BAC Information

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BAC

Clone NameB6Ng01-297B09
Chromosome10 (Build37)
Map Location 53,439,341 - 53,610,088
singlet/doubletdoublet
Overlap gene4930589M24Rik
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554
Downstream geneMan1a, LOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297B09.bB6Ng01-297B09.g
ACCGA092535GA092536
length1,1921,017
definitionB6Ng01-297B09.b B6Ng01-297B09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,439,341 - 53,440,530)(53,609,074 - 53,610,088)
sequence
gaattccagaagattaaatctccgagttcaaggtcatccgggattaaagg
tgtggtatacctttaatctgggttacatctttcatttgggattaaagatg
tggtggaacacacctttaatctgggctataccttctgctggagacaacat
aaggacattggaagaagggagtcttgctcttgctcctttgcctgcttgct
gtgtgacactgagtaactgctagatccttggacttccattcacagctact
actgaaccattgttgggaattgggctgcagactgtaagtcatcaataaat
ccctttactatgtagagactatccataagttctgtgactctagagaacct
tgactaatgcaccaggtaagggtctctcttctccagcccgaggaaccaat
gttacctgtggaggcctggaaaagagaaaaatccaatgccacttaggcca
agggcaggcaagtcatgactagaaatgaaataaaacttatttcaaggttt
ttggatgtaacttaaacaggtgttggtgaaaagggtctcagcctatttgt
gcaaaagttcacagcaaagttcattaattcacaaggtattggtgcctgtt
ttcctactgtgacaacacaactgcatagatgttattaactaccatgaaaa
aagaataaaaatatcaaatcaataaagtaaattacacatcagaaagaacc
ataagctaggttgtttcttctatcagacaacgataactcacacttctggt
cactcttaaagccttgttagtgggttctcccacaagcgtttggcccatgc
aaagactgctgacattcacaggtagatggaaaacaaacccatagattgcc
tctctccccttctccactactggagctcggtctgtgaagatctcagagat
ctaaacaaaacaaagttagctcttaattacaaagaatcccaagagaggaa
aggaaggacacttcttttctccacttgccaaataaaatgctgcgattggt
ggctcctggggtgctctttaattgtgacaggaagtgggactctacaggaa
aacaacagtgcagtcacttaacaggaaggccatgcctgactgcaccgctg
gactgaaaagcacaacagttagttggtaagggatgcagctgactgcaaag
aagaacaggcctggcctgctctctggttcctagaacaagaag

gaattccagcaatgaaggaaagtcattaataatgatgttgttacattttt
ttccaaacaagttcagctttcttttccccagctagcctttcttcagccac
tctaactggtgacacaaatgaattattacaatttccccctaagccacctt
atcttcttgtcaccaacctctggagcaggtgctaatataaatggctacag
aacaaagagggagaaaaaaaacaaaggattttggaggtattaatcagtcc
ctacagaaatccgaaagtgacttttgtcactattataaatcaatatacag
aatttctttaagtaccagataaaaaaacagtataggatgtcaaaatcatg
attaaaaggtagatagacataatgaattttaacaaggtcatcaatttctt
tggctgctttaagaaagtggtatagatcactttcttctctctggtctcct
tcacacagtgatgctcacattaagagatgtttcagactttgcacattgta
tatttaggcttttaacctctcccagagatcagataaaaaccacaaaacca
aaaagcattcttggcgcacgtactcagctcattctttaaagagggctcca
gcatgttcaggcaggagcagcagcgatgtcttcacaggttttatgtattg
attaactgtagaggacattctgtttgaaacgaaacttgaatacctgttaa
agtaaatggtttgttctactttgaagtaaagggcatgaagggaaagggaa
acacacccacccctccccctccccagaagttaccttttcatccatgatgt
gaaagcagggcatggggcaggaggtatgactacaggacttagcagtaaga
tgtatgggtttggtttttctttgttttttttctgagtttttttttttcct
tctgggataaaaaaatcaaaaccaagtgccaattcccactgccctaagca
aaagtcactagatggctccctagtgaccttttcttataaaatactcatgg
ccctataactaaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_53439341_53440530
seq2: B6Ng01-297B09.b_51_1242

seq1  GAATTCCAGAAGATTAAATCTCCGAGTTCAAGGTCATCCGGGATTAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAATCTCCGAGTTCAAGGTCATCCGGGATTAAAGG  50

seq1  TGTGGTATACCTTTAATCTGGGTTACATCTTTCATTTGGGATTAAAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTATACCTTTAATCTGGGTTACATCTTTCATTTGGGATTAAAGATG  100

seq1  TGGTGGAACACACCTTTAATCTGGGCTATACCTTCTGCTGGAGACAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAACACACCTTTAATCTGGGCTATACCTTCTGCTGGAGACAACAT  150

