BAC Information

Click to search

BAC

Clone NameB6Ng01-297E16
Chromosome10 (Build37)
Map Location 77,852,141 - 78,017,457
singlet/doubletdoublet
Overlap geneLOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482
Upstream geneAdarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1, Agpat3
Downstream geneIlvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik, EG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-297E16.bB6Ng01-297E16.g
ACCGA092684GA092685
length9611,215
definitionB6Ng01-297E16.b B6Ng01-297E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,852,141 - 77,853,093)(78,016,042 - 78,017,457)
sequence
gaattcctgatccctacaaggagcatcaatcctctgtgggaagctatggc
cctccatagaccacctgaaagccctcatatgcgaggcctgcctgacctac
catggtgcaacctcaatgttcatagaaaggctgacagggggcagggacag
ggacaggttcctctgcctccagagcctgaggagaacatcccgcctcatga
gctttcaatagctagtgaacaaggacaacccaagagaactctgagcttgt
gtggtgaacagttggctgagtgtctaccttggatcaggccagcctctggc
tctgcacagggttcatgtatttataagagatgactgagcttggaattggg
aaccccagttctgtatgggggtggggtcactggcctctttttttctgctc
cctgtaaccataggagagcaaactacctctcaagcagaggttactggctg
tgagctgtgtgaggaagggtcttccctgtcttttggtctccatggttaat
gtgcagtgtggcaccagtcacactgatggttgtacccctggatggggcag
aagatgctaccagagcctaggagactcagcaagccttgggccggtcctcc
ttgcctgagtggccctgacctgcctggccagcagtgtcaggaagaatggt
gtgtgccttgaatctcagtactcagaggtgaaggtaggtggatatccatg
acttcgaggtcagcctgtccctcacaaagagttccagatcacacagggct
ttgtagtgagaccctgttgcaagcaagtgagcaagcaagcaaaacaaaca
aagagtaagaaaagaaatgggagccaggtgtggtggcgcacgcctttaat
cacagcacttggggaagcagaggcaggtggattttctgagtttcagggcc
agcctgttctacaaaggtgaggttctaggacagcccagggctattccaga
gaaaatcctgt
gaattcagcttcaaagttagggaactatgtggataatgcaaatgtaagaa
gacacaaacttagattttataagcaaattaaatcaatcttagaaaaataa
tactacatacaaaagttaggcacataaggcaacatatgttccaacatgaa
actctgatggttgcaaaacaaaaatacaacactctgtgacatcaaatgac
atatcaggaataatgtgtgacagtccaaatgatgcagatccatctttatg
tcttatccttagtttaagatctgtgtgagccaagttttatgatggttttt
ttttccttctagaatatgttttacttccgatgtgatgaagtgtgttccta
cctgacctgagcaaaataatgtagcacttgagggcagattaggcttagaa
tgcttgtgctggaagccaagatagagaagacttccatagccatcatgatc
ttccccttggtgctgtggtagacagggaggaaggtgacccagacactgca
aaacacaagtatgctgaaagccagggtcttggattcattaaatgtgtcag
gcagattcctaaacataaaagccatagtgtagctccctaggcccaggact
cccaggtatcctaggacacaatgaaaggcactaggtaagcgcttattgaa
cataatgatgattgtctattttaagactgagcattcatgtcaatgaaggg
aatagtacctatttttcatccttttcttttaaaaatatttgtttgtggtt
gcatttgagtactctattggcatgtatgcctacatgacagaaaagagcat
cagacccattacagatggttgtgagccaccgtgtggttgctgggaattga
tctcaggacctctggaaaagcagccagtgctcttaaccactgagccaact
ctccagcccccttccttttctcttaacttcccctgcacatttctcttaac
ttttccctgcacataaccactttcctaaagttaacactctcgcactgtcc
tttcattgtcttcactccactgccacttctttacttactctatgccagtg
taatgatgactgctaaacaagataaaaaagatattcttagtcattgaagc
atatgaatatacaaaggtatataaaaatccacttttacagagagagaatc
gaaaggtgaggtagggaacaccaacactgtgtccaacacttgggagtatc
tggaaacctgcggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_77852141_77853093
seq2: B6Ng01-297E16.b_50_1010

