BAC Information

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BAC

Clone NameB6Ng01-296L16
Chromosome10 (Build37)
Map Location 79,182,155 - 79,183,218
singlet/doubletsinglet
Overlap geneHcn2
Upstream geneCcdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg
Downstream genePolrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-296L16.bB6Ng01-296L16.g
ACCGA092263GA092264
length1,072788
definitionB6Ng01-296L16.b B6Ng01-296L16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcctagagtccccgaggactcagggtgcctggagatcacttt
aggcctttctgcctcaacttctcatgactcgaggaggttgtggtgtgggg
gacggggacaggtgtctgatgtgtctggaaggatcttctagtatttcaat
ctttattccatttacatattgtgtctggggacaccatggtacttacgtgc
tgttagtcagaaggcaggatgcagagccagctctctcctaactcgtgggt
cctaggatccaatcagttcatcaggtttggtggtaggcatttttattcaa
tgagctatctcattgctcccaggttttttttcctggggtggtcctgggtc
tcctgatgctcaggcttgtcttaaactcactctgatggaggatacccttg
aactcctgaccctcctgagtgctagggaggagataggaatggtccaccat
gctcagtttctgtgttgctggaattgtgacccaggctttgtgcatgttag
aagagtgtgctacccactgatgtcccaatttgagatctcattctgtagcc
caggctgacctcccacttacggcaatcctcctgcctcatcctcccacctg
ctaggatcacagatagtcaccacctcacccggttttacctgctgcttctg
agcgtcagccctggccctgagaaggttcatggagaagcaagtttgaaggt
tcttatggggaagtgttccaggcctggatgtccatgctcaagctgggaat
cagagcagcggatacctgaggaagggagaggggagagccaggcagcctca
gaagcccatagacccagcccagaactgtggatgctggttctgagcctgcc
acaccctcctccacacacccccagcacacacacttgatggccagggcatc
ctgtgaggtcagggtccctgcaatccctgcatcctgtgaggtcagggttc
ctgcatgtaaatccctggaaatgttgccctttatcaagggccctagataa
atctcattcctcagggaggaatatggggtttggggcatgcacctgccctc
ccacatgggatgttgtggacct
gaattcccaaaacctaagatggaggctccggtatgatcccgcgaaaccac
ttcttggcatgtgtccaaaggccgcagtatccagctgcacagagactgct
cagccctgtctgtctttactgctctatgcataagggctaagaaatggaaa
ctgatttcagacccctggacagggggctgagatgcccattttacacacca
aagcagacctgccctccaggttctcccaacatccctcagtgcctgcctgg
catgccctgccccaaccccggggctgcccttaccccagaggctcctctct
acagaatccagacattttggtctcttgctctcttctttttcttctttttc
tctccctccccctttccccatggcaactgcactgacctcagtgaggccag
ggaactcacctggggacagctccaataagcctgcctttaatataatctaa
tctggtgtaaattggctcacttcactggcagtggaaaaagaacccatcag
aaacaacccaaatgctcttcaaccaataaatagatactgaaaaatgttgt
ctatatatactgtgggatattattcatctgtcgggaaaaacaatcatgac
acttgtaggttcagtgactagaactccaaaagatggcattgagcacggga
gcgcagacccagaaagacaaacatccaatgtactctcttactggaggctc
aaatattccaatcttccgttgtatgtagactgtagtacagaagccgggaa
cgtgtaaaagggagggggaggggcttgtggtgggaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79182155_79183218
seq2: B6Ng01-296L16.b_48_1119

seq1  GAATTCCATCCTAGAGTCCCCGAGGACTCAGGGTGCCTGGAGATCACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCTAGAGTCCCCGAGGACTCAGGGTGCCTGGAGATCACTTT  50

seq1  AGGCCTTTCTGCCTCAACTTCTCATGACTCGAGGAGGTTGTGGTGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTTCTGCCTCAACTTCTCATGACTCGAGGAGGTTGTGGTGTGGGG  100

seq1  GACGGGGACAGGTGTCTGATGTGTCTGGAAGGATCTTCTAGTATTTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGGGACAGGTGTCTGATGTGTCTGGAAGGATCTTCTAGTATTTCAAT  150

seq1  CTTTATTCCATTTACATATTGTGTCTGGGGACACCATGGTACTTACGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCCATTTACATATTGTGTCTGGGGACACCATGGTACTTACGTGC  200