seq1  AAGGACATTGGAAGAAGGGAGTCTTGCTCTTGCTCCTTTGCCTGCTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACATTGGAAGAAGGGAGTCTTGCTCTTGCTCCTTTGCCTGCTTGCT  200

seq1  GTGTGACACTGAGTAACTGCTAGATCCTTGGACTTCCATTCACAGCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACACTGAGTAACTGCTAGATCCTTGGACTTCCATTCACAGCTACT  250

seq1  ACTGAACCATTGTTGGGAATTGGGCTGCAGACTGTAAGTCATCAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCATTGTTGGGAATTGGGCTGCAGACTGTAAGTCATCAATAAAT  300

seq1  CCCTTTACTATGTAGAGACTATCCATAAGTTCTGTGACTCTAGAGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTACTATGTAGAGACTATCCATAAGTTCTGTGACTCTAGAGAACCT  350

seq1  TGACTAATGCACCAGGTAAGGGTCTCTCTTCTCCAGCCCGAGGAACCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATGCACCAGGTAAGGGTCTCTCTTCTCCAGCCCGAGGAACCAAT  400

seq1  GTTACCTGTGGAGGCCTGGAAAAGAGAAAAATCCAATGCCACTTAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGTGGAGGCCTGGAAAAGAGAAAAATCCAATGCCACTTAGGCCA  450

seq1  AGGGCAGGCAAGTCATGACTAGAAATGAAATAAAACTTATTTCAAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGCAAGTCATGACTAGAAATGAAATAAAACTTATTTCAAGGTTT  500

seq1  TTGGATGTAACTTAAACAGGTGTTGGTGAAAAGGGTCTCAGCCTATTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTAACTTAAACAGGTGTTGGTGAAAAGGGTCTCAGCCTATTTGT  550

seq1  GCAAAAGTTCACAGCAAAGTTCATTAATTCACAAGGTATTGGTGCCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGTTCACAGCAAAGTTCATTAATTCACAAGGTATTGGTGCCTGTT  600

seq1  TTCCTACTGTGACAACACAACTGCATAGATGTTATTAACTACCATGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTGACAACACAACTGCATAGATGTTATTAACTACCATGAAAA  650

seq1  AAGAATAAAAATATCAAATCAATAAAGTAAATTACACATCAGAAAGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAAATATCAAATCAATAAAGTAAATTACACATCAGAAAGAACC  700

seq1  ATAAGCTAGGTTGTTTCTTCTATCAGACAACGATAACTCACACTTCTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTAGGTTGTTTCTTCTATCAGACAACGATAACTCACACTTCTGGT  750

seq1  CACTCTTAAAGCCTTGTTAGTGGGTTCTCCCACAAGCGTTTGGCCCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTAAAGCCTTGTTAGTGGGTTCTCCCACAAGCGTTTGGCCCATGC  800

seq1  AAAGACTGCTGACATTCACAGGTAGATGGAAAACAAACCCATAGATTGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGCTGACATTCACAGGTAGATGGAAAACAAACCCATAGATTGCC  850

seq1  TCTCTCCCCTTCTCCACTACTGGAGCTCGGTCTGTGAAGATCTCAGAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCCTTCTCCACTACTGGAGCTCGGTCTGTGAAGATCTCAGAGAT  900

seq1  CTAAACAAAACAAAGTTAGCTCTTAATTACAAAGAATCCCAAGAGAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAAAACAAAGTTAGCTCTTAATTACAAAGAATCCCAAGAGAGGAA  950

seq1  AGGAAGGACACTTCTTTTCTCCACTTGCCAAAATAAAATGCTGCGATTGG  1000
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  AGGAAGGACACTTCTTTTCTCCACTTGCC-AAATAAAATGCTGCGATT-G  998

seq1  GTGGCTCCT-GGGTGCTCTTTAATTGTGACAGGGAGTGGGACTCTACAAG  1049
      ||||||||| ||||||||||||||||||||||| |||||||||||||| |
seq2  GTGGCTCCTGGGGTGCTCTTTAATTGTGACAGGAAGTGGGACTCTACAGG  1048

seq1  -AAACAACAGTGCAGTCACTTAACAGG-AGGCCATG-CTGACTGCA-CGC  1095
       |||||||||||||||||||||||||| |||||||| ||||||||| |||
seq2  AAAACAACAGTGCAGTCACTTAACAGGAAGGCCATGCCTGACTGCACCGC  1098

seq1  TGGAACTGAAAAAGGCACAACAG-TAGTGGAAAGGGGATGCAGGCTGGAC  1144
      ||| ||||||||  ||||||||| |||| |  | |||||||| ||| |||
seq2  TGG-ACTGAAAA--GCACAACAGTTAGTTGGTAAGGGATGCA-GCT-GAC  1143

seq1  TGCAAAGAAG-ACAGAGTCT-GCCTGCTCTCTG--TCCTCAGACAAGAAG  1190
      |||||||||| |||| | || ||||||||||||  ||||   ||||||||
seq2  TGCAAAGAAGAACAG-GCCTGGCCTGCTCTCTGGTTCCTAGAACAAGAAG  1192