seq1  GAATTCCTGATCCCTACAAGGAGCATCAATCCTCTGTGGGAAGCTATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCCTACAAGGAGCATCAATCCTCTGTGGGAAGCTATGGC  50

seq1  CCTCCATAGACCACCTGAAAGCCCTCATATGCGAGGCCTGCCTGACCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATAGACCACCTGAAAGCCCTCATATGCGAGGCCTGCCTGACCTAC  100

seq1  CATGGTGCAACCTCAATGTTCATAGAAAGGCTGACAGGGGGCAGGGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCAACCTCAATGTTCATAGAAAGGCTGACAGGGGGCAGGGACAG  150

seq1  GGACAGGTTCCTCTGCCTCCAGAGCCTGAGGAGAACATCCCGCCTCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTTCCTCTGCCTCCAGAGCCTGAGGAGAACATCCCGCCTCATGA  200

seq1  GCTTTCAATAGCTAGTGAACAAGGACAACCCAAGAGAACTCTGAGCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAATAGCTAGTGAACAAGGACAACCCAAGAGAACTCTGAGCTTGT  250

seq1  GTGGTGAACAGTTGGCTGAGTGTCTACCTTGGATCAGGCCAGCCTCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGAACAGTTGGCTGAGTGTCTACCTTGGATCAGGCCAGCCTCTGGC  300

seq1  TCTGCACAGGGTTCATGTATTTATAAGAGATGACTGAGCTTGGAATTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGGGTTCATGTATTTATAAGAGATGACTGAGCTTGGAATTGGG  350

seq1  AACCCCAGTTCTGTATGGGGGTGGGGTCACTGGCCTCTTTTTTTCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTTCTGTATGGGGGTGGGGTCACTGGCCTCTTTTTTTCTGCTC  400

seq1  CCTGTAACCATAGGAGAGCAAACTACCTCTCAAGCAGAGGTTACTGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACCATAGGAGAGCAAACTACCTCTCAAGCAGAGGTTACTGGCTG  450

seq1  TGAGCTGTGTGAGGAAGGGTCTTCCCTGTCTTTTGGTCTCCATGGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGTGTGAGGAAGGGTCTTCCCTGTCTTTTGGTCTCCATGGTTAAT  500

seq1  GTGCAGTGTGGCACCAGTCACACTGATGGTTGTACCCCTGGATGGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTGTGGCACCAGTCACACTGATGGTTGTACCCCTGGATGGGGCAG  550

seq1  AAGATGCTACCAGAGCCTAGGAGACTCAGCAAGCCTTGGGCCGGTCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTACCAGAGCCTAGGAGACTCAGCAAGCCTTGGGCCGGTCCTCC  600

seq1  TTGCCTGAGTGGCCCTGACCTGCCTGGCCAGCAGTGTCAGGAAGAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTGAGTGGCCCTGACCTGCCTGGCCAGCAGTGTCAGGAAGAATGGT  650

seq1  GTGTGCCTTGAATCTCAGTACTCAGAGGTGAAGGTAGGTGGATATCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTGAATCTCAGTACTCAGAGGTGAAGGTAGGTGGATATCCATG  700

seq1  ACTTCGAGGTCAGCCTGTCCCTCACAAAGAGTTCCAGATCACACAGGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGAGGTCAGCCTGTCCCTCACAAAGAGTTCCAGATCACACAGGGCT  750

seq1  TTGTAGTGAGACCCTGTTGCAAGCAAGTGAGCAAGCAAGCAAAACAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGTGAGACCCTGTTGCAAGCAAGTGAGCAAGCAAGCAAAACAAACA  800

