCCTAGGACGCATCACTCCCTGAT  717

seq1  TGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAGCCCATGGCCGAGCTGACGTTCACGGGAAAGGTAGAGTACAA  767

seq1  GTAGTCATAAAATACCCTTGGCTCATGCGCAGATTATTTGTTTACCACTT  947
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCAT-AAATACCCTTGGCTCATGCGCAGATTATTTGTTTACCACTT  816

seq1  AGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAATGTGGGGGCGGCT  997
      ||||||||||||||||||| |||| |||||||||| |||||||||| |||
seq2  AGAACACAGGATGTCAGCG-CATC-TGTGACGGCG-ATGTGGGGGC-GCT  862

seq1  CCCAACAGA  1006
      ||  |||||
seq2  CC--ACAGA  869


seq1: chr10_128993640_128994406
seq2: B6Ng01-296L07.g_70_838 (reverse)

seq1  CCAC-AATGGAA-TCTACTTTGTATGCTAAC-TAAGAACATTAATAATAA  47
      |||| ||||||| |||||||| | ||||| | ||||| ||||||||||||
seq2  CCACAAATGGAATTCTACTTT-TTTGCTATCTTAAGACCATTAATAATAA  49

seq1  AAGTGGCAGTCCACAACCACCAAAAAATTACACACACACACACACATACA  97
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAGTCCACAACCACCAAAAAATTACACACACACACACACATACA  99

seq1  CACACATACATTCTGTCTGTGGAGGCAACCCAACAGAAATTAACACTTCT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATTCTGTCTGTGGAGGCAACCCAACAGAAATTAACACTTCT  149

seq1  GTAGAGATACCTGAATGCTCATCAAAATTAGCATTTGAATCAGAAGATAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGATACCTGAATGCTCATCAAAATTAGCATTTGAATCAGAAGATAT  199

seq1  CCTCTACTCCCTCTTTCTAAGCTTGCATTCTAGTATTTTATTTTGAGTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTCCCTCTTTCTAAGCTTGCATTCTAGTATTTTATTTTGAGTCT  249

seq1  CAATCAAGCCTGTAATTTTCCTTTTGCTTTCTTTATTTCCATATATATTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGCCTGTAATTTTCCTTTTGCTTTCTTTATTTCCATATATATTA  299

seq1  GCATATTTATCAAAACTTTTAGCTTTTATAAATATTTTTCAAATAAACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATTTATCAAAACTTTTAGCTTTTATAAATATTTTTCAAATAAACCT  349

seq1  ACTCCACTCAATTTTATTTCTAAAGTGTAACATTTTTTTCAACTTTTATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTCAATTTTATTTCTAAAGTGTAACATTTTTTTCAACTTTTATT  399

seq1  CATTTATTGTGTGTGGGTAGAAATCCTGAATATTTATGAGTGTGGGAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTGTGTGTGGGTAGAAATCCTGAATATTTATGAGTGTGGGAGTA  449

seq1  TGTGTGCAACGTTGTGAGTGTGTTGGGGGGAGGGCTGAGGGTCACTTGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCAACGTTGTGAGTGTGTTGGGGGGAGGGCTGAGGGTCACTTGTG  499

seq1  GGAAATTATTCTTTTTTACTACCAGATGGGCCAAGAGGGCAACCTCAAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTATTCTTTTTTACTACCAGATGGGCCAAGAGGGCAACCTCAAAT  549

seq1  TATCACTCATGGATTCAAGTGTATTTACCCTCTGAACCATCTTACTTGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCATGGATTCAAGTGTATTTACCCTCTGAACCATCTTACTTGCT  599

seq1  CATAATTTTTCCAATATTGATTCTATTATTCTTTAAATGTGAGAAACCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTTCCAATATTGATTCTATTATTCTTTAAATGTGAGAAACCTT  649

seq1  TCTAACTTCTGATATCTTAAATTTCTTCAGTGTTTAAAAATTTTTATTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTCTGATATCTTAAATTTCTTCAGTGTTTAAAAATTTTTATTAT  699

seq1  ACAAGTTTTACTAAATTACTATTCAACTGAAAGAAATTTACAGATTCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTTACTAAATTACTATTCAACTGAAAGAAATTTACAGATTCAAT  749

seq1  GAAATTCCCCATCAGAATTC  767
      ||||||||||||||||||||
seq2  GAAATTCCCCATCAGAATTC  769


| Home | SequenceCutter | Blast | Download |