seq1  TGTTAGTCAGAAGGCAGGATGCAGAGCCAGCTCTCTCCTAACTCGTGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCAGAAGGCAGGATGCAGAGCCAGCTCTCTCCTAACTCGTGGGT  250

seq1  CCTAGGATCCAATCAGTTCATCAGGTTTGGTGGTAGGCATTTTTATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGATCCAATCAGTTCATCAGGTTTGGTGGTAGGCATTTTTATTCAA  300

seq1  TGAGCTATCTCATTGCTCCCAGGTTTTTTTTCCTGGGGTGGTCCTGGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATCTCATTGCTCCCAGGTTTTTTTTCCTGGGGTGGTCCTGGGTC  350

seq1  TCCTGATGCTCAGGCTTGTCTTAAACTCACTCTGATGGAGGATACCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGCTCAGGCTTGTCTTAAACTCACTCTGATGGAGGATACCCTTG  400

seq1  AACTCCTGACCCTCCTGAGTGCTAGGGAGGAGATAGGAATGGTCCACCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTGACCCTCCTGAGTGCTAGGGAGGAGATAGGAATGGTCCACCAT  450

seq1  GCTCAGTTTCTGTGTTGCTGGAATTGTGACCCAGGCTTTGTGCATGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTTTCTGTGTTGCTGGAATTGTGACCCAGGCTTTGTGCATGTTAG  500

seq1  AAGAGTGTGCTACCCACTGATGTCCCAATTTGAGATCTCATTCTGTAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTGCTACCCACTGATGTCCCAATTTGAGATCTCATTCTGTAGCC  550

seq1  CAGGCTGACCTCCCACTTACGGCAATCCTCCTGCCTCATCCTCCCACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGACCTCCCACTTACGGCAATCCTCCTGCCTCATCCTCCCACCTG  600

seq1  CTAGGATCACAGATAGTCACCACCTCACCCGGTTTTACCTGCTGCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGATCACAGATAGTCACCACCTCACCCGGTTTTACCTGCTGCTTCTG  650

seq1  AGCGTCAGCCCTGGCCCTGAGAAGGTTCATGGAGAAGCAAGTTTGAAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAGCCCTGGCCCTGAGAAGGTTCATGGAGAAGCAAGTTTGAAGGT  700

seq1  TCTTATGGGGAAGTGTTCCAGGCCTGGATGTCCATGCTCAAGCTGGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGGGAAGTGTTCCAGGCCTGGATGTCCATGCTCAAGCTGGGAAT  750

seq1  CAGAGCAGCGGATACCTGAGGAAGGGAGAGGGGAGAGCCAGGCAGCCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGCGGATACCTGAGGAAGGGAGAGGGGAGAGCCAGGCAGCCTCA  800

seq1  GAAGCCCATAGACCCAGCCCAGAACTGTGGATGCTGGTTCTGAGCCTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCATAGACCCAGCCCAGAACTGTGGATGCTGGTTCTGAGCCTGCC  850

seq1  ACACCCTCCTCCACACACCCCCAGCACACACACTTGATGGCCAGGGCATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCCTCCACACACCCCCAGCACACACACTTGATGGCCAGGGCATC  900

seq1  CTGTGAGGTCAGGGT-CCTGC-ATCCCTGCATCCTGTGAGGTCAGGG-TC  947
      ||||||||||||||| ||||| ||||||||||||||||||||||||| ||
seq2  CTGTGAGGTCAGGGTCCCTGCAATCCCTGCATCCTGTGAGGTCAGGGTTC  950

seq1  CTGCATGTAAATCCCTGGAAATG-TGCCCTTTATCAA-GGCCCTAGAATA  995
      ||||||||||||||||||||||| ||||||||||||| |||||||| |||
seq2  CTGCATGTAAATCCCTGGAAATGTTGCCCTTTATCAAGGGCCCTAG-ATA  999

seq1  AATCTCATT-CTCAGGGAGG-ATATGGGGTTT-GGGCATGCACCTG-CCT  1041
      ||||||||| |||||||||| ||||||||||| ||||||||||||| |||
seq2  AATCTCATTCCTCAGGGAGGAATATGGGGTTTGGGGCATGCACCTGCCCT  1049

seq1  CCCACATGGGAGTGTTG-GGACCT  1064
      ||||||||||| ||||| ||||||
seq2  CCCACATGGGA-TGTTGTGGACCT  1072