seq1  AAGAGTAAGAAAAGAAATGGGAGCCAGGTGTGGTGGCGCACGCCTTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAAGAAAAGAAATGGGAGCCAGGTGTGGTGGCGCACGCCTTTAAT  850

seq1  CACAGCACTT-GGGAAGCAGAGGCAGGTGGA-TTTCTGAG-TTCAAGGCC  897
      |||||||||| |||||||||||||||||||| |||||||| |||| ||||
seq2  CACAGCACTTGGGGAAGCAGAGGCAGGTGGATTTTCTGAGTTTCAGGGCC  900

seq1  AGCCTGGTCTACAAA-GTGA-GTTCCAGGACAG-CCAGGGCTA-TACAGA  943
      |||||| |||||||| |||| |||| ||||||| ||||||||| | ||||
seq2  AGCCTGTTCTACAAAGGTGAGGTTCTAGGACAGCCCAGGGCTATTCCAGA  950

seq1  G-AAACCCTGT  953
      | ||| |||||
seq2  GAAAATCCTGT  961

seq1: chr10_78016042_78017457
seq2: B6Ng01-297E16.g_70_1284 (reverse)

seq1  TCCCGCAGGTCCCAGCTATTCCTGGTGTTGGTACAAATGTTGTGTCCTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCTCTGATCCTCTGATCCTGGGCATGTTGGAGTGCCTGGGAGTGGAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTGCCTCTGGGTGTTCTGGGGCTGGTTGCATAGTTTGCACCCAAGTTCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCAGGGCCCAGCCCAGAAAGACCAGAAGGAACCTGTGCCACTGGTCTGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTGAGTTCCTGTGTGCCTGGGTCCCGCAGG-TCCCAGATACTCCC-AGTG  248
                           ||||||||| | |||||||||||| ||||
seq2  ---------------------TCCCGCAGGTTTCCAGATACTCCCAAGTG  29

seq1  TTGGGAACAGATGTT-GTGT--CCT-CCTCACCTCT-GATCCTCTCT---  290
      ||||  |||| |||| ||||  ||| |||||||| | ||| ||||||   
seq2  TTGGACACAG-TGTTGGTGTTCCCTACCTCACCTTTCGATTCTCTCTCTG  78

seq1  GAAAAGTG---ATTTATATAAC-TTGTATA-TCATATGCCTTCAATGACT  335
       |||||||    |||||||| | ||||||| ||||||| |||||||||||
seq2  TAAAAGTGGATTTTTATATACCTTTGTATATTCATATG-CTTCAATGACT  127

seq1  AAG-ATATC-TTTTTATC-TGTGTAGCAGTCATCA-TACACTGGCATAGA  381
      ||| ||||| |||||||| ||| |||||||||||| ||||||||||||||
seq2  AAGAATATCTTTTTTATCTTGTTTAGCAGTCATCATTACACTGGCATAGA  177

seq1  GTAAGTAAAAGAAGTGGCAGGTGAGTG-AGAC-ATGAAAGGACAGTGCGA  429
      |||||| |||||||||||||  ||||| |||| |||||||||||||||||
seq2  GTAAGT-AAAGAAGTGGCAGTGGAGTGAAGACAATGAAAGGACAGTGCGA  226

seq1  GAGTG-TAACTTTAGG-AAGT-GTTATGTGCAGGGAAAAGTTAAGAGAAA  476
      ||||| |||||||||| |||| ||||||||||||||||||||||||| ||
seq2  GAGTGTTAACTTTAGGAAAGTGGTTATGTGCAGGGAAAAGTTAAGAG-AA  275

seq1  ATGTGCAGGGGAAGTTAAGAGAAAAGGAAGGGGGCTGGAGAGTTGGCTCA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGGGAAGTTAAGAGAAAAGGAAGGGGGCTGGAGAGTTGGCTCA  325

seq1  GTGGTTAAGAGCACTGGCTGCTTTTCCAGAGGTCCTGAGATCAATTCCCA  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGAGCACTGGCTGCTTTTCCAGAGGTCCTGAGATCAATTCCCA  375