seq1: chr10_53609074_53610088
seq2: B6Ng01-297B09.g_67_1083 (reverse)

seq1  TCTCTTTAGTTATAGGGCCCATGAGTATTTTATAAG-AAAGGTCACTAGG  49
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  TCTCTTTAGTTATAGGG-CCATGAGTATTTTATAAGAAAAGGTCACTAGG  49

seq1  GAGCCATCTAGTGACTTTTGCTTAGGGCAGTGGGAATTGGCACTTGGTTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTAGTGACTTTTGCTTAGGGCAGTGGGAATTGGCACTTGGTTT  99

seq1  TGA-TTTTTTATCCCAGAAGGAAAAAAAAAAACTCAGAAAAAAAACAAAG  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTTATCCCAGAAGGAAAAAAAAAAACTCAGAAAAAAAACAAAG  149

seq1  AAAAACC-AACCCATACATCTTACTGCTAAGTCCTGTAGTCATACCTCCT  197
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAACCCATACATCTTACTGCTAAGTCCTGTAGTCATACCTCCT  199

seq1  GCCCCATGCCCTGCTTTCACATCATGGATGAAAAGGTAACTTCTGGGGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGCCCTGCTTTCACATCATGGATGAAAAGGTAACTTCTGGGGAG  249

seq1  GGGGAGGGGTGGGTGTGTTTCCCTTTCCCTTCATGCCCTTTACTTCAAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGGGTGGGTGTGTTTCCCTTTCCCTTCATGCCCTTTACTTCAAAG  299

seq1  TAGAACAAACCATTTACTTTAACAGGTATTCAAGTTTCGTTTCAAACAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAACCATTTACTTTAACAGGTATTCAAGTTTCGTTTCAAACAGA  349

seq1  ATGTCCTCTACAGTTAATCAATACATAAAACCTGTGAAGACATCGCTGCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTACAGTTAATCAATACATAAAACCTGTGAAGACATCGCTGCT  399

seq1  GCTCCTGCCTGAACATGCTGGAGCCCTCTTTAAAGAATGAGCTGAGTACG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCCTGAACATGCTGGAGCCCTCTTTAAAGAATGAGCTGAGTACG  449

seq1  TGCGCCAAGAATGCTTTTTGGTTTTGTGGTTTTTATCTGATCTCTGGGAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCAAGAATGCTTTTTGGTTTTGTGGTTTTTATCTGATCTCTGGGAG  499

seq1  AGGTTAAAAGCCTAAATATACAATGTGCAAAGTCTGAAACATCTCTTAAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAAGCCTAAATATACAATGTGCAAAGTCTGAAACATCTCTTAAT  549

seq1  GTGAGCATCACTGTGTGAAGGAGACCAGAGAGAAGAAAGTGATCTATACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCATCACTGTGTGAAGGAGACCAGAGAGAAGAAAGTGATCTATACC  599

seq1  ACTTTCTTAAAGCAGCCAAAGAAATTGATGACCTTGTTAAAATTCATTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTAAAGCAGCCAAAGAAATTGATGACCTTGTTAAAATTCATTAT  649

seq1  GTCTATCTACCTTTTAATCATGATTTTGACATCCTATACTGTTTTTTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTACCTTTTAATCATGATTTTGACATCCTATACTGTTTTTTTAT  699

seq1  CTGGTACTTAAAGAAATTCTGTATATTGATTTATAATAGTGACAAAAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTTAAAGAAATTCTGTATATTGATTTATAATAGTGACAAAAGTC  749

seq1  ACTTTCGGATTTCTGTAGGGACTGATTAATACCTCCAAAATCCTTTGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCGGATTTCTGTAGGGACTGATTAATACCTCCAAAATCCTTTGTTT  799

seq1  TTTTTCTCCCTCTTTGTTCTGTAGCCATTTATATTAGCACCTGCTCCAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCCCTCTTTGTTCTGTAGCCATTTATATTAGCACCTGCTCCAGA  849

seq1  GGTTGGTGACAAGAAGATAAGGTGGCTTAGGGGGAAATTGTAATAATTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTGACAAGAAGATAAGGTGGCTTAGGGGGAAATTGTAATAATTCA  899

seq1  TTTGTGTCACCAGTTAGAGTGGCTGAAGAAAGGCTAGCTGGGGAAAAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTCACCAGTTAGAGTGGCTGAAGAAAGGCTAGCTGGGGAAAAGAA  949

seq1  AGCTGAACTTGTTTGGAAAAAAATGTAACAACATCATTATTAATGACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACTTGTTTGGAAAAAAATGTAACAACATCATTATTAATGACTTT  999

seq1  CCTTCATTGCTGGAATTC  1015
      ||||||||||||||||||
seq2  CCTTCATTGCTGGAATTC  1017


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