seq1  GCAACCACACGGTGGCTCACAACCATCTGTAATGGGTCTGATGCTCTTTT  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCACACGGTGGCTCACAACCATCTGTAATGGGTCTGATGCTCTTTT  425

seq1  CTGTCATGTAGGCATACATGCCAATAGAGTACTCAAATGCAACCACAAAC  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGTAGGCATACATGCCAATAGAGTACTCAAATGCAACCACAAAC  475

seq1  AAATATTTTTAAAAGAAAAGGATGAAAAATAGGTACTATTCCCTTCATTG  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTAAAAGAAAAGGATGAAAAATAGGTACTATTCCCTTCATTG  525

seq1  ACATGAATGCTCAGTCTTAAAATAGACAATCATCATTATGTTCAATAAGC  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATGCTCAGTCTTAAAATAGACAATCATCATTATGTTCAATAAGC  575

seq1  GCTTACCTAGTGCCTTTCATTGTGTCCTAGGATACCTGGGAGTCCTGGGC  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTAGTGCCTTTCATTGTGTCCTAGGATACCTGGGAGTCCTGGGC  625

seq1  CTAGGGAGCTACACTATGGCTTTTATGTTTAGGAATCTGCCTGACACATT  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGAGCTACACTATGGCTTTTATGTTTAGGAATCTGCCTGACACATT  675

seq1  TAATGAATCCAAGACCCTGGCTTTCAGCATACTTGTGTTTTGCAGTGTCT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAATCCAAGACCCTGGCTTTCAGCATACTTGTGTTTTGCAGTGTCT  725

seq1  GGGTCACCTTCCTCCCTGTCTACCACAGCACCAAGGGGAAGATCATGATG  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCTTCCTCCCTGTCTACCACAGCACCAAGGGGAAGATCATGATG  775

seq1  GCTATGGAAGTCTTCTCTATCTTGGCTTCCAGCACAAGCATTCTAAGCCT  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAAGTCTTCTCTATCTTGGCTTCCAGCACAAGCATTCTAAGCCT  825

seq1  AATCTGCCCTCAAGTGCTACATTATTTTGCTCAGGTCAGGTAGGAACACA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCCTCAAGTGCTACATTATTTTGCTCAGGTCAGGTAGGAACACA  875

seq1  CTTCATCACATCGGAAGTAAAACATATTCTAGAAGGAAAAAAAAACCATC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCACATCGGAAGTAAAACATATTCTAGAAGGAAAAAAAAACCATC  925

seq1  ATAAAACTTGGCTCACACAGATCTTAAACTAAGGATAAGACATAAAGATG  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTTGGCTCACACAGATCTTAAACTAAGGATAAGACATAAAGATG  975

seq1  GATCTGCATCATTTGGACTGTCACACATTATTCCTGATATGTCATTTGAT  1226
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCATCATTTGGACTGTCACACATTATTCCTGATATGTCATTTGAT  1025

seq1  GTCACAGAGTGTTGTATTTTTGTTTTGCAACCATCAGAGTTTCATGTTGG  1276
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGAGTGTTGTATTTTTGTTTTGCAACCATCAGAGTTTCATGTTGG  1075

seq1  AACATATGTTGCCTTATGTGCCTAACTTTTGTATGTAGTATTATTTTTCT  1326
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTTGCCTTATGTGCCTAACTTTTGTATGTAGTATTATTTTTCT  1125

seq1  AAGATTGATTTAATTTGCTTATAAAATCTAAGTTTGTGTCTTCTTACATT  1376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGATTTAATTTGCTTATAAAATCTAAGTTTGTGTCTTCTTACATT  1175

seq1  TGCATTATCCACATAGTTCCCTAACTTTGAAGCTGAATTC  1416
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATCCACATAGTTCCCTAACTTTGAAGCTGAATTC  1215